Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq6460 150 2e-31 seq11570 134 1e-26 seq2558 134 1e-26 seq6583 127 2e-24 seq8348 116 3e-21 seq3960 107 2e-18 seq10792 104 2e-17 seq5126 102 7e-17 seq11792 100 2e-16 seq5827 93.3 4e-14 seq5293 91.5 1e-13 seq7115 86.0 5e-12 >seq6460 Length=10151297 Score = 150 bits (166), Expect = 2e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||| || ||||| || || | || || ||||| |||| ||||| || || | Sbjct 3934295 AAACATGCAGATCTTTGTGAAGACCCTCACGGGCAAAACCATCACCCTTGAGGTCGAGCC 3934236 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 || || ||| | || || |||| | ||||||||| ||||||||||||| ||||| || Sbjct 3934235 CAGTGACACCATTGAGAATGACAAAGACAAAATTCAACACAAGGAGGGTATCCCACCTGA 3934176 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 || || | ||| |||||||||||||||||| | || ||| |||||| |||| || || Sbjct 3934175 CCAGCAGCATCTGATATTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGACTA 3934116 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGC 22432 |||||| || ||||| |||||| | || | || |||| Sbjct 3934115 CAACATCCAGAAAGAGTCCACCCTGCACCTGGTGTTGC 3934078 >seq11570 Length=13276302 Score = 134 bits (148), Expect = 1e-26 Identities = 158/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| | ||||| || || | || || || || |||| ||||| || || ||| Sbjct 889657 ATGCAGCTCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 889598 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 | ||| || || ||||| ||||||||||||||||||||||| ||||| || || Sbjct 889597 TACACCACTGAGAATTTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGACCAG 889538 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||| |||||||| ||||| ||| | |||||| |||||| |||| || |||||| Sbjct 889537 CAGCATCTGATATTTGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTCTCAGACTACAAC 889478 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGC 22432 || |||||| | |||||||| || | ||| ||| Sbjct 889477 ATCCAAAAACAGTCCACCATGCACCTGGTTCTGC 889444 >seq2558 Length=10987700 Score = 134 bits (148), Expect = 1e-26 Identities = 151/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||| || ||| || || | || || ||||| |||| ||||| || || | Sbjct 486253 AAACATGCAGATCTTTACAAAGACCCTCACGGGCAAAACCATCACCCTTGAGGTCGAGCC 486312 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 || || || | || | ||||| ||||||||||||||||||||||| ||||| || Sbjct 486313 CAGTGACACTATTGAGAACGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGA 486372 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 || || ||||| |||||||||||||||||| | || ||| || ||| |||| || || Sbjct 486373 CCAGCAGCGTCTGATATTTGCCGGCAAACAGCTGGAAGATGGCCACACTCTCTCAGACTA 486432 Query 22395 CAACATTCAAAAAGAATCCACC 22416 |||||| || ||||| |||||| Sbjct 486433 CAACATCCACAAAGAGTCCACC 486454 >seq6583 Length=2948085 Score = 127 bits (140), Expect = 2e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || || | || || || || |||||||||| || | ||| Sbjct 72840 AGATGCAGATCTTTGTGAAGACCCTTACGGGCAAGACCATCACTCTTGAGGTCAAGCCCA 72781 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| || ||| ||||| ||||||||||||||||||||||| ||||| || | Sbjct 72780 GTGACACCAATGAGGATGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGACC 72721 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || | ||| ||| |||||||||||||| | | |||| ||| || |||| || ||| Sbjct 72720 AGCAGCATCTGATACTTGCCGGCAAACAGCTGGGGGATGGCCGAACTCTCTCAGACTACG 72661 Query 22397 ACATTCAAAAAGAATCCACC 22416 |||| ||||| |||||| Sbjct 72660 ACATCTGGAAAGAGTCCACC 72641 >seq8348 Length=12953760 Score = 116 bits (128), Expect = 3e-21 Identities = 149/204 (73%), Gaps = 1/204 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || || | || || || || |||| ||||| | | ||| Sbjct 6562350 AGATGCAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCACCCTTGAGATCAAGCCCA 6562409 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGA-GGGTATTCCACCCGAT 22335 || ||| | | || ||||| ||||||||||||||||| |||||| ||||| || Sbjct 6562410 GTGACACCATTTAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGGTATCCCACCTGAC 6562469 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| ||| |||| || |||||| |||||||| || ||| |||| | ||| Sbjct 6562470 CAGCAGCGTCTGATACTTGCTGGGAAACAGCTAGAGGATGGCCACACTCTCTCAGGCTAC 6562529 Query 22396 AACATTCAAAAAGAATCCACCATA 22419 ||||| || ||| | |||||| || Sbjct 6562530 AACATCCAGAAAAAGTCCACCCTA 6562553 >seq3960 Length=6554637 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 5/209 (2%) Strand=Plus/Minus Query 22206 TACATTTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGA 22265 |||| || | ||| ||| || ||||| || || | || || || || |||| || || Sbjct 1989453 TACAAATGCAGAGACGCAGATCTTTGTGAAGACCCTCACAGGCAAGACCATCACCCTCGA 1989394 Query 22266 AGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTAT 22325 || || ||| || ||| || || |||| |||||||||||||||||||| || Sbjct 1989393 GGTCGAGCCCAGTGACACCACTGAGAATGTCAAGGCCAAAATTCAAGACAAGGAGGGCAT 1989334 Query 22326 TCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGT 22385 ||||| || || || | ||| |||||||| ||||||||| | ||| |||||| | Sbjct 1989333 TCCACTTGACCAGCAGCATCTGATATTTGCGGGCAAACAGCTGGAG-----CCGCACTCT 1989279 Query 22386 CTCCGATTACAACATTCAAAAAGAATCCA 22414 ||| || | |||||| || ||||| |||| Sbjct 1989278 CTCAGACTGCAACATCCAGAAAGAGTCCA 1989250 >seq10792 Length=8297812 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || || | | || || || |||| | ||| ||||| ||| Sbjct 3779324 AGATGCAGATCTTTGTGAACACCCTCATGGGCAAGACCATCACCCCTGAGGTGGAGGCCA 3779265 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 | || ||| || || ||||| |||| |||||||||||||| || | || || | Sbjct 3779264 CTGACACCACTGAGAATGTCAAAGCCGAAATCCAAGACAAGGAGGGCATCCTGCCTGACC 3779205 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || |||| |||||||| ||||||||| |||||| ||||| |||| || || | Sbjct 3779204 AGCAGTGTCTGATATTTGCGGGCAAACAGCCGGAGGATGGCCGCAGTCTCTCAGACTAGA 3779145 Query 22397 ACATTCAAAAAGAATCCACC 22416 |||| || |||| |||||| Sbjct 3779144 ACATCCAGGAAGAGTCCACC 3779125 >seq5126 Length=8658521 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||| || || || || || | || || || || |||| || || || || ||| Sbjct 3006076 GATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCAG 3006135 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| ||| | || || |||| ||| ||||| |||||||| || || || || || || Sbjct 3006136 CGACACCATTGAGAATGTCAAGGCAAAGATTCAGGACAAGGAAGGCATCCCTCCTGACCA 3006195 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || | | || ||||| || |||||| | || ||| |||||| | || |||||||| Sbjct 3006196 GCAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGACGCACCCTGTCTGATTACAA 3006255 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||| || ||||| ||||| | || || || |||| ||| | || ||| Sbjct 3006256 CATCCAGAAAGAGTCCACTCTGCACTTGGTCCTGCGCTTGAGGGGGGGT 3006304 >seq11792 Length=7415672 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || | ||| || || | || || | ||| |||| |||| || | ||| Sbjct 6703383 ATGCAGATCTCTGTAAAGACCCTCACAGGAAGAACCATCACCTTTGAGGTCCAGCCCAGT 6703324 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || |||| || || ||||| || || || ||||||||||| || | ||| || || Sbjct 6703323 GACACCGGTGAAAATGTCAAAGCCAAGATCCATGACAAGGAGGGCATCCTACCTGACCAG 6703264 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||| ||||||| ||||||||||| |||||| || ||| | || ||||| ||| Sbjct 6703263 CAGCATCTGATATTTGTGGGCAAACAGTTGGAGGATGGCCACACTCTTTCAGATTATAAC 6703204 Query 22399 ATTCAAAAAGAATCCACC 22416 || || ||||| |||||| Sbjct 6703203 ATCCAGAAAGAGTCCACC 6703186 >seq5827 Length=2837444 Score = 93.3 bits (102), Expect = 4e-14 Identities = 142/201 (71%), Gaps = 1/201 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||| || ||||| || || | || || | || || | ||||| || || ||| Sbjct 1404275 AGATGTGGATCTTTGTGAAGACCCTCACAGGCACGACCATCGCCCTTGAGGTCGAGCCCA 1404334 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 ||| || || || |||| ||||||||||||||| |||| || | ||| || | Sbjct 1404335 GTGATGCCACTGAGAATGCCAAAGTCAAAATTCAAGACAAGTAGGGCATCCTACCTGACC 1404394 Query 22337 AACAACGTCTTAT-ATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 | || |||| || ||||| ||||||||| | ||||| |||||| |||| || ||| Sbjct 1404395 AGCAGTGTCTGATCATTTGAGGGCAAACAGCTGCAGGATGGCCGCACTCTCTCAGACTAC 1404454 Query 22396 AACATTCAAAAAGAATCCACC 22416 ||||| || ||||| |||||| Sbjct 1404455 AACATCCAGAAAGAGTCCACC 1404475 >seq5293 Length=3194832 Score = 91.5 bits (100), Expect = 1e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 |||||||||||||||||||| || ||||| || || || | ||| ||| |||| |||||| Sbjct 1733466 AAAATTCAAGACAAGGAGGGCATCCCACCTGACCAGCAGCATCTGATACTTGCGGGCAAA 1733407 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | |||||| | | || || | || |||||||| || ||||| | ||| Sbjct 1733406 CAGCTGGAGGATGGCTGTACTCTCCCAGACTACAACATCCAGAAAGAGTTCAC 1733354 >seq7115 Length=1795964 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| |||||||| ||||| ||| || || || |||| ||||| || ||| || Sbjct 163860 AAAATGCAGATTTTTGTGAAAACCCTAAGGGGGAAGACTATCACCCTTGAGGTTGAACCC 163919 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||||| | || || | || || || || || ||||| || ||||| || ||| Sbjct 163920 TCAGATACGGCAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 163979 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || ||| | || || ||||| ||| | || | || ||| || || | || || | | Sbjct 163980 CAGCAAAGACTGATCTTTGCTGGCGAGCAACTGGAAGATGGACGTACTTTGTCTGACTGC 164039 Query 22396 AACATTCAAAAAGAATCCAC 22415 ||||||||||| || || || Sbjct 164040 AACATTCAAAAGGAGTCTAC 164059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419660865031060