Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq4805 114 1e-20 seq5126 113 4e-20 seq12126 109 5e-19 seq6459 109 5e-19 seq11570 100 2e-16 seq7115 100 2e-16 seq5149 100 2e-16 seq1 91.5 1e-13 seq7038 86.0 5e-12 seq2780 86.0 5e-12 >seq4805 Length=5228064 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | ||| | ||||| || |||||||| ||||| || Sbjct 4473640 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGA 4473581 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| ||||| || ||||| |||| || | || || || ||||| Sbjct 4473580 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 4473521 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| |||| | ||| | || || | || ||| || Sbjct 4473520 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAAC 4473461 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | || || || || || ||||| || ||||||||||| Sbjct 4473460 CTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 4473413 >seq5126 Length=8658521 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| || ||||||||||| || || || |||||| || ||||| ||| Sbjct 3006273 GTGGACTCTTTCTGGATGTTGTAATCAGACAGGGTGCGTCCATCTTCCAGCTGTTTCCCA 3006214 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| | | ||| ||||| ||||| |||||||| ||||| ||||||| || Sbjct 3006213 GCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGAATCTTTGCCTTG 3006154 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| ||| ||||| || | ||| | || ||||| ||||| || Sbjct 3006153 ACATTCTCAATGGTGTCGCTGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTC 3006094 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 3006093 TTCACGAAGATCTGCAT 3006077 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || || |||||| |||||| || || || || Sbjct 3005817 GTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGCTTTCCG 3005758 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | ||| ||||| |||||||||||||| || || |||||| || Sbjct 3005757 GCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTATCTTGGATCTTTGCCTTG 3005698 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||| ||| || || || | ||| | || ||||| |||||||| Sbjct 3005697 ACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGAGTC 3005638 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 3005637 TTCACGAAGATCTGCAT 3005621 >seq12126 Length=7615049 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | ||| | ||||| || |||||||| ||||| || Sbjct 7457975 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGA 7457916 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| ||||| || ||||| |||| | | || || || ||||| Sbjct 7457915 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTTTGCTGATCAGGAGG 7457856 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| |||| | ||| | || || | || ||| || Sbjct 7457855 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAAC 7457796 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | || || || || || ||||| || ||||||||||| Sbjct 7457795 CTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 7457748 >seq6459 Length=16685579 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | ||| | ||||| || |||||||| ||||| || Sbjct 968960 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGA 968901 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| ||||| || ||||| |||| | | || || || ||||| Sbjct 968900 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTTTGCTGATCAGGAGG 968841 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| |||| | ||| | || || | || ||| || Sbjct 968840 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAAC 968781 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | || || || || || ||||| || ||||||||||| Sbjct 968780 CTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 968733 >seq11570 Length=13276302 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | ||| | ||||| || |||||||| ||||| || Sbjct 11748921 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGA 11748980 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| ||||| || ||||| |||| || | || || || ||||| Sbjct 11748981 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 11749040 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| |||| | ||| | || || | || ||| | Sbjct 11749041 AATTCCTTCCTTCTCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAGC 11749100 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | || | || || || ||||| | ||||||||||| Sbjct 11749101 CTCAAGGGTGATGGTCTGCCCCGTAAGGGTTTTCATGAAAATCTGCAT 11749148 >seq7115 Length=1795964 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| |||| |||||||| | | ||| | ||||| || |||||||||||| | || Sbjct 164090 ACCACCACAAAGTCTCAACAAAAGATGAAGAGTAGACTCCTTTTGAATGTTGCAGTCAGA 164031 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| ||||| | ||||| |||| || | || || || ||||| Sbjct 164030 CAAAGTACGTCCATCTTCCAGTTGCTCGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 163971 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| |||| | ||| | || || | || ||| || Sbjct 163970 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGCCGTATCTGAGGGTTCAAC 163911 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | || || || | || ||||| |||||||||||||| Sbjct 163910 CTCAAGGGTGATAGTCTTCCCCCTTAGGGTTTTCACAAAAATCTGCAT 163863 >seq5149 Length=2416856 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| |||||||| || | ||| | ||||| || |||||||| ||||| || Sbjct 1496114 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGA 1496173 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || |||||| |||||| ||||| || ||||| |||| || | || || || ||||| Sbjct 1496174 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 1496233 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||| |||| | ||| | || | || ||| || Sbjct 1496234 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGTCATATCCGAGGGTTCAAC 1496293 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | | ||| | || || || || || ||||| || ||||||||||| Sbjct 1496294 CTGGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 1496341 >seq1 Length=19716903 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| ||||||| || | ||| | ||||| || |||||||| ||||| || Sbjct 12236677 ACCACCACGAGGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGA 12236736 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || ||||| |||||| ||||| || ||||| |||| | | || || || ||||| Sbjct 12236737 CAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTTTGCTGATCAGGAGG 12236796 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| | || ||||| |||| | ||| || || | || ||| || Sbjct 12236797 AATTCCTTCCTCATCCTGGATCTTGGCCTTTACATTTTCTGTCGTATCCGAGGGTTCAAC 12236856 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | || || || || || ||||| || ||||||||||| Sbjct 12236857 CTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 12236904 >seq7038 Length=1003649 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || | ||| || |||||| || || || || Sbjct 394448 GTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCT 394507 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||| | ||| ||||| || ||||||||||| || || || || || Sbjct 394508 GCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGATTTTGGCCTTC 394567 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | ||| | |||||| ||| || || |||| ||| | || ||||||||||| || Sbjct 394568 ACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 394627 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 394628 TTCACGAAGATCTGCAT 394644 >seq2780 Length=8382912 Score = 86.0 bits (94), Expect = 5e-12 Identities = 154/224 (69%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 114159 CCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATA 114218 |||| |||||||| || ||||| | ||||| |||||||||| ||||| || || | Sbjct 5628199 CCACAGAGTCTCAACACAAAATGAAGAGTAGA--CTTTTTGAATATTGTAGTCAGACAAA 5628256 Query 114219 GTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATG 114278 ||||| |||||| || || || ||| | |||| || | ||| || | |||||||| Sbjct 5628257 GTACGTCCATCTTCCAGCTGCTTGCCAACAAAGATCAGTCTCTGCTGACCAGGAGGAATT 5628316 Query 114279 CCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCC 114338 ||||| || | ||||| | || | ||| | ||||| | || ||| | || Sbjct 5628317 CCTTCCTTAACCTGGATCTTGGCCTATACATTTTCTATTGTGTCCGAGGGTTCAGCCTCG 5628376 Query 114339 ACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | ||| | || || || || || ||| | || ||||||||||| Sbjct 5628377 AGGGTGATGGTCTTCCCTGTAAGGGTTATCACGAAAATCTGCAT 5628420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420067200027888