Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3971 154 3e-32 seq7904 84.2 4e-11 seq2336 84.2 4e-11 >seq3971 Length=4903791 Score = 154 bits (170), Expect = 3e-32 Identities = 394/589 (67%), Gaps = 23/589 (4%) Strand=Plus/Minus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 |||||| |||| || |||||| ||||| ||||||||| | ||| |||||||||| Sbjct 745209 ATCGAGTACCATGATATCTGGCAGATGTATAAGAAGGCGGAAGCTTCCTTCTGGACCGCC 745150 Query 42345 GAGGAGATTGACCTGGCCAAGGACAC--GGCCGGCTGGGAGTCACTGT---CTGAGAACG 42399 |||||| | |||||| |||||||| ||| |||||| || ||| | ||| | | Sbjct 745149 GAGGAGGTGGACCTGTCCAAGGACGTTTGGCA--CTGGGAATCCCTGAAGCCCGAGGA-G 745093 Query 42400 AAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATG 42459 | | |||| || | | | |||| ||||| || || ||| |||||||| |||| Sbjct 745092 AGAGATTTTATATCTCATA--TTCTGGTTTTCTTTGCAGCAAGTGATGGCATAGTAAATG 745035 Query 42460 AGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACG 42519 | ||| ||| | || | |||| || ||| || || ||||| |||| | Sbjct 745034 AAAACTTGGTGGAGCGATTTAGCCAAGAAGTTCAGATGACAGAAGCCCGCTGTTTCTGTG 744975 Query 42520 GCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACG----CCAAACTGCTCAAC 42575 ||||||| || |||||||| ||| | || ||||| |||| || | || || Sbjct 744974 GCTTCCAAATTGCCATAGAAAACATACATTCTGAAATGTATAGTTTCCGTATTG----AC 744919 Query 42576 ACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCC 42635 || ||||| |||||| || | | || |||| ||||| || |||||||| Sbjct 744918 ACTTACATAAAAGATCCCAAAGAAAGGGAATTTCTCCTCAATGCCATTGAAACGATGCCT 744859 Query 42636 TGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTC 42695 || ||||||||||||| || ||||| | ||||||| | | || || || | Sbjct 744858 TGTGTCAAGAAGAAGGCAGATTGGGCCTTGCACTGGATTGGGGACAAAGAAGCTACCTAT 744799 Query 42696 GGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCC 42755 || || | | |||| |||| | || | || |||||||| |||| || || || Sbjct 744798 GGTGAACGTGTTGTAGTCTTTGCTGCAGCAGAAGGCATCTT-TTCT--GGTTATTTTGCA 744742 Query 42756 TCCATCTTCTGGCTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACT 42814 || || |||||||||||| | ||| | |||||| || ||||| || || || ||||| Sbjct 744741 TCGATATTCTGGCTCAAGAAACGAGGACT-GATGCCTGGCCTCACATTTTCCAATGAACT 744683 Query 42815 CATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTC 42863 || ||||| || ||||| | || | || ||||| ||||| ||||| Sbjct 744682 TATTAGCAGAGATGAGGGTTTACACTGTGATTTTGCTTGCCTGATGTTC 744634 >seq7904 Length=13651311 Score = 84.2 bits (92), Expect = 4e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Minus Query 42708 GTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGG 42767 ||||||||| | || || || ||||||||||| || || | || || || || |||||| Sbjct 3487719 GTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCATCGATATTCTGG 3487660 Query 42768 CTCAAG-CAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGA 42826 |||||| | ||| | |||||| || ||||| || || || ||||| |||||||| || Sbjct 3487659 CTCAAGAAACGAGGACT-GATGCCTGGCCTCACATTTTCCAATGAACTTATCAGCAGAGA 3487601 Query 42827 CGAGG 42831 |||| Sbjct 3487600 TGAGG 3487596 >seq2336 Length=9258750 Score = 84.2 bits (92), Expect = 4e-11 Identities = 95/125 (76%), Gaps = 2/125 (2%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| |||||| | || || || || || |||||||| || | || || | || |||| Sbjct 5792204 TGGTGGCCTTTGCTGCTGTAGAAGGAATTTTCTTCTCAGGATCTTTTGCTGCTATATTCT 5792263 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| ||| |||| | ||||| |||||||| || || || |||||||||||||| Sbjct 5792264 GGCTAAAGAAGAGAGGTCTT-ATGCCAGGACTCACTTTTTCCAATGAACTCATCAGCAGA 5792322 Query 42825 GACGA 42829 || || Sbjct 5792323 GATGA 5792327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944184281154240