Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq4805 138 3e-27 seq12126 132 1e-25 seq6459 132 1e-25 seq7038 123 6e-23 seq5149 123 6e-23 seq4138 114 3e-20 seq5126 109 1e-18 seq2558 105 2e-17 seq11015 104 6e-17 seq10903 96.9 8e-15 seq7115 93.3 1e-13 seq4237 86.0 1e-11 >seq4805 Length=5228064 Score = 138 bits (152), Expect = 3e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||||||| || || ||||| ||||| ||||| | Sbjct 4473639 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 4473580 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||||| ||||| | ||| || || || |||||||| | || ||| | || Sbjct 4473579 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 4473520 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || |||||||| | ||| | ||| || Sbjct 4473519 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACC 4473460 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 ||||| ||||| |||||||| || || || || ||||| ||||||||| || Sbjct 4473459 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTTG 4473409 >seq12126 Length=7615049 Score = 132 bits (146), Expect = 1e-25 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||||||| || || ||||| ||||| ||||| | Sbjct 7457974 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 7457915 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||||| ||||| | ||| || || || ||||||| | || ||| | || Sbjct 7457914 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTTTGCTGATCAGGAGGA 7457855 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || |||||||| | ||| | ||| || Sbjct 7457854 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACC 7457795 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 ||||| ||||| |||||||| || || || || ||||| ||||||||| || Sbjct 7457794 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTTG 7457744 >seq6459 Length=16685579 Score = 132 bits (146), Expect = 1e-25 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||||||| || || ||||| ||||| ||||| | Sbjct 968959 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 968900 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||||| ||||| | ||| || || || ||||||| | || ||| | || Sbjct 968899 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTTTGCTGATCAGGAGGA 968840 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || |||||||| | ||| | ||| || Sbjct 968839 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACC 968780 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 ||||| ||||| |||||||| || || || || ||||| ||||||||| || Sbjct 968779 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTTG 968729 >seq7038 Length=1003649 Score = 123 bits (136), Expect = 6e-23 Identities = 147/198 (74%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||| | || ||||| || ||||| | || || ||||| ||| Sbjct 394454 TCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 394513 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || || | ||| || || ||| || ||||| |||||||||||||| || ||||| Sbjct 394514 ATGAGCCTCTGCTGG---TCGGGGGGAATGCCTTCCTTATCCTGGATTTTGGCCTTCACA 394570 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| || | || || | || || || || ||||| ||||| |||||||| ||||| Sbjct 394571 TTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTC 394630 Query 288460 ACGAATATCTGCATTATG 288477 ||||| ||||||||| || Sbjct 394631 ACGAAGATCTGCATTCTG 394648 >seq5149 Length=2416856 Score = 123 bits (136), Expect = 6e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||||||| || || ||||| ||||| ||||| | Sbjct 1496115 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 1496174 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||||| ||||| | ||| || || || |||||||| | || ||| | || Sbjct 1496175 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 1496234 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || |||||| | ||| | ||| || Sbjct 1496235 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGTCATATCCGAGGGTTCAACC 1496294 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 | ||| ||||| |||||||| || || || || ||||| ||||||||| || Sbjct 1496295 TGGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTTG 1496345 >seq4138 Length=9750826 Score = 114 bits (126), Expect = 3e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | | ||||||| || || ||||| ||||| ||||| | Sbjct 3988029 CCACCACGAAGTCTCAACGCAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 3987970 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || | ||| ||||| | ||| || || | |||||| | || |||| | || Sbjct 3987969 AAAGTCCATCCATCTTCCAGTTGCTTGCCAACAAAGATCCCTCTTTGCTGAGCAGGAGGA 3987910 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || |||||||| | ||| | ||| || Sbjct 3987909 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGTTTCAACC 3987850 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 ||||| ||||| |||||||| | || || || ||||| ||||||||| || Sbjct 3987849 TCGAGGGTGATGGTCTTCCCCATAAGGGTTTTCACGAAAATCTGCATTTTG 3987799 Score = 95.1 bits (104), Expect = 3e-14 Identities = 138/192 (72%), Gaps = 10/192 (5%) Strand=Plus/Minus Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343 |||| ||||| || ||||| | || ||| | | ||||| | || || |||||||||| Sbjct 7362078 CTTTCTGGATTTTGTAGTCAGAAAGAGTGTGGACATCTTCCAGCTGCTTGCCTGCGAAGA 7362019 Query 288344 TCAGACGCTGTTGAGAATCTG---GGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGT 288400 | || | ||| || |||| |||| |||||||||||||||| || | |||||||| Sbjct 7362018 TGAGCCTCTGCTG---GTCTGGGAGGATGTCTTCTTTATCCTGGATCTT-GGTTTCACGT 7361963 Query 288401 TTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGA 288460 |||| || || || | || || || ||||| ||||| || || |||||||| | Sbjct 7361962 TTTCAATGCTGTCACT---GCCCACCTCCAGGGTGATGGTCTTGCCAGTGAGAGTCTTCA 7361906 Query 288461 CGAATATCTGCA 288472 | || ||||||| Sbjct 7361905 CAAAGATCTGCA 7361894 >seq5126 Length=8658521 Score = 109 bits (120), Expect = 1e-18 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||| | || || || || | ||| || || ||||| || ||||| | Sbjct 3005847 CCACCTCTGAGGCGGAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 3005788 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || ||||| | || ||||| || |||||||| | ||| || || Sbjct 3005787 AGGGTACGACCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGA 3005728 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||| ||||| ||||| || || || || || || || | || || | || || Sbjct 3005727 ATGCCTTCCTTATCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACC 3005668 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||||| ||||| ||||| || ||||||||||| ||||| ||||||||| Sbjct 3005667 TCGAGGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATT 3005620 >seq2558 Length=10987700 Score = 105 bits (116), Expect = 2e-17 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 ||||| ||||| || ||||| | ||| ||| | || ||||| | ||||| || || || Sbjct 486447 TCTTTGTGGATGTTGTAGTCTGAGAGAGTGTGGCCATCTTCCAGCTGTTTGCCGGCAAAT 486388 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||||||||| || | |||||| || || || || || ||||| ||||| ||||| Sbjct 486387 ATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGAATTTTGGCTTTGACGTTC 486328 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || |||| || || | || || || || ||||| || || || || || ||||| Sbjct 486327 TCAATAGTGTCACTGGGCTCGACCTCAAGGGTGATGGTTTTGCCCGTGAGGGTCTTTGTA 486268 Query 288463 AATATCTGCAT 288473 || |||||||| Sbjct 486267 AAGATCTGCAT 486257 >seq11015 Length=12620302 Score = 104 bits (114), Expect = 6e-17 Identities = 143/199 (72%), Gaps = 6/199 (3%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 |||||| ||||| || ||||| | || ||||| || ||||| | || | ||||| || Sbjct 5158836 TTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCATGCCTGCAAA 5158895 Query 288342 GATCAGACGCTGTTGAGAATCTGGGA---TTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398 ||| || | ||| || || |||| | ||||| ||||||||||| || || ||||| Sbjct 5158896 GATGAGCCTCTGCTGG---TCGGGGAAGATGCCTTCCTTATCCTGGATATTGGCCTTCAC 5158952 Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458 ||||| || | || || | || || || || ||||| ||||| | ||||| ||||| Sbjct 5158953 ATTTTCGATGGTGTCACTGGGCTCCACATCAAGGGTGATGGTCTTGTCAGTCAGGGTCTT 5159012 Query 288459 GACGAATATCTGCATTATG 288477 ||||| | | ||||| || Sbjct 5159013 CACGAAGACCAGCATTTTG 5159031 >seq10903 Length=19515036 Score = 96.9 bits (106), Expect = 8e-15 Identities = 157/228 (69%), Gaps = 11/228 (5%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||||||| ||| || ||||| || || ||||| | Sbjct 16763643 CCACCACGAAGTCTCAACACAAGATGAAGCGTAGACTCCTTTTGAATGTTGTAGTCAGAC 16763702 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| ||||| || || || |||||||| | || ||| | || Sbjct 16763703 A-----------TCTTCCAATTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 16763751 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || ||||| | | || | ||| || Sbjct 16763752 ATTCCTTCCTTATCCTGGATATTGGCCTTTACAGTTTCTGTTGTATTCAAGGGTTCAACC 16763811 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || ||||| |||||||| || || || || ||||| ||||||||| Sbjct 16763812 TCAAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCATT 16763859 Score = 96.9 bits (106), Expect = 8e-15 Identities = 157/228 (69%), Gaps = 11/228 (5%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || ||||| | || ||||||| ||| || ||||| || || ||||| | Sbjct 16768564 CCACCACGAAGTCTCAACACAAGATGAAGCGTAGACTCCTTTTGAATGTTGTAGTCAGAC 16768623 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | ||||| ||||| || || || |||||||| | || ||| | || Sbjct 16768624 A-----------TCTTCCAATTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 16768672 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || ||||| | | || | ||| || Sbjct 16768673 ATTCCTTCCTTATCCTGGATATTGGCCTTTACAGTTTCTGTTGTATTCAAGGGTTCAACC 16768732 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || || ||||| |||||||| || || || || ||||| ||||||||| Sbjct 16768733 TCAAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCATT 16768780 >seq7115 Length=1795964 Score = 93.3 bits (102), Expect = 1e-13 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||||| | | ||||||| || || ||||| || || |||| | Sbjct 164089 CCACCACAAAGTCTCAACAAAAGATGAAGAGTAGACTCCTTTTGAATGTTGCAGTCAGAC 164030 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||||| ||||| | ||| | || || |||||||| | || ||| | || Sbjct 164029 AAAGTACGTCCATCTTCCAGTTGCTCGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 163970 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| ||||||||||| || || || || |||||| | ||| | ||| || Sbjct 163969 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGCCGTATCTGAGGGTTCAACC 163910 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || || ||||| |||||||| | || || || || || ||||||||| || Sbjct 163909 TCAAGGGTGATAGTCTTCCCCCTTAGGGTTTTCACAAAAATCTGCATTTTG 163859 >seq4237 Length=27496150 Score = 86.0 bits (94), Expect = 1e-11 Identities = 159/231 (69%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| | ||||| | || ||||||| ||| || ||||| || || ||||| | Sbjct 25342143 CCACCAGGAAGTCTCAACACAAGATGAAGAGTGGGCTCCTTTTGAATGTTGTAGTCAGAC 25342084 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || | | ||| ||||| | ||| || || || ||||| || | ||| | | | || Sbjct 25342083 AG--TACATCCATCTTCCAGTTGCTTGCCAGCAAAGATTAGTCTCTGCTCATCAGGAGGA 25342026 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||||| ||||||||||| || || || || |||||||| ||| | ||| || Sbjct 25342025 ATTCCTTGCTTATCCTGGATCTTGGCCTTTACATTTTCTATCATATCCACGGGTTCGACC 25341966 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477 || | ||||| |||||||| || || | || | ||| |||||| || || Sbjct 25341965 TCAGGGGTGATGGTCTTCCCTGTAAG-GATTTTATGAAAATCTGCGTTTTG 25341916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179456039638072