Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201
5-03-12] 13,124 sequences; 2,970,124,662 total letters
Query= NC_009898.1
Length=368683
Score E
Sequences producing significant alignments: (Bits) Value
seq4805 138 3e-27
seq12126 132 1e-25
seq6459 132 1e-25
seq7038 123 6e-23
seq5149 123 6e-23
seq4138 114 3e-20
seq5126 109 1e-18
seq2558 105 2e-17
seq11015 104 6e-17
seq10903 96.9 8e-15
seq7115 93.3 1e-13
seq4237 86.0 1e-11
>seq4805
Length=5228064
Score = 138 bits (152), Expect = 3e-27
Identities = 169/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || ||||| | || ||||||| || || ||||| ||||| ||||| |
Sbjct 4473639 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 4473580
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| || ||||| ||||| | ||| || || || |||||||| | || ||| | ||
Sbjct 4473579 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 4473520
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|||||||| ||||||||||| || || || || |||||||| | ||| | ||| ||
Sbjct 4473519 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACC 4473460
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477
||||| ||||| |||||||| || || || || ||||| ||||||||| ||
Sbjct 4473459 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTTG 4473409
>seq12126
Length=7615049
Score = 132 bits (146), Expect = 1e-25
Identities = 168/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || ||||| | || ||||||| || || ||||| ||||| ||||| |
Sbjct 7457974 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 7457915
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| || ||||| ||||| | ||| || || || ||||||| | || ||| | ||
Sbjct 7457914 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTTTGCTGATCAGGAGGA 7457855
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|||||||| ||||||||||| || || || || |||||||| | ||| | ||| ||
Sbjct 7457854 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACC 7457795
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477
||||| ||||| |||||||| || || || || ||||| ||||||||| ||
Sbjct 7457794 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTTG 7457744
>seq6459
Length=16685579
Score = 132 bits (146), Expect = 1e-25
Identities = 168/231 (73%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || ||||| | || ||||||| || || ||||| ||||| ||||| |
Sbjct 968959 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 968900
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| || ||||| ||||| | ||| || || || ||||||| | || ||| | ||
Sbjct 968899 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTTTGCTGATCAGGAGGA 968840
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|||||||| ||||||||||| || || || || |||||||| | ||| | ||| ||
Sbjct 968839 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACC 968780
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477
||||| ||||| |||||||| || || || || ||||| ||||||||| ||
Sbjct 968779 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTTG 968729
>seq7038
Length=1003649
Score = 123 bits (136), Expect = 6e-23
Identities = 147/198 (74%), Gaps = 6/198 (3%)
Strand=Plus/Plus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
|| || ||||| || ||||| | || ||||| || ||||| | || || ||||| |||
Sbjct 394454 TCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 394513
Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399
|| || | ||| || || ||| || ||||| |||||||||||||| || |||||
Sbjct 394514 ATGAGCCTCTGCTGG---TCGGGGGGAATGCCTTCCTTATCCTGGATTTTGGCCTTCACA 394570
Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459
||||| || | || || | || || || || ||||| ||||| |||||||| |||||
Sbjct 394571 TTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTC 394630
Query 288460 ACGAATATCTGCATTATG 288477
||||| ||||||||| ||
Sbjct 394631 ACGAAGATCTGCATTCTG 394648
>seq5149
Length=2416856
Score = 123 bits (136), Expect = 6e-23
Identities = 166/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || ||||| | || ||||||| || || ||||| ||||| ||||| |
Sbjct 1496115 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 1496174
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| || ||||| ||||| | ||| || || || |||||||| | || ||| | ||
Sbjct 1496175 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 1496234
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|||||||| ||||||||||| || || || || |||||| | ||| | ||| ||
Sbjct 1496235 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGTCATATCCGAGGGTTCAACC 1496294
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477
| ||| ||||| |||||||| || || || || ||||| ||||||||| ||
Sbjct 1496295 TGGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTTG 1496345
>seq4138
Length=9750826
Score = 114 bits (126), Expect = 3e-20
Identities = 164/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || ||||| | | ||||||| || || ||||| ||||| ||||| |
Sbjct 3988029 CCACCACGAAGTCTCAACGCAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 3987970
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| || | ||| ||||| | ||| || || | |||||| | || |||| | ||
Sbjct 3987969 AAAGTCCATCCATCTTCCAGTTGCTTGCCAACAAAGATCCCTCTTTGCTGAGCAGGAGGA 3987910
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|||||||| ||||||||||| || || || || |||||||| | ||| | ||| ||
Sbjct 3987909 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGTTTCAACC 3987850
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477
||||| ||||| |||||||| | || || || ||||| ||||||||| ||
Sbjct 3987849 TCGAGGGTGATGGTCTTCCCCATAAGGGTTTTCACGAAAATCTGCATTTTG 3987799
Score = 95.1 bits (104), Expect = 3e-14
Identities = 138/192 (72%), Gaps = 10/192 (5%)
Strand=Plus/Minus
Query 288284 CTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGA 288343
|||| ||||| || ||||| | || ||| | | ||||| | || || ||||||||||
Sbjct 7362078 CTTTCTGGATTTTGTAGTCAGAAAGAGTGTGGACATCTTCCAGCTGCTTGCCTGCGAAGA 7362019
Query 288344 TCAGACGCTGTTGAGAATCTG---GGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGT 288400
| || | ||| || |||| |||| |||||||||||||||| || | ||||||||
Sbjct 7362018 TGAGCCTCTGCTG---GTCTGGGAGGATGTCTTCTTTATCCTGGATCTT-GGTTTCACGT 7361963
Query 288401 TTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGA 288460
|||| || || || | || || || ||||| ||||| || || |||||||| |
Sbjct 7361962 TTTCAATGCTGTCACT---GCCCACCTCCAGGGTGATGGTCTTGCCAGTGAGAGTCTTCA 7361906
Query 288461 CGAATATCTGCA 288472
| || |||||||
Sbjct 7361905 CAAAGATCTGCA 7361894
>seq5126
Length=8658521
Score = 109 bits (120), Expect = 1e-18
Identities = 161/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| | ||| | || || || || | ||| || || ||||| || ||||| |
Sbjct 3005847 CCACCTCTGAGGCGGAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 3005788
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| || || || ||||| | || ||||| || |||||||| | ||| || ||
Sbjct 3005787 AGGGTACGACCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGA 3005728
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|| ||||| ||||| ||||| || || || || || || || | || || | || ||
Sbjct 3005727 ATGCCTTCCTTATCTTGGATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACC 3005668
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474
||||| ||||| ||||| || ||||||||||| ||||| |||||||||
Sbjct 3005667 TCGAGGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATT 3005620
>seq2558
Length=10987700
Score = 105 bits (116), Expect = 2e-17
Identities = 138/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342
||||| ||||| || ||||| | ||| ||| | || ||||| | ||||| || || ||
Sbjct 486447 TCTTTGTGGATGTTGTAGTCTGAGAGAGTGTGGCCATCTTCCAGCTGTTTGCCGGCAAAT 486388
Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402
||||||||||| || | |||||| || || || || || ||||| ||||| |||||
Sbjct 486387 ATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGAATTTTGGCTTTGACGTTC 486328
Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462
|| |||| || || | || || || || ||||| || || || || || |||||
Sbjct 486327 TCAATAGTGTCACTGGGCTCGACCTCAAGGGTGATGGTTTTGCCCGTGAGGGTCTTTGTA 486268
Query 288463 AATATCTGCAT 288473
|| ||||||||
Sbjct 486267 AAGATCTGCAT 486257
>seq11015
Length=12620302
Score = 104 bits (114), Expect = 6e-17
Identities = 143/199 (72%), Gaps = 6/199 (3%)
Strand=Plus/Plus
Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341
|||||| ||||| || ||||| | || ||||| || ||||| | || | ||||| ||
Sbjct 5158836 TTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCATGCCTGCAAA 5158895
Query 288342 GATCAGACGCTGTTGAGAATCTGGGA---TTCCTTCTTTATCCTGGATTTTCGCTTTCAC 288398
||| || | ||| || || |||| | ||||| ||||||||||| || || |||||
Sbjct 5158896 GATGAGCCTCTGCTGG---TCGGGGAAGATGCCTTCCTTATCCTGGATATTGGCCTTCAC 5158952
Query 288399 GTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTT 288458
||||| || | || || | || || || || ||||| ||||| | ||||| |||||
Sbjct 5158953 ATTTTCGATGGTGTCACTGGGCTCCACATCAAGGGTGATGGTCTTGTCAGTCAGGGTCTT 5159012
Query 288459 GACGAATATCTGCATTATG 288477
||||| | | ||||| ||
Sbjct 5159013 CACGAAGACCAGCATTTTG 5159031
>seq10903
Length=19515036
Score = 96.9 bits (106), Expect = 8e-15
Identities = 157/228 (69%), Gaps = 11/228 (5%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || ||||| | || ||||||| ||| || ||||| || || ||||| |
Sbjct 16763643 CCACCACGAAGTCTCAACACAAGATGAAGCGTAGACTCCTTTTGAATGTTGTAGTCAGAC 16763702
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| ||||| ||||| || || || |||||||| | || ||| | ||
Sbjct 16763703 A-----------TCTTCCAATTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 16763751
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|||||||| ||||||||||| || || || || ||||| | | || | ||| ||
Sbjct 16763752 ATTCCTTCCTTATCCTGGATATTGGCCTTTACAGTTTCTGTTGTATTCAAGGGTTCAACC 16763811
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474
|| || ||||| |||||||| || || || || ||||| |||||||||
Sbjct 16763812 TCAAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCATT 16763859
Score = 96.9 bits (106), Expect = 8e-15
Identities = 157/228 (69%), Gaps = 11/228 (5%)
Strand=Plus/Plus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| || ||||| | || ||||||| ||| || ||||| || || ||||| |
Sbjct 16768564 CCACCACGAAGTCTCAACACAAGATGAAGCGTAGACTCCTTTTGAATGTTGTAGTCAGAC 16768623
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| ||||| ||||| || || || |||||||| | || ||| | ||
Sbjct 16768624 A-----------TCTTCCAATTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 16768672
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|||||||| ||||||||||| || || || || ||||| | | || | ||| ||
Sbjct 16768673 ATTCCTTCCTTATCCTGGATATTGGCCTTTACAGTTTCTGTTGTATTCAAGGGTTCAACC 16768732
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474
|| || ||||| |||||||| || || || || ||||| |||||||||
Sbjct 16768733 TCAAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCATT 16768780
>seq7115
Length=1795964
Score = 93.3 bits (102), Expect = 1e-13
Identities = 159/231 (69%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| | ||||| | | ||||||| || || ||||| || || |||| |
Sbjct 164089 CCACCACAAAGTCTCAACAAAAGATGAAGAGTAGACTCCTTTTGAATGTTGCAGTCAGAC 164030
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
| || ||||| ||||| | ||| | || || |||||||| | || ||| | ||
Sbjct 164029 AAAGTACGTCCATCTTCCAGTTGCTCGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 163970
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
|||||||| ||||||||||| || || || || |||||| | ||| | ||| ||
Sbjct 163969 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGCCGTATCTGAGGGTTCAACC 163910
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477
|| || ||||| |||||||| | || || || || || ||||||||| ||
Sbjct 163909 TCAAGGGTGATAGTCTTCCCCCTTAGGGTTTTCACAAAAATCTGCATTTTG 163859
>seq4237
Length=27496150
Score = 86.0 bits (94), Expect = 1e-11
Identities = 159/231 (69%), Gaps = 3/231 (1%)
Strand=Plus/Minus
Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306
||||| | ||||| | || ||||||| ||| || ||||| || || ||||| |
Sbjct 25342143 CCACCAGGAAGTCTCAACACAAGATGAAGAGTGGGCTCCTTTTGAATGTTGTAGTCAGAC 25342084
Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366
|| | | ||| ||||| | ||| || || || ||||| || | ||| | | | ||
Sbjct 25342083 AG--TACATCCATCTTCCAGTTGCTTGCCAGCAAAGATTAGTCTCTGCTCATCAGGAGGA 25342026
Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426
||||||| ||||||||||| || || || || |||||||| ||| | ||| ||
Sbjct 25342025 ATTCCTTGCTTATCCTGGATCTTGGCCTTTACATTTTCTATCATATCCACGGGTTCGACC 25341966
Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG 288477
|| | ||||| |||||||| || || | || | ||| |||||| || ||
Sbjct 25341965 TCAGGGGTGATGGTCTTCCCTGTAAG-GATTTTATGAAAATCTGCGTTTTG 25341916
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1179456039638072
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