Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq5126 93.3 4e-14 seq6460 87.8 2e-12 >seq5126 Length=8658521 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| || ||||| || || || || || |||| | Sbjct 3005814 GACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGCTTTCCGGCA 3005755 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| ||||| || ||||| || || ||| ||| || | Sbjct 3005754 AAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTATCTTGGATCTTTGCCTTGACA 3005695 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | ||| ||||||| || | || || ||||||||||| || Sbjct 3005694 TTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGAGTCTTC 3005635 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 3005634 ACGAAGATCTGCAT 3005621 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||| || || ||||||||||| || || ||| || || || || || || | | Sbjct 3006042 GACTCTTTCTGGATGTTGTAGTCAGACAGCGTGCGCCCATCTTCCAGCTGCTTTCCAGCA 3005983 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | | ||| ||||| ||||| || ||||| ||||| ||| ||| || | Sbjct 3005982 AAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACA 3005923 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| | | ||| ||||||| || | || || |||||||| || || Sbjct 3005922 TTCTCGATGGTGTCGCTGGGCTCGACCTCGAGGGTAATGGTCTTGCCAGTCAGGGTCTTC 3005863 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 3005862 ACGAAGATCTGCAT 3005849 >seq6460 Length=10151297 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| ||| ||| |||| || | || | | | ||||| || || ||||||||||| Sbjct 3934064 GCCACCTTGCAGGAGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 3934123 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||| || || || || ||||| |||| | | || ||| |||| ||||| || || Sbjct 3934124 GAGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGATGCTGCTGGTCAGGTGG 3934183 Query 138507 TATACCTTCTTTGTCGGTG-ATTTTTTGTTT-TAATTGTTCCACGGTGTCGGTCGACTCC 138564 ||||| || |||| | || ||||| | ||| | ||| || | |||||| | | ||| Sbjct 3934184 GATACCCTCCTTGT-GTTGAATTTTGTCTTTGTCATT-CTCAATGGTGTCACTGGGCTCG 3934241 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 ||||| | || | ||||| || || || || || ||||| ||||||||| Sbjct 3934242 ACCTCAAGGGTGATGGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATG 3934292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496180988153280