Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201
5-03-12] 13,124 sequences; 2,970,124,662 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq5126 93.3 4e-14
seq6460 87.8 2e-12
>seq5126
Length=8658521
Score = 93.3 bits (102), Expect = 4e-14
Identities = 137/194 (71%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || ||||||||||| || ||||| || || || || || |||| |
Sbjct 3005814 GACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGCTTTCCGGCA 3005755
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| || | ||| ||||| ||||| || ||||| || || ||| ||| || |
Sbjct 3005754 AAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTATCTTGGATCTTTGCCTTGACA 3005695
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | |||||| | | ||| ||||||| || | || || ||||||||||| ||
Sbjct 3005694 TTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGAGTCTTC 3005635
Query 138601 ACAAAAATCTGCAT 138614
|| || ||||||||
Sbjct 3005634 ACGAAGATCTGCAT 3005621
Score = 84.2 bits (92), Expect = 2e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
||||| || || ||||||||||| || || ||| || || || || || || | |
Sbjct 3006042 GACTCTTTCTGGATGTTGTAGTCAGACAGCGTGCGCCCATCTTCCAGCTGCTTTCCAGCA 3005983
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| | | ||| ||||| ||||| || ||||| ||||| ||| ||| || |
Sbjct 3005982 AAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACA 3005923
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | ||||||| | | ||| ||||||| || | || || |||||||| || ||
Sbjct 3005922 TTCTCGATGGTGTCGCTGGGCTCGACCTCGAGGGTAATGGTCTTGCCAGTCAGGGTCTTC 3005863
Query 138601 ACAAAAATCTGCAT 138614
|| || ||||||||
Sbjct 3005862 ACGAAGATCTGCAT 3005849
>seq6460
Length=10151297
Score = 87.8 bits (96), Expect = 2e-12
Identities = 161/231 (70%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
||| ||| ||| |||| || | || | | | ||||| || || |||||||||||
Sbjct 3934064 GCCACCTTGCAGGAGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 3934123
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
| ||| || || || || ||||| |||| | | || ||| |||| ||||| || ||
Sbjct 3934124 GAGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGATGCTGCTGGTCAGGTGG 3934183
Query 138507 TATACCTTCTTTGTCGGTG-ATTTTTTGTTT-TAATTGTTCCACGGTGTCGGTCGACTCC 138564
||||| || |||| | || ||||| | ||| | ||| || | |||||| | | |||
Sbjct 3934184 GATACCCTCCTTGT-GTTGAATTTTGTCTTTGTCATT-CTCAATGGTGTCACTGGGCTCG 3934241
Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615
||||| | || | ||||| || || || || || ||||| |||||||||
Sbjct 3934242 ACCTCAAGGGTGATGGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATG 3934292
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496180988153280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |