Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq2558 105 5e-18 seq12126 100 2e-16 seq6459 100 2e-16 seq10903 95.1 9e-15 seq4805 95.1 9e-15 seq1 86.0 4e-12 seq11570 82.4 5e-11 seq5149 82.4 5e-11 >seq2558 Length=10987700 Score = 105 bits (116), Expect = 5e-18 Identities = 167/236 (71%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 |||||||||||| || || | || |||| || ||||| || |||||||| | | Sbjct 486485 TGCCACCTCGCAGGGGCAACACCAGGTGCGGGGTGGACTCTTTGTGGATGTTGTAGT--C 486428 Query 15008 TGAGA-ATTCTCG-CGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTT 15065 ||||| | | | | | ||||| | |||||||| || |||||| |||||| ||||| Sbjct 486427 TGAGAGAGTGTGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGG 486368 Query 15066 TGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125 ||| || || |||||||| ||||||| ||| || | || ||||| || || || Sbjct 486367 TGGGATACCCTCCTTGTCTTGAATTTTGGCTTTGACGTTCTCAATAGTGTCACTGGGCTC 486308 Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTG 15181 || || | ||| |||||||| || || || || ||| ||| || ||||| |||| Sbjct 486307 GACCTCAAGGGTGATGGTTTTGCCCGTGAGGGTCTTTGTAAAGATCTGCATGTTTG 486252 >seq12126 Length=7615049 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| || || | |||||| ||||| || ||||| || ||||| || Sbjct 7457974 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 7457915 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| | ||| |||||||| | ||||| | || || || ||| Sbjct 7457914 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTTTGCTGATCAGGAGGA 7457855 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| |||||| ||||||| ||||| ||| || Sbjct 7457854 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACC 7457795 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | ||| ||||| || || || || ||||| || ||||| ||||| || Sbjct 7457794 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 7457745 >seq6459 Length=16685579 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| || || | |||||| ||||| || ||||| || ||||| || Sbjct 968959 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 968900 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| | ||| |||||||| | ||||| | || || || ||| Sbjct 968899 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTTTGCTGATCAGGAGGA 968840 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| |||||| ||||||| ||||| ||| || Sbjct 968839 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACC 968780 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | ||| ||||| || || || || ||||| || ||||| ||||| || Sbjct 968779 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 968730 >seq10903 Length=19515036 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 11/227 (5%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| || || | |||||| ||||| || ||||| |||||||| || Sbjct 16763643 CCACCACGAAGTCTCAACACAAGATGAAGCGTAGACTCCTTTTGAATGTTGTAGTC---- 16763698 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | ||||| ||||| |||||||| | |||| | || || || ||| Sbjct 16763699 AGA-------CATCTTCCAATTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 16763751 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| |||||| ||||| | |||| ||| || Sbjct 16763752 ATTCCTTCCTTATCCTGGATATTGGCCTTTACAGTTTCTGTTGTATTCAAGGGTTCAACC 16763811 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| ||||| || ||||| || ||||| || ||||| ||||| Sbjct 16763812 TCAAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCAT 16763858 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 11/227 (5%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| || || | |||||| ||||| || ||||| |||||||| || Sbjct 16768564 CCACCACGAAGTCTCAACACAAGATGAAGCGTAGACTCCTTTTGAATGTTGTAGTC---- 16768619 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | ||||| ||||| |||||||| | |||| | || || || ||| Sbjct 16768620 AGA-------CATCTTCCAATTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 16768672 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| |||||| ||||| | |||| ||| || Sbjct 16768673 ATTCCTTCCTTATCCTGGATATTGGCCTTTACAGTTTCTGTTGTATTCAAGGGTTCAACC 16768732 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| ||||| || ||||| || ||||| || ||||| ||||| Sbjct 16768733 TCAAGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCAT 16768779 >seq4805 Length=5228064 Score = 95.1 bits (104), Expect = 9e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| || || | |||||| ||||| || ||||| || ||||| || Sbjct 4473639 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 4473580 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| | ||| |||||||| | |||| | || || || ||| Sbjct 4473579 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 4473520 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| |||||| ||||||| ||||| ||| || Sbjct 4473519 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACC 4473460 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | ||| ||||| || || || || ||||| || ||||| ||||| || Sbjct 4473459 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 4473410 >seq1 Length=19716903 Score = 86.0 bits (94), Expect = 4e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || ||| || || | |||||| ||||| || ||||| || ||||| || Sbjct 12236678 CCACCACGAGGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 12236737 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| | ||| |||||||| | ||||| | || || || ||| Sbjct 12236738 AAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTTTGCTGATCAGGAGGA 12236797 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||||| || || ||| |||||| ||||| | ||||| ||| || Sbjct 12236798 ATTCCTTCCTCATCCTGGATCTTGGCCTTTACATTTTCTGTCGTATCCGAGGGTTCAACC 12236857 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | ||| ||||| || || || || ||||| || ||||| ||||| || Sbjct 12236858 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 12236907 >seq11570 Length=13276302 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| || || | |||||| ||||| || ||||| || ||||| || Sbjct 11748922 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 11748981 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| | ||| |||||||| | |||| | || || || ||| Sbjct 11748982 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 11749041 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| |||||| ||||||| ||||| ||| | Sbjct 11749042 ATTCCTTCCTTCTCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAGCC 11749101 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 || | ||| ||||| | || || || ||||| | ||||| ||||| || Sbjct 11749102 TCAAGGGTGATGGTCTGCCCCGTAAGGGTTTTCATGAAAATCTGCATTTT 11749151 >seq5149 Length=2416856 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||| || || | |||||| ||||| || ||||| || ||||| || Sbjct 1496115 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 1496174 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 | | | | | ||||| | ||| |||||||| | |||| | || || || ||| Sbjct 1496175 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 1496234 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || ||| |||||| ||||| | |||| ||| || Sbjct 1496235 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGTCATATCCGAGGGTTCAACC 1496294 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179 | | ||| ||||| || || || || ||||| || ||||| ||||| || Sbjct 1496295 TGGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 1496344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357334835596340