Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq5126 86.0 6e-12 seq2558 82.4 7e-11 >seq5126 Length=8658521 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| || ||||| || || ||||| ||||| || || || | ||| | ||| || Sbjct 3005830 CACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTC 3005771 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 || || ||||| || | |||| | |||||||| || ||||||||||| |||||||| Sbjct 3005770 CAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTATCTTG 3005711 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 || ||| |||| || | |||||| | ||| || ||||| || | || || Sbjct 3005710 GATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTT 3005651 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || ||||| || || || || ||||| Sbjct 3005650 GCCAGTCAGAGTCTTCACGAAGATCTGCAT 3005621 >seq2558 Length=10987700 Score = 82.4 bits (90), Expect = 7e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATC 45187 |||||| || ||| | || || || || ||||| || || || || || | ||| Sbjct 486469 CAACACCAGGTGCGGGGTGGACTCTTTGTGGATGTTGTAGTCTGAGAGAGTGTGGCCATC 486410 Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247 |||| ||||| || || |||||| || |||||||| || || || || || || || Sbjct 486409 TTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTC 486350 Query 45248 TTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCG 45306 ||||||||| ||||| || | || | ||||| | |||||| || || || | | Sbjct 486349 TTGAATTTTGGCTTTGA-CGTTCTCAATAGTGTCACTGGGCTCGACCTCAAGGGTGATGG 486291 Query 45307 TTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||||| || || || ||| ||| || ||||| Sbjct 486290 TTTTGCCCGTGAGGGTCTTTGTAAAGATCTGCAT 486257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451929048875040