Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq6460 140 2e-28 seq2558 125 5e-24 seq5126 123 2e-23 seq11570 111 1e-19 seq10792 104 2e-17 seq6583 104 2e-17 seq11792 100 2e-16 seq8348 98.7 6e-16 seq3960 96.9 2e-15 seq7038 87.8 1e-12 >seq6460 Length=10151297 Score = 140 bits (154), Expect = 2e-28 Identities = 163/218 (75%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||| ||| | ||| |||||||| ||||| ||||| || || | || |||| Sbjct 3934079 CAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATC 3934138 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 ||||||||||| ||||||||||| || | |||||||| | || | |||||||||| Sbjct 3934139 TTCCAGCTGTTTGCCGGCAAATATCAGATGCTGCTGGTCAGGTGGGATACCCTCCTTGTG 3934198 Query 34889 GCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 ||| || | |||| | || || || | |||| || ||| || || | ||| ||| Sbjct 3934199 TTGAATTTTGTCTTTGTC--ATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATG 3934256 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||||| |||||||| |||||||||||||||||||| || Sbjct 3934257 GTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTT 3934294 >seq2558 Length=10987700 Score = 125 bits (138), Expect = 5e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 ||||| || ||||| ||||| || || | | |||| ||||||||||| ||||||||| Sbjct 486447 TCTTTGTGGATGTTGTAGTCTGAGAGAGTGTGGCCATCTTCCAGCTGTTTGCCGGCAAAT 486388 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| ||| || ||||||| Sbjct 486387 ATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGAATTTTGGCTTTGACGTTC 486328 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||| || || | ||| |||||||| |||||||| ||||| | Sbjct 486327 TCAATAGTGTCACTGGGCTCGACCTCAAGGGTGATGGTTTTGCCCGTGAGGGTCTTTGTA 486268 Query 34971 AAGATCTGCATATTCGT 34987 ||||||||||| || || Sbjct 486267 AAGATCTGCATGTTTGT 486251 >seq5126 Length=8658521 Score = 123 bits (136), Expect = 2e-23 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || |||||||| | || |||||||| | ||| |||||||| ||||| || || || Sbjct 3006303 CCCCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAATCAGAC 3006244 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | ||| |||| ||||||||||| || ||||| || | | |||||||| | || Sbjct 3006243 AGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGG 3006184 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAA 34932 | || |||||||| |||||| ||||| || || || | || | || ||| | Sbjct 3006183 ATGCCTTCCTTGTCCTGAATCTTTGCCTTGAC--ATTCTCAATGGTGTCGCTGGGCTCGA 3006126 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | |||| ||| ||||| || || || || |||||||| ||||||||||| Sbjct 3006125 CCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 3006077 Score = 118 bits (130), Expect = 7e-22 Identities = 154/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || ||| | || |||| ||| Sbjct 3005829 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCC 3005770 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| ||||||||||| || || | |||||||| | || | || ||||| || Sbjct 3005769 AGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTATCTTGG 3005710 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | |||| || |||||| |||| ||| ||||| | Sbjct 3005709 ATCTTTGCCTTGAC--ATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCT 3005652 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || ||||||||||| ||||||||||| Sbjct 3005651 TGCCAGTCAGAGTCTTCACGAAGATCTGCAT 3005621 Score = 100 bits (110), Expect = 2e-16 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| |||||||| ||||| ||||| || || | || |||| ||| Sbjct 3006057 ACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGCGTGCGCCCATCTTCC 3005998 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| ||||| ||||| || | | |||||||| | || | || |||||||| Sbjct 3005997 AGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGG 3005938 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | || | || ||| || |||| ||| ||||| | Sbjct 3005937 ATCTTTGCCTTGAC--ATTCTCGATGGTGTCGCTGGGCTCGACCTCGAGGGTAATGGTCT 3005880 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || || |||||||| ||||||||||| Sbjct 3005879 TGCCAGTCAGGGTCTTCACGAAGATCTGCAT 3005849 >seq11570 Length=13276302 Score = 111 bits (122), Expect = 1e-19 Identities = 156/217 (72%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 || ||||| ||| || ||| | ||| || ||||| ||||| || || | || |||| Sbjct 889445 CAGAACCAGGTGCATGGTGGACTGTTTTTGGATGTTGTAGTCTGAGAGAGTGCGGCCATC 889504 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 |||||||| || || |||||||| || | |||||||| | || | ||||||||||| Sbjct 889505 CTCCAGCTGCTTGCCAGCAAATATCAGATGCTGCTGGTCAGGTGGGATACCCTCCTTGTC 889564 Query 34889 GCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 ||| || ||||| || || | | | || || ||| || || | ||| ||| Sbjct 889565 TTGAATTTTGGCTTTGA--AATTCTCAGTGGTGTAACTGGGCTCGACCTCAAGGGTGATG 889622 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATAT 34983 || || |||||||| ||||||||||||| |||||||| Sbjct 889623 GTCTTGCCCGTGAGGGTCTTCACAAAGAGCTGCATAT 889659 >seq10792 Length=8297812 Score = 104 bits (114), Expect = 2e-17 Identities = 153/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| |||| ||| ||||| ||||| || || || || |||| ||| Sbjct 3779114 ACCAGGTGCAGGGTGGACTCTTCCTGGATGTTCTAGTCTGAGAGACTGCGGCCATCCTCC 3779173 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||||| || |||||||| || | |||||||| || | | ||||||||||| Sbjct 3779174 GGCTGTTTGCCCGCAAATATCAGACACTGCTGGTCAGGCAGGATGCCCTCCTTGTCTTGG 3779233 Query 34893 ATCTTCTG-TTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 || ||| | |||||| || || | | ||| |||||| || || ||| ||||| Sbjct 3779234 AT-TTCGGCTTTGAC--ATTCTCAGTGGTGTCAGTGGCCTCCACCTCAGGGGTGATGGTC 3779290 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||| |||| || ||||||||||||||||| Sbjct 3779291 TTGCCCATGAGGGTGTTCACAAAGATCTGCAT 3779322 >seq6583 Length=2948085 Score = 104 bits (114), Expect = 2e-17 Identities = 141/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||| |||| ||||| || || |||| |||| |||||||||| ||||||| | Sbjct 72648 TCTTTCCAGATGTCGTAGTCTGAGAGAGTTCGGCCATCCCCCAGCTGTTTGCCGGCAAGT 72707 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | ||||||||||| ||| || |||||| || Sbjct 72708 ATCAGATGCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGAATTTTGGCTTTGAC--AT 72765 Query 34911 GCT-ATCGAT-TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | | |||| || || || || | || ||||| || ||||| || ||||||| Sbjct 72766 CCTCATTGGTGTCACTGGGCTTGACCTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTCA 72825 Query 34969 CAAAGATCTGCAT 34981 ||||||||||||| Sbjct 72826 CAAAGATCTGCAT 72838 >seq11792 Length=7415672 Score = 100 bits (110), Expect = 2e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| |||||||| || ||||| | | |||| |||| |||||| || ||||| Sbjct 6703193 TCTTTCTGGATGTTATAATCTGAAAGAGTGTGGCCATCCTCCAACTGTTTGCCCACAAAT 6703252 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | | | ||||||||||| ||||| |||||| | Sbjct 6703253 ATCAGATGCTGCTGGTCAGGTAGGATGCCCTCCTTGTCATGGATCTTGGCTTTGACATTT 6703312 Query 34911 GCTATCGAT-TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | || | |||| || || || || | ||| |||||| |||| ||||| ||||| || Sbjct 6703313 TC-ACCGGTGTCACTGGGCTGGACCTCAAAGGTGATGGTTCTTCCTGTGAGGGTCTTTAC 6703371 Query 34970 AAAGATCTGCAT 34981 | |||||||||| Sbjct 6703372 AGAGATCTGCAT 6703383 >seq8348 Length=12953760 Score = 98.7 bits (108), Expect = 6e-16 Identities = 139/192 (72%), Gaps = 5/192 (3%) Strand=Plus/Minus Query 34793 TTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATAT 34852 |||||| ||||| ||| | || || | | |||| || |||||||| || |||| ||| Sbjct 6562541 TTTCTGGATGTTGTAGCCTGAGAGAGTGTGGCCATCCTCTAGCTGTTTCCCAGCAAGTAT 6562482 Query 34853 TAGTCGTTGCTGGTCTTGCGGCAC-CCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATG 34911 || || |||||||| | || | |||||||||||| ||| || |||||| || Sbjct 6562481 CAGACGCTGCTGGTCAGGTGGGATACCCCTCCTTGTCTTGAATTTTGGCTTTGAC--ATT 6562424 Query 34912 CTA--TCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 ||| | | |||| || || | || | ||| ||||| || || ||||| |||||||| Sbjct 6562423 CTAAATGGTGTCACTGGGCTTGATCTCAAGGGTGATGGTCTTGCCTGTGAGGGTCTTCAC 6562364 Query 34970 AAAGATCTGCAT 34981 |||||||||||| Sbjct 6562363 AAAGATCTGCAT 6562352 >seq3960 Length=6554637 Score = 96.9 bits (106), Expect = 2e-15 Identities = 137/191 (72%), Gaps = 9/191 (5%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| |||| || || | || ||||||||||| || |||||| Sbjct 1989255 TCTTTCTGGATGTTGCAGTCTGAGAGAGTGCGGC-----TCCAGCTGTTTGCCCGCAAAT 1989309 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | ||||||||||| ||| || ||||| || Sbjct 1989310 ATCAGATGCTGCTGGTCAAGTGGAATGCCCTCCTTGTCTTGAATTTTGGCCTTGAC--AT 1989367 Query 34911 GCTA--TCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || | | |||| || ||| || |||| ||| ||||| || || ||||| ||||||| Sbjct 1989368 TCTCAGTGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTCA 1989427 Query 34969 CAAAGATCTGC 34979 ||||||||||| Sbjct 1989428 CAAAGATCTGC 1989438 >seq7038 Length=1003649 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| ||||| | || |||| |||||||| || || ||||| Sbjct 394454 TCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 394513 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | || ||||| || || || || || | Sbjct 394514 ATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGATTTTGGCCTTCACATTT 394573 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||| || || | ||| ||||| || || || || |||||||| Sbjct 394574 TCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 394633 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 394634 AAGATCTGCAT 394644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324581675261472