Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq3971 351 1e-91 seq5093 219 5e-52 seq7904 116 4e-21 seq2336 111 2e-19 seq6727 98.7 1e-15 seq10655 82.4 9e-11 >seq3971 Length=4903791 Score = 351 bits (388), Expect = 1e-91 Identities = 650/943 (69%), Gaps = 28/943 (3%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || ||| ||||||| | ||||||||||||| || || || || |||||||| Sbjct 744300 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG--TTGGACTTGACACCACTCCCATC 744357 Query 18670 TTTTGATATTCGGCA--ACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATAC 18727 | ||||| || | ||||| || |||||||| || || |||| | ||| ||| Sbjct 744358 CTCTGATACTCTCCCTTACTCTCTTCTCAAAGAAGTTCGTCTTTC-----AGTGAAATAT 744412 Query 18728 ATTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATA 18787 |||||||| |||||||| || | ||| | | | || | || || | ||| | | Sbjct 744413 TCTCCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCAGCA 744472 Query 18788 GTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTA 18847 |||| || || ||||| | ||| || ||||| | | |||||||| || || Sbjct 744473 T--GTCTGTCTGCCACAAACTCAATGCATTGCTTCATTAGAGTGCAATTCATCCCAATAG 744530 Query 18848 ATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATA-TA 18906 || ||||| | || || || || ||||| |||||||| || || | ||||| | Sbjct 744531 GCTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCAT-TGATAATT 744589 Query 18907 ATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCA 18966 || | ||||| || || || || || || ||||| ||||||| || ||| Sbjct 744590 ATTTCTCTTACTCTCTCCTCCAGTGGTTTGTGTACCAGGTGTTTGAACATCAGGCAAGCA 744649 Query 18967 AAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGC 19026 |||||||| |||| ||||| ||||| || || | |||||| |||||||| | |||||| Sbjct 744650 AAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGC 744709 Query 19027 ATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCT 19086 |||||||||| ||| || | ||||||||| || ||||| | ||||||||| || ||| Sbjct 744710 ATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAG---ATGCCT 744766 Query 19087 TCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCAT 19146 ||| |||| ||||| | || | | ||| ||||| |||| || || | |||||| Sbjct 744767 TCTGCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTGTCCCCAATCCAG 744826 Query 19147 TTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGA 19206 | || |||||||| |||||||| || ||||| ||||| || || || | ||| | ||| Sbjct 744827 TGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAGGAGA 744886 Query 19207 TACATACGCTCATCTGTATCTTTAACATATGCATCTATCAAT----AAACTGTACATTTC 19262 | | || | | |||||| |||| | | ||||| ||||| |||||||| Sbjct 744887 AATTCCCTTTCTTTGGGATCTTT----TATGTAAGTGTCAATACGGAAACTATACATTTC 744942 Query 19263 TGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTG 19322 ||||| || |||||||| || || || || || | ||||| | |||||||| ||||| Sbjct 744943 AGAATGTATGTTTTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCATCTG 745002 Query 19323 TACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAA 19382 ||||| | ||||| || ||||| |||||||| ||||| |||||||| |||||||| Sbjct 745003 AACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAA 745062 Query 19383 AAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT-CCAATCAT 19441 || | | | ||| ||||||| | | || || | | || | | ||| ||| | Sbjct 745063 GAAAACCAGAATATGAGATATAAAATCTCTCTCCTC-GGGCTTCAGGGATTCCCAGTGCC 745121 Query 19442 TAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTAT 19501 || || || || | || || || || | ||||| || ||||| || || || |||| Sbjct 745122 AAACGTCCTTGGACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTAT 745181 Query 19502 ACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 |||| | ||| |||||| | || | || || || || ||||| Sbjct 745182 ACATCTGCCAGATATCATGGTACTCGATGGGGAAGATGACAAA 745224 >seq5093 Length=2087638 Score = 219 bits (242), Expect = 5e-52 Identities = 392/564 (70%), Gaps = 14/564 (2%) Strand=Plus/Plus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || ||||| | ||| |||| ||||| || || || || | |||||| |||||||| | Sbjct 528962 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 529021 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAAT 19080 |||||||||||||||| ||| || | |||| |||| ||||| || ||||||||| | Sbjct 529022 CCAGGCATCAGTCCTCGTTTCTTGAGCCAGGATATCAGTGCAAAAGAACCAGAAAAGCAG 529081 Query 19081 ATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGA 19140 | | |||| || ||||| || | | | |||||||| | || | || || || | Sbjct 529082 GTGCTTTCT-CTAGGGCAAACGCTGCAACACGTTCTCCATGAGTAACGTCTTTGTTCCCA 529140 Query 19141 ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTA 19200 ||||| | || ||||| | |||||||| || ||||| |||||||| || || | ||| Sbjct 529141 ATCCAATACAAGACCCAAACTGCCTTCTTCTTGACACA-GGCATTGTTTCAATGGCATTG 529199 Query 19201 AATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATT 19260 || || | || | | | |||||||| || || || || | | ||| | || Sbjct 529200 AAGAG----AAACTCCCTTTGTTATCTTTA--ATGTGTGTCAATAAGGAGACTATTTATG 529253 Query 19261 TCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATC 19320 || | ||| || ||||||||||| || || || || || || || | |||||| ||| Sbjct 529254 TCAGCATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAATC 529313 Query 19321 TGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCA 19380 || | ||| | |||| ||| ||||| ||||||| ||||| ||||||| |||||| Sbjct 529314 TGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCTGCA 529373 Query 19381 AAAAATGC--TAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT-CCAA 19437 || || || |||||| | | ||||||| | |||| || | | || | | || ||| Sbjct 529374 AAGAAAGCCAGAATACAGGAT--ATAAAATATCTTTCCTCAG-GCTTCAGGGCTTCCCAG 529430 Query 19438 TCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTT 19497 | ||| || || || | || ||||| | | |||| |||||| ||||| |||| Sbjct 529431 TGCCAAATGTCCTTGGACAGGTCCACTTCCTGGGCCATCCAGAAAGAAACCTCTACTTTC 529490 Query 19498 TTATACATGTTCCATATATCACGA 19521 |||||| | ||||| |||||| || Sbjct 529491 TTATACGTTTTCCAAATATCATGA 529514 >seq7904 Length=13651311 Score = 116 bits (128), Expect = 4e-21 Identities = 100/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| |||||||| | |||||||||||||||| ||| | Sbjct 3487596 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 3487655 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || || |||||||| || ||||| ||||| ||||| | Sbjct 3487656 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 3487715 Query 19103 CAAC 19106 | || Sbjct 3487716 CTAC 3487719 Score = 105 bits (116), Expect = 8e-18 Identities = 112/146 (77%), Gaps = 4/146 (3%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || ||| ||||||| | ||||||||||||| || || || ||| |||||||| Sbjct 3485446 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCT--GTTGGACTTGACATCACTCCCATC 3485503 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||| ||| | ||||| || |||||||| ||||| ||||| || | ||| ||| Sbjct 3485504 CTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTC 3485563 Query 18730 TCCATAAAATCAAATGGATTTTTTAC 18755 |||||||| |||||||| || | ||| Sbjct 3485564 TCCATAAAGTCAAATGGGTTCTCTAC 3485589 >seq2336 Length=9258750 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| || || | |||||| ||||| || | || ||||| || ||||| || ||| Sbjct 5792327 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCTTT 5792268 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||||||||||| |||||| ||||| || ||||| || |||||||| || ||||| || Sbjct 5792267 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 5792208 Query 19105 ACTAGTCTTTCTCC 19118 || | |||||| || Sbjct 5792207 ACCACTCTTTCCCC 5792194 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732 ||||| || | ||||| ||| ||||||||||| |||||||| ||||| || || |||| Sbjct 5801348 TGATACTCCGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCC 5801289 Query 18733 ATAAAATCAAATGGATTTT 18751 ||||||||||| ||||||| Sbjct 5801288 ATAAAATCAAAAGGATTTT 5801270 >seq6727 Length=1359887 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | ||||| || |||| ||||| || || || ||||| || || Sbjct 309612 TGAAATTCTCCTGACAAAACTCTGCGAGTATAGATATTGCTGGTGTAAGGTTCAATGGAC 309671 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 |||||||| || | || |||||||| || ||||||||||| | |||| | ||| || Sbjct 309672 TCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAACTG 309731 Query 47448 TTTCTTACTCCATA 47461 ||||||| ||||| Sbjct 309732 TTTCTTATACCATA 309745 >seq10655 Length=1710 Score = 82.4 bits (90), Expect = 9e-11 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 || || | ||| || | || ||||| |||||| ||||||| ||||| || | | ||| Sbjct 602 GTACCAGCATTGAAGAGAGTGGGAGAAGCATGAGTAAACCACTTCTCAGAAAGAAGATTA 543 Query 48660 TATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCATTAAC 48719 ||||||||||| | | ||| || || || || || || | |||||| | ||| ||| Sbjct 542 TATGTTTCAATTGCTGCATCAATGTCTTCTTTGTGGATCCCAACAGATACTCTCATCAAC 483 Query 48720 ATATATTGAGGTCTTTCA 48737 |||| ||| ||||||||| Sbjct 482 ATATGTTGTGGTCTTTCA 465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562016586051360