Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201
5-03-12] 13,124 sequences; 2,970,124,662 total letters
Query= NC_016448.1
Length=196691
Score E
Sequences producing significant alignments: (Bits) Value
seq6982 251 9e-62
seq5949 199 5e-46
seq4660 98.7 1e-15
seq10604 95.1 2e-14
seq3727 95.1 2e-14
seq4638 91.5 2e-13
seq4649 82.4 1e-10
>seq6982
Length=1378770
Score = 251 bits (278), Expect = 9e-62
Identities = 250/324 (77%), Gaps = 0/324 (0%)
Strand=Plus/Plus
Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937
|| || |||| | |||| ||||| ||||| ||||||||||| || |||||||| ||||
Sbjct 990520 GTTTCACAAAGCCGCTCAACCCCACTGATGGTGAATGGGGTTCTGGGGGAGTCAGTAATT 990579
Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGC 1997
|| |||||||| ||||| ||||| ||||||||| |||||||||| |||| | ||| ||
Sbjct 990580 CTTCCCCTGGAGTTTCCTGCGGGAGAGAAGATCCAGTCCATCACTTGGCTTTGCAATGGA 990639
Query 1998 ACCTCCATCGCCTTTATTGCCCCCTCGGAGGCCAAGAGCCCCCAGATCCACCTAACCAAT 2057
|| || | ||||| || | | ||| || |||| || || || |||||| | || ||
Sbjct 990640 ACATCTCTTGCCTTCATAGTACTCTCTGAAACCAACAGTCCACAAATCCACGTGACTCAT 990699
Query 2058 CCGAAACTGGGCAAGCGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAACCTA 2117
|| |||| | | || ||||| ||||||| |||||||||||||| |||| ||||||||
Sbjct 990700 CCTAAACAGCGAAACCGACTGAACTTCATCCAGTCCTACTCCCTGAAACTCAGCAACCTG 990759
Query 2118 GAGATGGAAGACACCGGGTCCTACAGTGCCCTGATGTCCTCCGAGACCACAGTTAACGTT 2177
|||||||||||||| || || |||||||||| ||| || | |||||| | | || |
Sbjct 990760 GAGATGGAAGACACAGGCTCTTACAGTGCCCAGATAACCACAGAGACCTCTGCAAAGCTG 990819
Query 2178 TCCAGCTACACGCTGAGGATCTTC 2201
||||| || || |||||||| |||
Sbjct 990820 TCCAGTTATACTCTGAGGATATTC 990843
Score = 228 bits (252), Expect = 1e-54
Identities = 204/256 (80%), Gaps = 0/256 (0%)
Strand=Plus/Plus
Query 2206 AACTGAAGAACATTCAGGTGAGCAATCACAGTCAACTGTCTCAGAATCGGATCTGCGAGA 2265
|||||| |||||| || || | |||| ||||||| || | ||||||| ||| ||| ||||
Sbjct 995821 AACTGAGGAACATACAAGTTAACAATTACAGTCAGCTATTTCAGAATAGGACCTGTGAGA 995880
Query 2266 TCCATCTGACCTGTTCTGTCGAGGATCCCAATGACAACATCTCCTTCAAATGGGAGGCCT 2325
|||||||||| || ||||| |||||| | ||||||| |||| |||| |||||||||||
Sbjct 995881 TCCATCTGACTTGCTCTGTGGAGGATGCAGATGACAATGTCTCATTCAGATGGGAGGCCT 995940
Query 2326 TGGGCAAGACGCTTCTACGCGAGCCCAACCTCACGACCTCCTGGGACCCCAGGAACAGCA 2385
|||| | || ||| | | ||||| ||| |||| ||||||||||||||||||| ||
Sbjct 995941 TGGGAAGCACACTTTCAAGTGAGCCAAACATCACTACCTCCTGGGACCCCAGGATTTCCA 996000
Query 2386 GTGAGCAGAACTACACGTGCATCGCCGAAAACGCTGTGAGCAATCTCTCTTTCACGGTCT 2445
|||| ||| ||||||| ||||| || || || ||||| |||||| | || ||| | ||||
Sbjct 996001 GTGAACAGGACTACACCTGCATAGCAGAGAATGCTGTCAGCAATTTATCCTTCTCTGTCT 996060
Query 2446 CGGCCCAGAAGCTGTG 2461
| ||||||||||| ||
Sbjct 996061 CTGCCCAGAAGCTTTG 996076
Score = 98.7 bits (108), Expect = 1e-15
Identities = 73/85 (86%), Gaps = 4/85 (5%)
Strand=Plus/Plus
Query 2661 CACCTCAGACCAAAACATGCTAAACATAACACACCAGCA----GACTGACTCTTTGATAA 2716
||| |||| ||||||||||||||| |||||||||||||| |||| |||||||||||
Sbjct 1000638 CACTTCAGGCCAAAACATGCTAAAGATAACACACCAGCACATTGACTCTCTCTTTGATAA 1000697
Query 2717 ATAAGCTAATGGAATTATGGTTGAC 2741
||||| ||||||||| ||||||||
Sbjct 1000698 CTAAGCAAATGGAATTGTGGTTGAC 1000722
>seq5949
Length=1925306
Score = 199 bits (220), Expect = 5e-46
Identities = 236/324 (73%), Gaps = 17/324 (5%)
Strand=Plus/Minus
Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937
|| || |||| |||||| ||||| |||| ||||||||||| || |||||||| |||||
Sbjct 959870 GTTTCACAAAGCAGCTCAACCCCATTGATGGTGAATGGGGTTCTGGGGGAGTCAGTAACT 959811
Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGC 1997
|| |||||||| ||||| || || |||| |||| |||||||||| |||| | || ||
Sbjct 959810 CTTCCCCTGGAGTTTCCTGCAGGAGAGAGGATCCAGTCCATCACTTGGCTTTGCAGTGGG 959751
Query 1998 ACCTCCATCGCCTTTATTGCCCCCTCGGAGGCCAAGAGCCCCCAGATCCACCTAACCAAT 2057
|| || | ||||| || || | | || ||| || | || ||
Sbjct 959750 ACATCTTTTGCCTTCAT-----------------AGGGTACACAAATCTACGTGACTCAT 959708
Query 2058 CCGAAACTGGGCAAGCGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAACCTA 2117
|| ||| | |||| ||| ||| |||| ||||||||||||| ||||| ||||||||
Sbjct 959707 CCAAAATGGTAAAAGCAACTGAACCTCACCCAGTCCTACTCCCCGCAACTCAGCAACCTG 959648
Query 2118 GAGATGGAAGACACCGGGTCCTACAGTGCCCTGATGTCCTCCGAGACCACAGTTAACGTT 2177
|||||||||||||| || || |||||||||||||| || | |||||| | | || |
Sbjct 959647 GAGATGGAAGACACAGGCTCTTACAGTGCCCTGATAGCCACAGAGACCTCTGCGAAGCTA 959588
Query 2178 TCCAGCTACACGCTGAGGATCTTC 2201
||||| ||||| |||||||| |||
Sbjct 959587 TCCAGTTACACTCTGAGGATATTC 959564
>seq4660
Length=1829203
Score = 98.7 bits (108), Expect = 1e-15
Identities = 125/172 (73%), Gaps = 0/172 (0%)
Strand=Plus/Minus
Query 14196 CATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCTACCCATTTTTGAAACGTC 14255
||||||||||| ||||||||||||||| || || | |||| |||| || || || ||
Sbjct 7019 CATGTGTATCTCTGCTCTTCTCCAGAAGGCACCACCACAGCTGCCCACTTCTGGAAGGTT 6960
Query 14256 CCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGACTTTGATCTTCTCCGTCT 14315
||||| || ||||| | || || | |||| || || ||| |||| || || || ||
Sbjct 6959 CCATCCCCTGCTGGCCTGGTGTCCACAAGCTCAGTGTCCTGAGTTTGGTCCTCCCCATCC 6900
Query 14316 CGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAAGCCCAGCACC 14367
|| | ||| || | | | || || || || || || |||| ||||||||||
Sbjct 6899 CGCTGCCAGGTCAGTGTGATCTCCGCAGGGTAGAAGCCCAGGGCCCAGCACC 6848
Score = 95.1 bits (104), Expect = 2e-14
Identities = 124/172 (72%), Gaps = 0/172 (0%)
Strand=Plus/Minus
Query 14196 CATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCTACCCATTTTTGAAACGTC 14255
|| |||||||| ||||||||||||||| || || | |||| |||| || || || ||
Sbjct 125891 CACGTGTATCTCTGCTCTTCTCCAGAAGGCACCACCACAGCTGCCCACTTCTGGAAGGTT 125832
Query 14256 CCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGACTTTGATCTTCTCCGTCT 14315
|||||||| |||| | || || | |||| || || ||| |||| || || || ||
Sbjct 125831 CCATCTCCTCCTGGCCTGGTCTCCACAAGCTCAGTGTCCTGAGTTTGGTCCTCCCCATCC 125772
Query 14316 CGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAAGCCCAGCACC 14367
|| | ||| || | | | || || || || || || |||| ||||||||||
Sbjct 125771 CGCTGCCAGGTCAGTGTGATCTCCGCAGGGTAGAAGCCCAGGGCCCAGCACC 125720
Score = 89.7 bits (98), Expect = 6e-13
Identities = 123/172 (72%), Gaps = 0/172 (0%)
Strand=Plus/Minus
Query 14196 CATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCTACCCATTTTTGAAACGTC 14255
|| || ||||| ||||||||||||||| || || | |||| |||| || || | ||
Sbjct 97652 CACGTATATCTCTGCTCTTCTCCAGAAGGCACCACCACAGCTCCCCACTTCTGGTAGGTT 97593
Query 14256 CCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGACTTTGATCTTCTCCGTCT 14315
|||||||| ||||| | || || | |||| || || ||| |||| || || || ||
Sbjct 97592 CCATCTCCTGCTGGTCTGGTCTCCACAAGCTCCGTGTCCTGAGTTTGGTCCTCCCCATCC 97533
Query 14316 CGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAAGCCCAGCACC 14367
|| | ||| || | | | || || || || || || |||| ||||||||||
Sbjct 97532 CGCTGCCAGGTCAGTGTGATCTCCGCAGGGTAGAAGCCCAGGGCCCAGCACC 97481
Score = 82.4 bits (90), Expect = 1e-10
Identities = 137/198 (69%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 14170 CGGGTAAGCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGA 14229
|||||| || ||||| || || | || |||||||| ||| ||||||||||| || |
Sbjct 1190849 CGGGTAGCCCCTCATGCTGCACATGGCACGTGTATCTCTGCTCCTCTCCAGAAGGCACCA 1190908
Query 14230 CGATAGCTACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTG 14289
| | |||| |||| ||||| || || ||||| || || || | || || | |||| |
Sbjct 1190909 CCACAGCTGCCCACTTTTGGAAAGTTCCATCCCCTGCAGGCCTGGTCTCCACAAGCTCCG 1190968
Query 14290 TATCTTGACTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAA 14349
| || || | || || | || || || | ||| || | | | || || || || || |
Sbjct 1190969 TGTCCTGGGTCTGGTCCTTCCCATCCCGCTGCCAGGTCACTGTGATCTCCGCAGGGTAGA 1191028
Query 14350 AACCCAAAGCCCAGCACC 14367
| ||| ||||||||||
Sbjct 1191029 AGTCCAGGGCCCAGCACC 1191046
>seq10604
Length=105261
Score = 95.1 bits (104), Expect = 2e-14
Identities = 124/172 (72%), Gaps = 0/172 (0%)
Strand=Plus/Plus
Query 14196 CATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCTACCCATTTTTGAAACGTC 14255
|| |||||||| ||||||||||||||| || || | |||| |||| || || || ||
Sbjct 76406 CACGTGTATCTCTGCTCTTCTCCAGAAGGCACCACCACAGCTCCCCACTTCTGGAAGGTT 76465
Query 14256 CCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGACTTTGATCTTCTCCGTCT 14315
|||||||| |||| | || || | |||| || |||||| |||| || || | ||
Sbjct 76466 CCATCTCCTCCTGGCCTGGTCTCCACAAGCTCCGTGTCTTGAGTTTGGTCCTCCTCATCC 76525
Query 14316 CGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAAGCCCAGCACC 14367
|| | ||| || | | | || || || || || || |||| ||||||||||
Sbjct 76526 CGCTGCCAGGTCAGTGTGATCTCCGCAGGGTAGAATCCCAGGGCCCAGCACC 76577
>seq3727
Length=5698633
Score = 95.1 bits (104), Expect = 2e-14
Identities = 136/188 (72%), Gaps = 4/188 (2%)
Strand=Plus/Minus
Query 177663 AATCTAACCTACTCTACAAATGACACCTAAATCTCTATCAAGTGGTTCTTTAATAATCAA 177722
|| || |||| ||| ||||||||||| |||||| |||| |||||||| || | ||
Sbjct 5352671 AACCTGACCTGCTCCACAAATGACACTGGAATCTCCATCAGTTGGTTCTTCAAGGACCAG 5352612
Query 177723 AATATATCATCATCACAGAAAATAGAGCTGTGCCGGGACCATAAAACCCTCAGAATAGAC 177782
| | | | || || ||| || |||||| || |||| | | |||||||| ||| ||
Sbjct 5352611 AGTCTCCCGTCCTCGGAGAGGATGAAGCTGTCCCAGGACAACACCACCCTCAGCATAAAC 5352552
Query 177783 CCGGTC--GAGAGAGGAT-TTGGGACGACATCACTGTGAGGTCTCCAACCTCCTCAATGT 177839
|| ||| |||||||||| ||||| | ||| |||||||||| |||||| ||| |
Sbjct 5352551 CCTGTCAAGAGAGAGGATGCTGGGAAGTATTCA-TGTGAGGTCTTCAACCTAATCAGTAA 5352493
Query 177840 AAACCAAA 177847
|||||||
Sbjct 5352492 GAACCAAA 5352485
>seq4638
Length=1936607
Score = 91.5 bits (100), Expect = 2e-13
Identities = 134/190 (71%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237
|| ||||| || || | || |||||||| |||||||||||||| || || | ||||
Sbjct 15867 CCCTCATGCTGCACATGGCACGTGTATCTCTGCTCTTCTCCAGAAGACACCACCACAGCT 15926
Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297
|||| || || | || |||||||| |||| | || || | |||| || || |||
Sbjct 15927 CCCCACTTCTGGTAGGTTCCATCTCCTCCTGGCCTGGTCTCCACAAGCTCCGTGTCCTGA 15986
Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357
|||| || || || || || | ||| || | | | || || || || || || ||||
Sbjct 15987 GTTTGGTCCTCCCCATCCCGCTGCCAGGTCAGTGTGATCTCCGCAGGGTAGAAGCCCAGG 16046
Query 14358 GCCCAGCACC 14367
||||||||||
Sbjct 16047 GCCCAGCACC 16056
>seq4649
Length=3067355
Score = 82.4 bits (90), Expect = 1e-10
Identities = 132/190 (69%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237
|| ||||| || || | ||| |||||||| ||| ||||||||||| || || | |||
Sbjct 162552 CCCTCATGCTGCACATGACAGGTGTATCTCTGCTCCTCTCCAGAAGGCACCACCACAGCC 162493
Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297
|||| || || || || ||||| || | || | || || | |||| || || |||
Sbjct 162492 GCCCACTTCTGGAAGGTTCCATCCCCTGTAGGCCTGGTCTCCACGAGCTCCGTGTCCTGA 162433
Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357
|||| || ||||| || || | ||| || | | | || | || || || | ||||
Sbjct 162432 GTTTGTTCCTCTCCATCCCGCTGCCAGGTCAGTGTGATCCCCGCAGGGTAGTAGCCCAGG 162373
Query 14358 GCCCAGCACC 14367
||||||||||
Sbjct 162372 GCCCAGCACC 162363
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 629179966091040
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