Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq6982 251 9e-62 seq5949 199 5e-46 seq4660 98.7 1e-15 seq10604 95.1 2e-14 seq3727 95.1 2e-14 seq4638 91.5 2e-13 seq4649 82.4 1e-10 >seq6982 Length=1378770 Score = 251 bits (278), Expect = 9e-62 Identities = 250/324 (77%), Gaps = 0/324 (0%) Strand=Plus/Plus Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937 || || |||| | |||| ||||| ||||| ||||||||||| || |||||||| |||| Sbjct 990520 GTTTCACAAAGCCGCTCAACCCCACTGATGGTGAATGGGGTTCTGGGGGAGTCAGTAATT 990579 Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGC 1997 || |||||||| ||||| ||||| ||||||||| |||||||||| |||| | ||| || Sbjct 990580 CTTCCCCTGGAGTTTCCTGCGGGAGAGAAGATCCAGTCCATCACTTGGCTTTGCAATGGA 990639 Query 1998 ACCTCCATCGCCTTTATTGCCCCCTCGGAGGCCAAGAGCCCCCAGATCCACCTAACCAAT 2057 || || | ||||| || | | ||| || |||| || || || |||||| | || || Sbjct 990640 ACATCTCTTGCCTTCATAGTACTCTCTGAAACCAACAGTCCACAAATCCACGTGACTCAT 990699 Query 2058 CCGAAACTGGGCAAGCGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAACCTA 2117 || |||| | | || ||||| ||||||| |||||||||||||| |||| |||||||| Sbjct 990700 CCTAAACAGCGAAACCGACTGAACTTCATCCAGTCCTACTCCCTGAAACTCAGCAACCTG 990759 Query 2118 GAGATGGAAGACACCGGGTCCTACAGTGCCCTGATGTCCTCCGAGACCACAGTTAACGTT 2177 |||||||||||||| || || |||||||||| ||| || | |||||| | | || | Sbjct 990760 GAGATGGAAGACACAGGCTCTTACAGTGCCCAGATAACCACAGAGACCTCTGCAAAGCTG 990819 Query 2178 TCCAGCTACACGCTGAGGATCTTC 2201 ||||| || || |||||||| ||| Sbjct 990820 TCCAGTTATACTCTGAGGATATTC 990843 Score = 228 bits (252), Expect = 1e-54 Identities = 204/256 (80%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 2206 AACTGAAGAACATTCAGGTGAGCAATCACAGTCAACTGTCTCAGAATCGGATCTGCGAGA 2265 |||||| |||||| || || | |||| ||||||| || | ||||||| ||| ||| |||| Sbjct 995821 AACTGAGGAACATACAAGTTAACAATTACAGTCAGCTATTTCAGAATAGGACCTGTGAGA 995880 Query 2266 TCCATCTGACCTGTTCTGTCGAGGATCCCAATGACAACATCTCCTTCAAATGGGAGGCCT 2325 |||||||||| || ||||| |||||| | ||||||| |||| |||| ||||||||||| Sbjct 995881 TCCATCTGACTTGCTCTGTGGAGGATGCAGATGACAATGTCTCATTCAGATGGGAGGCCT 995940 Query 2326 TGGGCAAGACGCTTCTACGCGAGCCCAACCTCACGACCTCCTGGGACCCCAGGAACAGCA 2385 |||| | || ||| | | ||||| ||| |||| ||||||||||||||||||| || Sbjct 995941 TGGGAAGCACACTTTCAAGTGAGCCAAACATCACTACCTCCTGGGACCCCAGGATTTCCA 996000 Query 2386 GTGAGCAGAACTACACGTGCATCGCCGAAAACGCTGTGAGCAATCTCTCTTTCACGGTCT 2445 |||| ||| ||||||| ||||| || || || ||||| |||||| | || ||| | |||| Sbjct 996001 GTGAACAGGACTACACCTGCATAGCAGAGAATGCTGTCAGCAATTTATCCTTCTCTGTCT 996060 Query 2446 CGGCCCAGAAGCTGTG 2461 | ||||||||||| || Sbjct 996061 CTGCCCAGAAGCTTTG 996076 Score = 98.7 bits (108), Expect = 1e-15 Identities = 73/85 (86%), Gaps = 4/85 (5%) Strand=Plus/Plus Query 2661 CACCTCAGACCAAAACATGCTAAACATAACACACCAGCA----GACTGACTCTTTGATAA 2716 ||| |||| ||||||||||||||| |||||||||||||| |||| ||||||||||| Sbjct 1000638 CACTTCAGGCCAAAACATGCTAAAGATAACACACCAGCACATTGACTCTCTCTTTGATAA 1000697 Query 2717 ATAAGCTAATGGAATTATGGTTGAC 2741 ||||| ||||||||| |||||||| Sbjct 1000698 CTAAGCAAATGGAATTGTGGTTGAC 1000722 >seq5949 Length=1925306 Score = 199 bits (220), Expect = 5e-46 Identities = 236/324 (73%), Gaps = 17/324 (5%) Strand=Plus/Minus Query 1878 GTCTCCCAAACCAGCTCCACCCCGCTGATCGTGAATGGGGTGCTCGGGGAGTCCGTAACA 1937 || || |||| |||||| ||||| |||| ||||||||||| || |||||||| ||||| Sbjct 959870 GTTTCACAAAGCAGCTCAACCCCATTGATGGTGAATGGGGTTCTGGGGGAGTCAGTAACT 959811 Query 1938 CTGCCCCTGGAATTTCCCGCGGGCGAGAAGATCAAGTCCATCACCTGGCACTACAACGGC 1997 || |||||||| ||||| || || |||| |||| |||||||||| |||| | || || Sbjct 959810 CTTCCCCTGGAGTTTCCTGCAGGAGAGAGGATCCAGTCCATCACTTGGCTTTGCAGTGGG 959751 Query 1998 ACCTCCATCGCCTTTATTGCCCCCTCGGAGGCCAAGAGCCCCCAGATCCACCTAACCAAT 2057 || || | ||||| || || | | || ||| || | || || Sbjct 959750 ACATCTTTTGCCTTCAT-----------------AGGGTACACAAATCTACGTGACTCAT 959708 Query 2058 CCGAAACTGGGCAAGCGACTCAACTTCACGCAGTCCTACTCCCTACAACTGAGCAACCTA 2117 || ||| | |||| ||| ||| |||| ||||||||||||| ||||| |||||||| Sbjct 959707 CCAAAATGGTAAAAGCAACTGAACCTCACCCAGTCCTACTCCCCGCAACTCAGCAACCTG 959648 Query 2118 GAGATGGAAGACACCGGGTCCTACAGTGCCCTGATGTCCTCCGAGACCACAGTTAACGTT 2177 |||||||||||||| || || |||||||||||||| || | |||||| | | || | Sbjct 959647 GAGATGGAAGACACAGGCTCTTACAGTGCCCTGATAGCCACAGAGACCTCTGCGAAGCTA 959588 Query 2178 TCCAGCTACACGCTGAGGATCTTC 2201 ||||| ||||| |||||||| ||| Sbjct 959587 TCCAGTTACACTCTGAGGATATTC 959564 >seq4660 Length=1829203 Score = 98.7 bits (108), Expect = 1e-15 Identities = 125/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 14196 CATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCTACCCATTTTTGAAACGTC 14255 ||||||||||| ||||||||||||||| || || | |||| |||| || || || || Sbjct 7019 CATGTGTATCTCTGCTCTTCTCCAGAAGGCACCACCACAGCTGCCCACTTCTGGAAGGTT 6960 Query 14256 CCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGACTTTGATCTTCTCCGTCT 14315 ||||| || ||||| | || || | |||| || || ||| |||| || || || || Sbjct 6959 CCATCCCCTGCTGGCCTGGTGTCCACAAGCTCAGTGTCCTGAGTTTGGTCCTCCCCATCC 6900 Query 14316 CGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAAGCCCAGCACC 14367 || | ||| || | | | || || || || || || |||| |||||||||| Sbjct 6899 CGCTGCCAGGTCAGTGTGATCTCCGCAGGGTAGAAGCCCAGGGCCCAGCACC 6848 Score = 95.1 bits (104), Expect = 2e-14 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 14196 CATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCTACCCATTTTTGAAACGTC 14255 || |||||||| ||||||||||||||| || || | |||| |||| || || || || Sbjct 125891 CACGTGTATCTCTGCTCTTCTCCAGAAGGCACCACCACAGCTGCCCACTTCTGGAAGGTT 125832 Query 14256 CCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGACTTTGATCTTCTCCGTCT 14315 |||||||| |||| | || || | |||| || || ||| |||| || || || || Sbjct 125831 CCATCTCCTCCTGGCCTGGTCTCCACAAGCTCAGTGTCCTGAGTTTGGTCCTCCCCATCC 125772 Query 14316 CGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAAGCCCAGCACC 14367 || | ||| || | | | || || || || || || |||| |||||||||| Sbjct 125771 CGCTGCCAGGTCAGTGTGATCTCCGCAGGGTAGAAGCCCAGGGCCCAGCACC 125720 Score = 89.7 bits (98), Expect = 6e-13 Identities = 123/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 14196 CATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCTACCCATTTTTGAAACGTC 14255 || || ||||| ||||||||||||||| || || | |||| |||| || || | || Sbjct 97652 CACGTATATCTCTGCTCTTCTCCAGAAGGCACCACCACAGCTCCCCACTTCTGGTAGGTT 97593 Query 14256 CCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGACTTTGATCTTCTCCGTCT 14315 |||||||| ||||| | || || | |||| || || ||| |||| || || || || Sbjct 97592 CCATCTCCTGCTGGTCTGGTCTCCACAAGCTCCGTGTCCTGAGTTTGGTCCTCCCCATCC 97533 Query 14316 CGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAAGCCCAGCACC 14367 || | ||| || | | | || || || || || || |||| |||||||||| Sbjct 97532 CGCTGCCAGGTCAGTGTGATCTCCGCAGGGTAGAAGCCCAGGGCCCAGCACC 97481 Score = 82.4 bits (90), Expect = 1e-10 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 14170 CGGGTAAGCCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGA 14229 |||||| || ||||| || || | || |||||||| ||| ||||||||||| || | Sbjct 1190849 CGGGTAGCCCCTCATGCTGCACATGGCACGTGTATCTCTGCTCCTCTCCAGAAGGCACCA 1190908 Query 14230 CGATAGCTACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTG 14289 | | |||| |||| ||||| || || ||||| || || || | || || | |||| | Sbjct 1190909 CCACAGCTGCCCACTTTTGGAAAGTTCCATCCCCTGCAGGCCTGGTCTCCACAAGCTCCG 1190968 Query 14290 TATCTTGACTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAA 14349 | || || | || || | || || || | ||| || | | | || || || || || | Sbjct 1190969 TGTCCTGGGTCTGGTCCTTCCCATCCCGCTGCCAGGTCACTGTGATCTCCGCAGGGTAGA 1191028 Query 14350 AACCCAAAGCCCAGCACC 14367 | ||| |||||||||| Sbjct 1191029 AGTCCAGGGCCCAGCACC 1191046 >seq10604 Length=105261 Score = 95.1 bits (104), Expect = 2e-14 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 14196 CATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCTACCCATTTTTGAAACGTC 14255 || |||||||| ||||||||||||||| || || | |||| |||| || || || || Sbjct 76406 CACGTGTATCTCTGCTCTTCTCCAGAAGGCACCACCACAGCTCCCCACTTCTGGAAGGTT 76465 Query 14256 CCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGACTTTGATCTTCTCCGTCT 14315 |||||||| |||| | || || | |||| || |||||| |||| || || | || Sbjct 76466 CCATCTCCTCCTGGCCTGGTCTCCACAAGCTCCGTGTCTTGAGTTTGGTCCTCCTCATCC 76525 Query 14316 CGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAAGCCCAGCACC 14367 || | ||| || | | | || || || || || || |||| |||||||||| Sbjct 76526 CGCTGCCAGGTCAGTGTGATCTCCGCAGGGTAGAATCCCAGGGCCCAGCACC 76577 >seq3727 Length=5698633 Score = 95.1 bits (104), Expect = 2e-14 Identities = 136/188 (72%), Gaps = 4/188 (2%) Strand=Plus/Minus Query 177663 AATCTAACCTACTCTACAAATGACACCTAAATCTCTATCAAGTGGTTCTTTAATAATCAA 177722 || || |||| ||| ||||||||||| |||||| |||| |||||||| || | || Sbjct 5352671 AACCTGACCTGCTCCACAAATGACACTGGAATCTCCATCAGTTGGTTCTTCAAGGACCAG 5352612 Query 177723 AATATATCATCATCACAGAAAATAGAGCTGTGCCGGGACCATAAAACCCTCAGAATAGAC 177782 | | | | || || ||| || |||||| || |||| | | |||||||| ||| || Sbjct 5352611 AGTCTCCCGTCCTCGGAGAGGATGAAGCTGTCCCAGGACAACACCACCCTCAGCATAAAC 5352552 Query 177783 CCGGTC--GAGAGAGGAT-TTGGGACGACATCACTGTGAGGTCTCCAACCTCCTCAATGT 177839 || ||| |||||||||| ||||| | ||| |||||||||| |||||| ||| | Sbjct 5352551 CCTGTCAAGAGAGAGGATGCTGGGAAGTATTCA-TGTGAGGTCTTCAACCTAATCAGTAA 5352493 Query 177840 AAACCAAA 177847 ||||||| Sbjct 5352492 GAACCAAA 5352485 >seq4638 Length=1936607 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237 || ||||| || || | || |||||||| |||||||||||||| || || | |||| Sbjct 15867 CCCTCATGCTGCACATGGCACGTGTATCTCTGCTCTTCTCCAGAAGACACCACCACAGCT 15926 Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297 |||| || || | || |||||||| |||| | || || | |||| || || ||| Sbjct 15927 CCCCACTTCTGGTAGGTTCCATCTCCTCCTGGCCTGGTCTCCACAAGCTCCGTGTCCTGA 15986 Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357 |||| || || || || || | ||| || | | | || || || || || || |||| Sbjct 15987 GTTTGGTCCTCCCCATCCCGCTGCCAGGTCAGTGTGATCTCCGCAGGGTAGAAGCCCAGG 16046 Query 14358 GCCCAGCACC 14367 |||||||||| Sbjct 16047 GCCCAGCACC 16056 >seq4649 Length=3067355 Score = 82.4 bits (90), Expect = 1e-10 Identities = 132/190 (69%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 14178 CCTTCATGTTGAACGTCACATGTGTATCTAGTCTCTTCTCCAGAAGGGACGACGATAGCT 14237 || ||||| || || | ||| |||||||| ||| ||||||||||| || || | ||| Sbjct 162552 CCCTCATGCTGCACATGACAGGTGTATCTCTGCTCCTCTCCAGAAGGCACCACCACAGCC 162493 Query 14238 ACCCATTTTTGAAACGTCCCATCTCCAGCTGGACGTGTATCTATCTGCTCTGTATCTTGA 14297 |||| || || || || ||||| || | || | || || | |||| || || ||| Sbjct 162492 GCCCACTTCTGGAAGGTTCCATCCCCTGTAGGCCTGGTCTCCACGAGCTCCGTGTCCTGA 162433 Query 14298 CTTTGATCTTCTCCGTCTCGATACCACGTAATTTTTATATCAGCCGGATAAAAACCCAAA 14357 |||| || ||||| || || | ||| || | | | || | || || || | |||| Sbjct 162432 GTTTGTTCCTCTCCATCCCGCTGCCAGGTCAGTGTGATCCCCGCAGGGTAGTAGCCCAGG 162373 Query 14358 GCCCAGCACC 14367 |||||||||| Sbjct 162372 GCCCAGCACC 162363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629179966091040