Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq3971 239 5e-58 seq5093 159 4e-34 seq2336 111 2e-19 seq7904 82.4 9e-11 >seq3971 Length=4903791 Score = 239 bits (264), Expect = 5e-58 Identities = 336/471 (71%), Gaps = 3/471 (1%) Strand=Plus/Plus Query 37163 TTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATT 37222 ||| |||| | || ||||||||||| |||||||| |||||||| || || | |||||| Sbjct 744631 TTTGAACATCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATT 744690 Query 37223 AGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGA 37282 ||||| || | || ||||| | |||| ||| || | ||| ||||| | ||||||| | Sbjct 744691 GGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATA 744750 Query 37283 TCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGA 37342 |||||||||| | ||||| |||| ||||| |||||| |||| ||| | || | Sbjct 744751 ACCAGAAAAGA---TGCCTTCTGCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGC 744807 Query 37343 ACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGT 37402 | || |||||| | | |||||||||||| || ||||| || || Sbjct 744808 TTCTTTGTCCCCAATCCAGTGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGT 744867 Query 37403 TTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAG 37462 |||||| || || | |||||| | |||||| |||| |||| ||||| ||||| | Sbjct 744868 TTCAATGGCATTGAGGAGAAATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATACG 744927 Query 37463 TAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCT 37522 ||||||||||||||||| || || ||||| || || || || || ||| | ||||| | Sbjct 744928 GAAACTATACATTTCAGAATGTATGTTTTCTATGGCAATTTGGAAGCCACAGAAACAGCG 744987 Query 37523 AGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCC 37582 ||||| | | ||||| || | ||| | || | ||||||||||| ||||| || Sbjct 744988 GGCTTCTGTCATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCC 745047 Query 37583 ATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATC 37633 |||||| |||||||||||| | |||| || |||||||| ||| || || Sbjct 745048 ATCACTTGCTGCAAAGAAAACCAGAATATGAGATATAAAATCTCTCTCCTC 745098 >seq5093 Length=2087638 Score = 159 bits (176), Expect = 4e-34 Identities = 319/463 (69%), Gaps = 16/463 (3%) Strand=Plus/Plus Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAAT 37235 || ||||| | ||| |||||||| ||||| || || || | |||||| ||||| || | Sbjct 528962 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 529021 Query 37236 CCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAA 37295 || ||||| | |||| ||| || | ||| |||| ||||||||| ||||||||| | Sbjct 529022 CCAGGCATCAGTCCTCGTTTCTTGAGCCAGGATATCAGTGCAAAAGAACCAGAAAAGCAG 529081 Query 37296 ATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAAC---TATAATCA 37352 | | ||| || ||||| ||| ||| |||| || ||| ||| | | || Sbjct 529082 GTGCTTTCT-CTAGGGCAAACGCTGCAACACGTTCTCCATGAGT--AACGTCTTTGTTCC 529138 Query 37353 GAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCT 37412 || |||| | |||| ||||||| || ||||| || |||||||||| || Sbjct 529139 CAA-TCCAATACAAGACCCAAACTGCCTTCTTCTTGACACAGGCA-TTGTTTCAATGGCA 529196 Query 37413 TTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATAC 37472 || |||||||| | ||| || |||| | || | || ||||| || | ||||| Sbjct 529197 TTGAAGAGAAACTCCCTTTGTT----ATCTTTAATGT--GTGTCAATAAGGAGACTATTT 529250 Query 37473 ATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGAT 37532 || |||| || || ||||| ||||| || || || ||||| || || | ||| | | Sbjct 529251 ATGTCAGCATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTG-T 529309 Query 37533 AAT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGC 37591 ||| |||| || | || ||| | | |||||||||| ||||||||||||| || Sbjct 529310 AATCTGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGC 529369 Query 37592 TGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCA 37634 |||||||||||| |||| | | |||||||| |||||| ||| Sbjct 529370 TGCAAAGAAAGCCAGAATACAGGATATAAAATATCTTTCCTCA 529412 >seq2336 Length=9258750 Score = 111 bits (122), Expect = 2e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| || || | |||||| ||||| || | ||||||||| | |||||| || | Sbjct 5792329 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 5792270 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||| ||||| || ||||||||||| || |||||||| ||||| || || ||||| | Sbjct 5792269 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 5792210 Query 37318 CTAC 37321 | || Sbjct 5792209 CCAC 5792206 >seq7904 Length=13651311 Score = 82.4 bits (90), Expect = 9e-11 Identities = 76/94 (81%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | ||||| || || |||| |||| || || || || |||||||||| Sbjct 3485491 CATCACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTTCCTT 3485549 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | ||||| ||||| |||||||| |||||||| || Sbjct 3485550 CCAGTGAAATATTCTCCATAAAGTCAAATGGGTT 3485583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592219630428960