Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201
5-03-12] 13,124 sequences; 2,970,124,662 total letters
Query= NC_016924.1
Length=185139
Score E
Sequences producing significant alignments: (Bits) Value
seq3971 239 5e-58
seq5093 159 4e-34
seq2336 111 2e-19
seq7904 82.4 9e-11
>seq3971
Length=4903791
Score = 239 bits (264), Expect = 5e-58
Identities = 336/471 (71%), Gaps = 3/471 (1%)
Strand=Plus/Plus
Query 37163 TTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATT 37222
||| |||| | || ||||||||||| |||||||| |||||||| || || | ||||||
Sbjct 744631 TTTGAACATCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATT 744690
Query 37223 AGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGA 37282
||||| || | || ||||| | |||| ||| || | ||| ||||| | ||||||| |
Sbjct 744691 GGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATA 744750
Query 37283 TCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGA 37342
|||||||||| | ||||| |||| ||||| |||||| |||| ||| | || |
Sbjct 744751 ACCAGAAAAGA---TGCCTTCTGCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGC 744807
Query 37343 ACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGT 37402
| || |||||| | | |||||||||||| || ||||| || ||
Sbjct 744808 TTCTTTGTCCCCAATCCAGTGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGT 744867
Query 37403 TTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAG 37462
|||||| || || | |||||| | |||||| |||| |||| ||||| ||||| |
Sbjct 744868 TTCAATGGCATTGAGGAGAAATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATACG 744927
Query 37463 TAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCT 37522
||||||||||||||||| || || ||||| || || || || || ||| | ||||| |
Sbjct 744928 GAAACTATACATTTCAGAATGTATGTTTTCTATGGCAATTTGGAAGCCACAGAAACAGCG 744987
Query 37523 AGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCC 37582
||||| | | ||||| || | ||| | || | ||||||||||| ||||| ||
Sbjct 744988 GGCTTCTGTCATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCC 745047
Query 37583 ATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATC 37633
|||||| |||||||||||| | |||| || |||||||| ||| || ||
Sbjct 745048 ATCACTTGCTGCAAAGAAAACCAGAATATGAGATATAAAATCTCTCTCCTC 745098
>seq5093
Length=2087638
Score = 159 bits (176), Expect = 4e-34
Identities = 319/463 (69%), Gaps = 16/463 (3%)
Strand=Plus/Plus
Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAAT 37235
|| ||||| | ||| |||||||| ||||| || || || | |||||| ||||| || |
Sbjct 528962 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 529021
Query 37236 CCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAA 37295
|| ||||| | |||| ||| || | ||| |||| ||||||||| ||||||||| |
Sbjct 529022 CCAGGCATCAGTCCTCGTTTCTTGAGCCAGGATATCAGTGCAAAAGAACCAGAAAAGCAG 529081
Query 37296 ATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAAC---TATAATCA 37352
| | ||| || ||||| ||| ||| |||| || ||| ||| | | ||
Sbjct 529082 GTGCTTTCT-CTAGGGCAAACGCTGCAACACGTTCTCCATGAGT--AACGTCTTTGTTCC 529138
Query 37353 GAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCT 37412
|| |||| | |||| ||||||| || ||||| || |||||||||| ||
Sbjct 529139 CAA-TCCAATACAAGACCCAAACTGCCTTCTTCTTGACACAGGCA-TTGTTTCAATGGCA 529196
Query 37413 TTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATAC 37472
|| |||||||| | ||| || |||| | || | || ||||| || | |||||
Sbjct 529197 TTGAAGAGAAACTCCCTTTGTT----ATCTTTAATGT--GTGTCAATAAGGAGACTATTT 529250
Query 37473 ATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGAT 37532
|| |||| || || ||||| ||||| || || || ||||| || || | ||| | |
Sbjct 529251 ATGTCAGCATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTG-T 529309
Query 37533 AAT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGC 37591
||| |||| || | || ||| | | |||||||||| ||||||||||||| ||
Sbjct 529310 AATCTGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGC 529369
Query 37592 TGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCA 37634
|||||||||||| |||| | | |||||||| |||||| |||
Sbjct 529370 TGCAAAGAAAGCCAGAATACAGGATATAAAATATCTTTCCTCA 529412
>seq2336
Length=9258750
Score = 111 bits (122), Expect = 2e-19
Identities = 99/124 (80%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257
|||||||||| || || | |||||| ||||| || | ||||||||| | |||||| || |
Sbjct 5792329 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 5792270
Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317
| | ||| ||||| || ||||||||||| || |||||||| ||||| || || ||||| |
Sbjct 5792269 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 5792210
Query 37318 CTAC 37321
| ||
Sbjct 5792209 CCAC 5792206
>seq7904
Length=13651311
Score = 82.4 bits (90), Expect = 9e-11
Identities = 76/94 (81%), Gaps = 2/94 (2%)
Strand=Plus/Plus
Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930
||| |||||||| | ||||| || || |||| |||| || || || || ||||||||||
Sbjct 3485491 CATCACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTTCCTT 3485549
Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964
| ||||| ||||| |||||||| |||||||| ||
Sbjct 3485550 CCAGTGAAATATTCTCCATAAAGTCAAATGGGTT 3485583
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 592219630428960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |