Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq6472 172 4e-38 seq7015 134 1e-26 seq8681 118 9e-22 seq3771 118 9e-22 seq4682 104 2e-17 seq10126 102 7e-17 seq5171 95.1 1e-14 seq3505 82.4 6e-11 >seq6472 Length=2227648 Score = 172 bits (190), Expect = 4e-38 Identities = 220/298 (74%), Gaps = 4/298 (1%) Strand=Plus/Minus Query 29683 GGATGAGGGTCGTAACCCTCCAGGGAGAAA-TCCTCTGCCTTAAAGTCGTCCAGGTTCTC 29741 ||||| || | ||| |||| || |||| || || || || ||||| || | ||||| Sbjct 2220102 GGATGCGGATTGTA-CCCTTCAATCTGAAAGTCTTCAGCTTTGAAGTCATCAATTTTCTC 2220044 Query 29742 CACCCTCCTGTTTATCCTCAG-TGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCT 29800 || | | ||| | || | ||||||||| |||||| || | || |||||| | | Sbjct 2220043 AACTTTTCGAAGAATCTTGAGCTTTGGGAAAGG-TCTGGGTTCTCGCTGAAGCTGAATTT 2219985 Query 29801 TCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTC 29860 |||| || || | ||||| |||||| | || || ||||||| ||||| ||||| || | Sbjct 2219984 TCAGTGGCTCGATGTGATTCAGGTAAATATGTGCATCTCCCAAAGTGTGTACAAAGTCAC 2219925 Query 29861 CCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGT 29920 | || | || || |||| ||| || |||||||||||||| || | |||||||||||||| Sbjct 2219924 CTGGCTTCAGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGT 2219865 Query 29921 TAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTC 29978 | || || || || || |||||||| ||||| |||||||| ||||| || || ||||| Sbjct 2219864 TGAAAGGCACGCCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTC 2219807 >seq7015 Length=9623085 Score = 134 bits (148), Expect = 1e-26 Identities = 128/164 (78%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| || |||||||||||||| || | ||||||||||||||| || || Sbjct 2250479 AGGCCCGTGATGTGCGCAATCATGTACGTGAGTAGGGCGTAGCTGGCGATGTTGAAAGGC 2250420 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || |||||||| ||||| |||||||| ||||| || || ||||| | || | Sbjct 2250419 ACGCCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 2250360 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 || || ||||| || | || |||||| ||||| || ||||| || Sbjct 2250359 ACATAGAACTGGCAGAGGGCGTGGCATGGAGGCAGTGCCATCAG 2250316 Score = 109 bits (120), Expect = 4e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| || || || ||||||||||||||||| || || || || |||| ||| Sbjct 2246329 CATATCTCTGTATTCGGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGACCCAAGTC 2246270 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 || ||||| ||| ||| ||| ||||||||||||||| ||| || ||||| || Sbjct 2246269 CCCTTCTTCTCTGGTGGAGAACCCCAGGCTGTCCAAAAAGTCTCGGGATCCATTGGCATC 2246210 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 |||||| || || ||||| || ||||| || | |||||||| || Sbjct 2246209 CCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCATTTGTGGATCC 2246162 >seq8681 Length=27971852 Score = 118 bits (130), Expect = 9e-22 Identities = 185/260 (71%), Gaps = 10/260 (4%) Strand=Plus/Minus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || || || |||||||| |||| || || || | | Sbjct 24368782 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTT 24368723 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||||| |||||| || || ||||||||||||||||| ||||||| |||| || || Sbjct 24368722 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAAGTCTTCTTACCCATAATCATCAGATT 24368663 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 112258 ||| || ||| |||||||| || | |||| | ||| | || | | | || || || | Sbjct 24368662 CTGTTTACCTTCTACTGAAGAGGTTGTGGTC-ATTCTCTGGAAATATCTGAATTCATTCC 24368604 Query 112259 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 112317 || || |||| ||||| || ||||| || |||||||||||| ||||| || Sbjct 24368603 TGAG------CGGTGGCCAGGGCAGGTCCCCGTTCTTGCCGATGCCCATGTTCTGG-GAC 24368551 Query 112318 ACGGCCACGATACCGTTCAG 112337 || || ||||| | ||| || Sbjct 24368550 ACAGCGACGATGCAGTTTAG 24368531 >seq3771 Length=10901971 Score = 118 bits (130), Expect = 9e-22 Identities = 185/260 (71%), Gaps = 10/260 (4%) Strand=Plus/Minus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || || || |||||||| |||| || || || | | Sbjct 4179299 ATGAGCTCCTTCTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTT 4179240 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||||| |||||| || || ||||||||||||||||| ||||||| ||||||| || Sbjct 4179239 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAAGTCTTCTTACCCATAATCACCAGATT 4179180 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 112258 ||| || ||| |||||||| || | |||| | ||| | || | | | || || || | Sbjct 4179179 CTGTTTACCTTCTACTGAAGAGGTTGTGGTC-ATTCTCTGGAAATATCTGAATTCATTCC 4179121 Query 112259 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 112317 || || |||| ||||| || || || || |||||||||||| ||||| || Sbjct 4179120 TGAG------CGGCGGCCAGGGCAGGTCCCCATTCTTGCCGATGCCCATGTTCTGG-GAC 4179068 Query 112318 ACGGCCACGATACCGTTCAG 112337 || || ||||| | ||| || Sbjct 4179067 ACAGCGACGATGCAGTTTAG 4179048 >seq4682 Length=14522853 Score = 104 bits (114), Expect = 2e-17 Identities = 182/260 (70%), Gaps = 10/260 (4%) Strand=Plus/Plus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || || | |||||||| |||| || || || | | Sbjct 6466498 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTATCTGCTGAGAACTAAATTAATTCTACCCTT 6466557 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||||| |||||| || | ||||||||||||||||| |||||| ||||||| || Sbjct 6466558 TAAAGGTCGATTCTTCTCAGAAATGGAGAACCAAGTCTTCTTACCCAAAATCACCAGATT 6466617 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTCGA-AAGTGTTTAAAATCTTTGC 112258 ||| || ||| |||||||| || | |||| | ||| | || | | | || || || | Sbjct 6466618 CTGTTTACCTTCTACTGAAGAGGTTGTGGTC-ATTCTCTAGAAATATCTGAATTCATTCC 6466676 Query 112259 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 112317 || || |||| ||||| || | ||| || |||||||||||| ||||| || Sbjct 6466677 TGAG------CGGTGGCCAGGGCAGGTCCCTGTTCTTGCCGATGCCCATGTTCTGG-GAC 6466729 Query 112318 ACGGCCACGATACCGTTCAG 112337 || || ||||| | ||| || Sbjct 6466730 ACAGCGACGATGCAGTTTAG 6466749 >seq10126 Length=12978727 Score = 102 bits (112), Expect = 7e-17 Identities = 180/259 (69%), Gaps = 10/259 (4%) Strand=Plus/Plus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || || || |||||||| |||| || || || || | Sbjct 7685026 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTATCCTT 7685085 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||||| |||||| || || ||||||||||| |||| |||||||| ||||||| | Sbjct 7685086 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTACCTACCCATAATCACCAGAT- 7685144 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 112258 || || ||| |||||||| | | |||| | ||| | || | | || || || | Sbjct 7685145 -TGTTTACCTTCTACTGAAGAAGGTGTGGTC-ATTCTCTGGAAATACCTGAATTCATTCC 7685202 Query 112259 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACA 112318 || ||| |||| ||||| || || || || ||||||||||||| | | ||| Sbjct 7685203 TGAG------CGGAGGCCAGGGCAGGTCCCCATTCTTGCCGATGCCCATGTTTTGGGACA 7685256 Query 112319 CGGCCACGATACCGTTCAG 112337 | || ||||| | ||| || Sbjct 7685257 CAGCGACGATGCAGTTTAG 7685275 >seq5171 Length=4515498 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || || || |||||||| |||| || || || | | Sbjct 3346892 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTT 3346833 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | |||| |||||| || || ||||||||||||||||| ||| ||| ||||||| || Sbjct 3346832 TAAAGGTTGATTCTTCTCAGGAATGGAGAACCAAGTCTTCTTACTCATAATCACCAGATT 3346773 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCA 112231 ||| || ||| |||||||| || | ||||| Sbjct 3346772 CTGTTTACCTTCTACTGAAGAGGTTGTGGTCA 3346741 >seq3505 Length=8742144 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || || || |||||||| |||| || || || | | | ||||| |||||| || || Sbjct 2948824 TTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTTTAAAGGTCGATTCTTCTCAGGA 2948883 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||||||||| ||||||| ||||||| ||||| || ||| Sbjct 2948884 ATGGAGAACCAAGTCTTCTTACCCATAATCACCAGATTCTGTTTACCT 2948931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408552242125652