Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201
5-03-12] 13,124 sequences; 2,970,124,662 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq7038 109 4e-19
seq2558 109 4e-19
seq5126 96.9 3e-15
seq11570 91.5 1e-13
seq10903 91.5 1e-13
seq6583 82.4 6e-11
>seq7038
Length=1003649
Score = 109 bits (120), Expect = 4e-19
Identities = 146/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| ||||| || || || || || ||||| || | | ||| | | |||| |||| |||
Sbjct 394442 TGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGC 394501
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| |||||||| || | | ||| || ||||| ||||||||||| ||||| || |||||
Sbjct 394502 TTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGATTTTG 394561
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| ||| |||| | |||||| | ||||| || || |||| || ||||||||
Sbjct 394562 GCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTC 394621
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
| || || || || ||||||||
Sbjct 394622 AGGGTCTTCACGAAGATCTGCAT 394644
>seq2558
Length=10987700
Score = 109 bits (120), Expect = 4e-19
Identities = 146/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 101271 GGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTAC 101330
|||| || ||||| || || ||||| || | || ||| | |||| |||| || || |
Sbjct 486455 GGGTGGACTCTTTGTGGATGTTGTAGTCTGAGAGAGTGTGGCCATCTTCCAGCTGTTTGC 486396
Query 101331 CTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTT 101390
| |||||||||| |||||| || || || || || || || || ||||||||||| ||
Sbjct 486395 CGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGAATTTTGGCTT 486336
Query 101391 TTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAG 101450
| || | || | ||||||| | || || ||||| |||| |||||||| || | |
Sbjct 486335 TGACGTTCTCAATAGTGTCACTGGGCTCGACCTCAAGGGTGATGGTTTTGCCCGTGAGGG 486276
Query 101451 TTTTTACAAATATCTGCATGGTT 101473
| ||| ||| ||||||||| ||
Sbjct 486275 TCTTTGTAAAGATCTGCATGTTT 486253
>seq5126
Length=8658521
Score = 96.9 bits (106), Expect = 3e-15
Identities = 145/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| ||||| || || || || || ||||| || | | || | |||| |||| |||
Sbjct 3005823 TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGC 3005764
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| || ||||| |||| | ||| || ||||| ||||||||||| |||||||| || |||
Sbjct 3005763 TTTCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTATCTTGGATCTTT 3005704
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| ||| | || | |||||| | || || || || |||| || ||||| ||
Sbjct 3005703 GCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTC 3005644
Query 101447 AAAGTTTTTACAAATATCTGCATGGT 101472
| ||| || || || |||||||| ||
Sbjct 3005643 AGAGTCTTCACGAAGATCTGCATTGT 3005618
>seq11570
Length=13276302
Score = 91.5 bits (100), Expect = 1e-13
Identities = 139/198 (70%), Gaps = 0/198 (0%)
Strand=Plus/Plus
Query 101272 GGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACC 101331
||| || | |||||| || ||||| || | || ||| | | |||| |||| ||||| ||
Sbjct 889460 GGTGGACTGTTTTTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCCTCCAGCTGCTTGCC 889519
Query 101332 TGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTT 101391
|||||||||| | |||| || || || || || || || || ||||||||||| |||
Sbjct 889520 AGCAAATATCAGATGCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGAATTTTGGCTTT 889579
Query 101392 TACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGT 101451
| | | || |||| | | || || ||||| |||| || ||||| || | ||
Sbjct 889580 GAAATTCTCAGTGGTGTAACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGT 889639
Query 101452 TTTTACAAATATCTGCAT 101469
|| ||||| | ||||||
Sbjct 889640 CTTCACAAAGAGCTGCAT 889657
>seq10903
Length=19515036
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/212 (69%), Gaps = 11/212 (5%)
Strand=Plus/Plus
Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317
|| || | |||||| ||||| || ||||| || ||||| || | ||||
Sbjct 16763658 AACACAAGATGAAGCGTAGACTCCTTTTGAATGTTGTAGTCAGA-----------CATCT 16763706
Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377
||||||||||| || ||||| |||| | || ||||| || ||||| ||||| |||||
Sbjct 16763707 TCCAATTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCC 16763766
Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437
|| || || |||||| ||||| || | | | ||| || ||||| |||| ||
Sbjct 16763767 TGGATATTGGCCTTTACAGTTTCTGTTGTATTCAAGGGTTCAACCTCAAGGGTGATGGTC 16763826
Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || || | ||||| || || ||||||||
Sbjct 16763827 TTCCCTGTAAGGGTTTTCACGAAAATCTGCAT 16763858
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/212 (69%), Gaps = 11/212 (5%)
Strand=Plus/Plus
Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317
|| || | |||||| ||||| || ||||| || ||||| || | ||||
Sbjct 16768579 AACACAAGATGAAGCGTAGACTCCTTTTGAATGTTGTAGTCAGA-----------CATCT 16768627
Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377
||||||||||| || ||||| |||| | || ||||| || ||||| ||||| |||||
Sbjct 16768628 TCCAATTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCC 16768687
Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437
|| || || |||||| ||||| || | | | ||| || ||||| |||| ||
Sbjct 16768688 TGGATATTGGCCTTTACAGTTTCTGTTGTATTCAAGGGTTCAACCTCAAGGGTGATGGTC 16768747
Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469
|| || || | ||||| || || ||||||||
Sbjct 16768748 TTCCCTGTAAGGGTTTTCACGAAAATCTGCAT 16768779
>seq6583
Length=2948085
Score = 82.4 bits (90), Expect = 6e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| ||||| || ||||| || | ||| || | || ||||| | |||| ||| ||
Sbjct 72636 TGCAGGGTGGACTCTTTCCAGATGTCGTAGTCTGAGAGAGTTCGGCCATCCCCCAGCTGT 72695
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| || |||| ||||| | |||| || || || || || || || || |||||||||||
Sbjct 72696 TTGCCGGCAAGTATCAGATGCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGAATTTTG 72755
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
||| ||| || |||||| | | || |||||||||| || ||||| ||
Sbjct 72756 GCTTTGACATCCTCATTGGTGTCACTGGGCTTGACCTCAAGAGTGATGGTCTTGCCCGTA 72815
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
| || || ||||| ||||||||
Sbjct 72816 AGGGTCTTCACAAAGATCTGCAT 72838
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396215015765268
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |