Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq7038 109 4e-19 seq2558 109 4e-19 seq5126 96.9 3e-15 seq11570 91.5 1e-13 seq10903 91.5 1e-13 seq6583 82.4 6e-11 >seq7038 Length=1003649 Score = 109 bits (120), Expect = 4e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || || || || || ||||| || | | ||| | | |||| |||| ||| Sbjct 394442 TGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGC 394501 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || |||||||| || | | ||| || ||||| ||||||||||| ||||| || ||||| Sbjct 394502 TTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGATTTTG 394561 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| |||| | |||||| | ||||| || || |||| || |||||||| Sbjct 394562 GCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTC 394621 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || || || |||||||| Sbjct 394622 AGGGTCTTCACGAAGATCTGCAT 394644 >seq2558 Length=10987700 Score = 109 bits (120), Expect = 4e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 101271 GGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTAC 101330 |||| || ||||| || || ||||| || | || ||| | |||| |||| || || | Sbjct 486455 GGGTGGACTCTTTGTGGATGTTGTAGTCTGAGAGAGTGTGGCCATCTTCCAGCTGTTTGC 486396 Query 101331 CTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTT 101390 | |||||||||| |||||| || || || || || || || || ||||||||||| || Sbjct 486395 CGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGAATTTTGGCTT 486336 Query 101391 TTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAG 101450 | || | || | ||||||| | || || ||||| |||| |||||||| || | | Sbjct 486335 TGACGTTCTCAATAGTGTCACTGGGCTCGACCTCAAGGGTGATGGTTTTGCCCGTGAGGG 486276 Query 101451 TTTTTACAAATATCTGCATGGTT 101473 | ||| ||| ||||||||| || Sbjct 486275 TCTTTGTAAAGATCTGCATGTTT 486253 >seq5126 Length=8658521 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || || || || || ||||| || | | || | |||| |||| ||| Sbjct 3005823 TGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCATCTTCCAGCTGC 3005764 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || ||||| |||| | ||| || ||||| ||||||||||| |||||||| || ||| Sbjct 3005763 TTTCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTATCTTGGATCTTT 3005704 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | |||||| | || || || || |||| || ||||| || Sbjct 3005703 GCCTTGACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTC 3005644 Query 101447 AAAGTTTTTACAAATATCTGCATGGT 101472 | ||| || || || |||||||| || Sbjct 3005643 AGAGTCTTCACGAAGATCTGCATTGT 3005618 >seq11570 Length=13276302 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 101272 GGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACC 101331 ||| || | |||||| || ||||| || | || ||| | | |||| |||| ||||| || Sbjct 889460 GGTGGACTGTTTTTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCCTCCAGCTGCTTGCC 889519 Query 101332 TGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTT 101391 |||||||||| | |||| || || || || || || || || ||||||||||| ||| Sbjct 889520 AGCAAATATCAGATGCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGAATTTTGGCTTT 889579 Query 101392 TACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGT 101451 | | | || |||| | | || || ||||| |||| || ||||| || | || Sbjct 889580 GAAATTCTCAGTGGTGTAACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGT 889639 Query 101452 TTTTACAAATATCTGCAT 101469 || ||||| | |||||| Sbjct 889640 CTTCACAAAGAGCTGCAT 889657 >seq10903 Length=19515036 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/212 (69%), Gaps = 11/212 (5%) Strand=Plus/Plus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || | |||||| ||||| || ||||| || ||||| || | |||| Sbjct 16763658 AACACAAGATGAAGCGTAGACTCCTTTTGAATGTTGTAGTCAGA-----------CATCT 16763706 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 ||||||||||| || ||||| |||| | || ||||| || ||||| ||||| ||||| Sbjct 16763707 TCCAATTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCC 16763766 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 || || || |||||| ||||| || | | | ||| || ||||| |||| || Sbjct 16763767 TGGATATTGGCCTTTACAGTTTCTGTTGTATTCAAGGGTTCAACCTCAAGGGTGATGGTC 16763826 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || | ||||| || || |||||||| Sbjct 16763827 TTCCCTGTAAGGGTTTTCACGAAAATCTGCAT 16763858 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/212 (69%), Gaps = 11/212 (5%) Strand=Plus/Plus Query 101258 AAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCG 101317 || || | |||||| ||||| || ||||| || ||||| || | |||| Sbjct 16768579 AACACAAGATGAAGCGTAGACTCCTTTTGAATGTTGTAGTCAGA-----------CATCT 16768627 Query 101318 TCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCT 101377 ||||||||||| || ||||| |||| | || ||||| || ||||| ||||| ||||| Sbjct 16768628 TCCAATTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCC 16768687 Query 101378 TGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTT 101437 || || || |||||| ||||| || | | | ||| || ||||| |||| || Sbjct 16768688 TGGATATTGGCCTTTACAGTTTCTGTTGTATTCAAGGGTTCAACCTCAAGGGTGATGGTC 16768747 Query 101438 TTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || | ||||| || || |||||||| Sbjct 16768748 TTCCCTGTAAGGGTTTTCACGAAAATCTGCAT 16768779 >seq6583 Length=2948085 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || ||||| || | ||| || | || ||||| | |||| ||| || Sbjct 72636 TGCAGGGTGGACTCTTTCCAGATGTCGTAGTCTGAGAGAGTTCGGCCATCCCCCAGCTGT 72695 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || |||| ||||| | |||| || || || || || || || || ||||||||||| Sbjct 72696 TTGCCGGCAAGTATCAGATGCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGAATTTTG 72755 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| ||| || |||||| | | || |||||||||| || ||||| || Sbjct 72756 GCTTTGACATCCTCATTGGTGTCACTGGGCTTGACCTCAAGAGTGATGGTCTTGCCCGTA 72815 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| |||||||| Sbjct 72816 AGGGTCTTCACAAAGATCTGCAT 72838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396215015765268