Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq4805 87.8 1e-12 seq12126 82.4 6e-11 seq6459 82.4 6e-11 seq2558 82.4 6e-11 >seq4805 Length=5228064 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||| | ||| || || ||| |||||||||||||| ||||| | | | || | || Sbjct 4473625 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 4473566 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| ||||| || ||||| ||||||| || ||||| | |||| || ||||| || Sbjct 4473565 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 4473506 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||||| |||||| | | | || || | || ||||| | || || || Sbjct 4473505 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 4473446 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| | ||||| || ||||||||||| Sbjct 4473445 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 4473413 >seq12126 Length=7615049 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||| | ||| || || ||| |||||||||||||| ||||| | | | || | || Sbjct 7457960 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 7457901 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| ||||| || ||||| |||| || || ||||| | |||| || ||||| || Sbjct 7457900 TTCCAGTTGCTTGCCAGCAAAGATCAATCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 7457841 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||||| |||||| | | | || || | || ||||| | || || || Sbjct 7457840 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 7457781 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| | ||||| || ||||||||||| Sbjct 7457780 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 7457748 >seq6459 Length=16685579 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||| | ||| || || ||| |||||||||||||| ||||| | | | || | || Sbjct 968945 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 968886 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| ||||| || ||||| |||| || || ||||| | |||| || ||||| || Sbjct 968885 TTCCAGTTGCTTGCCAGCAAAGATCAATCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 968826 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||||| |||||| | | | || || | || ||||| | || || || Sbjct 968825 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 968766 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| | ||||| || ||||||||||| Sbjct 968765 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 968733 >seq2558 Length=10987700 Score = 82.4 bits (90), Expect = 6e-11 Identities = 150/216 (69%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 48553 GCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGT 48612 ||||||||| || | ||| |||||| || || ||||| || || ||| | | | | Sbjct 486470 GCAACACCAGGTGCGGGGTGGACTCTTTGTGGATGTTGTAGTCTGAGAGAGTGTGGCCAT 486411 Query 48613 CGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGT 48672 | |||| ||| || |||||||||||||| ||||| || || | || | |||||||||| Sbjct 486410 CTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGT 486351 Query 48673 CGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGAC--GCCTCCACCTCCACCGTAAT 48730 | ||| ||| | ||| | | || | | | | || | ||| ||||| | || || Sbjct 486350 CTTGAAT-TTTGGCTTTGACGTTCTCA-ATAGTGTCACTGGGCTCGACCTCAAGGGTGAT 486293 Query 48731 CGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| ||||| | || ||| ||| |||||||| Sbjct 486292 GGTTTTGCCCGTGAGGGTCTTTGTAAAGATCTGCAT 486257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380876669507052