Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq6348 197 3e-45 seq3971 102 2e-16 seq225 89.7 1e-12 seq6727 87.8 3e-12 >seq6348 Length=5095545 Score = 197 bits (218), Expect = 3e-45 Identities = 192/245 (78%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 241385 AGCTGCTGACAGCCTTGGC--ACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCT 241442 ||| |||||||||| | || ||||| | || ||||| ||||||||| |||||||||| Sbjct 374888 AGCAGCTGACAGCCGTTGCTGACATGGGTCAT--GACCTTCTGTTTGAGCTGGGCCACCT 374945 Query 241443 GGTCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCA 241502 | ||||| || | | |||||| | ||||| |||||||| || | ||||||| ||||| Sbjct 374946 GCTCCCGGAGGAGGCCGGCGGTACTCGACAGCCCTGCGTTCTCGGCCTTGAGCGTCTTCA 375005 Query 241503 CTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCA 241562 | || |||||||| ||||||||||| ||||| || ||| ||||| |||||||| |||| Sbjct 375006 CCTTGTCCTCCAGGCGCGCGATGCGCTCCAGCTTCCGCTTCCGGCACTTGGTGGCCGCCA 375065 Query 241563 AGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCG 241622 |||||||| || | ||| || ||| | |||||||| || ||||| ||||||| ||| | Sbjct 375066 GCCGGTTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCTTGGTCTTCCATGTTGATGG 375125 Query 241623 GAGAC 241627 | ||| Sbjct 375126 GGGAC 375130 Score = 84.2 bits (92), Expect = 4e-11 Identities = 87/115 (76%), Gaps = 8/115 (7%) Strand=Plus/Plus Query 238926 TCTGTTTGAGTTGGGCCACCCGGTCCCGCAGAACGGACGCGGTATTGGACAGACCCGCGT 238985 |||||||||| ||||||||| | ||||| || | | |||||| | ||||| || |||| Sbjct 374925 TCTGTTTGAGCTGGGCCACCTGCTCCCGGAGGAGGCCGGCGGTACTCGACAGCCCTGCGT 374984 Query 238986 TATCAGACTTGAGCAT--------TCTCCTCCAGCCGCGCGATGCGTTCCAGCTT 239032 | || | ||||||| | | |||||||| ||||||||||| |||||||| Sbjct 374985 TCTCGGCCTTGAGCGTCTTCACCTTGTCCTCCAGGCGCGCGATGCGCTCCAGCTT 375039 >seq3971 Length=4903791 Score = 102 bits (112), Expect = 2e-16 Identities = 533/841 (63%), Gaps = 35/841 (4%) Strand=Plus/Plus Query 47846 TCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCCATGAAG 47905 |||| ||||| |||||||||||||| ||||| | | || || |||||||| ||| Sbjct 744369 TCCCTTACTCTCTTCTCAAAGAAGTTCGTCTTTCAGT-----GAAATATTCTCCATAAAG 744423 Query 47906 AGGAAGGGGTTGGGTGTGTTAT-ACACCCGTG-TCAGGCCCATCTGTTCCAGCAGGTGA- 47962 || ||||| | | | | | | || || | | |||| ||||||||| || Sbjct 744424 TCAAATGGGTTC--TCTACTCTGAAAACCTTGCTAAAACCCA---GTTCCAGCATGTCTG 744478 Query 47963 TCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGGACACG 48022 || || || |||| ||| ||| ||| || ||| ||||| || || | ||| Sbjct 744479 TCTGCCACAAACTCAATGCATTGCTTCATTAGAGTGCAATTCATCCCAATAGGCTTCACA 744538 Query 48023 GGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTA 48082 ||||| |||| ||||| || |||| |||||| | || || | | || | | Sbjct 744539 GGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTATTTCTCTT 744598 Query 48083 ACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCC 48142 || | ||| ||||||| |||||| ||| | | || ||| ||||| || Sbjct 744599 ACTCTCTCCTCCAGTGGTTTGTGTACCAGGTGTTTGA---ACATCAGGCAAGCAAAATCA 744655 Query 48143 CTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACC 48202 | ||| || || || || | ||| || || | ||||| || ||| |||||||| | Sbjct 744656 CAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGT 744715 Query 48203 CCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACT 48262 || | | ||||||||||| || | || ||| | |||| | |||||||| || || Sbjct 744716 CCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAG---AAAAGATGCCTTCTGCT 744772 Query 48263 GCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAG-GAAAG 48321 || || || | | | || || | | ||| | ||||| |||||| | ||| Sbjct 744773 GCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTGTCCCCAATCCAGTGCAAG 744832 Query 48322 CGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTCTT 48381 ||||| |||||||||||||||| || |||||||| || ||||| || ||| Sbjct 744833 -GCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAGGAG------ 744885 Query 48382 GCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCG-------TACATCTCAG 48434 | || | | | | | | | | | || || | | || ||||| |||| Sbjct 744886 AAATTCCCTTTCTTTGGGATCTTTTAT-GTAAGTGTCAATACGGAAACTATACATTTCAG 744944 Query 48435 AGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCA 48494 | || | || ||||| || || ||||| || |||| | ||| || || ||| | Sbjct 744945 AATGTATGTTTTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCATCTGAA 745004 Query 48495 CTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGA 48554 ||||| | |||| ||||| || || ||||| ||||| ||||| || ||||||| Sbjct 745005 CTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGA 745064 Query 48555 AGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCTGTA 48614 | | || | ||| | |||| | ||| | | | | || | | |||| | | Sbjct 745065 AAACCAGAATATGAGATATAAAATCTCTCTCCTCGGGCTTCAGGGATTCCCAGTGCCAAA 745124 Query 48615 CGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACA 48674 |||| ||| ||||||||| || || | ||||||||||| || || || || |||| Sbjct 745125 CGTCCTTGGACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACA 745184 Query 48675 T 48675 | Sbjct 745185 T 745185 >seq225 Length=9998049 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||||||||| ||||| | ||||| || | ||||| |||| ||| Sbjct 6973332 TTCACTTTTTCCTCCAGCCGGGCGATTCTCTCCAGCTTCCTTTTTCGGCACTTGGAGGCA 6973273 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | ||||||||||| || |||||| ||||||||| Sbjct 6973272 GCAATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTGATCCGCTCCTGGGACTCCATGTCA 6973213 Query 241619 ATCGGAGAC 241627 || || ||| Sbjct 6973212 ATGGGGGAC 6973204 >seq6727 Length=1359887 Score = 87.8 bits (96), Expect = 3e-12 Identities = 90/115 (78%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 |||||||||| || || |||||||| ||||||||| |||||| ||||||||||| ||| Sbjct 319394 GTGTACTCCACTATTTCTGTGCACAGATTGCTGCATTTGATGGTTCCCAGGTTCTGCTGG 319453 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCT 213641 ||| || || | || ||||| ||||||||||| || |||| || || ||| Sbjct 319454 -TTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATATACGGGGTGCCTGTTTCT 319507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931379982044160