Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq4871 311 1e-79 seq12903 188 8e-43 seq3002 118 1e-21 >seq4871 Length=5485048 Score = 311 bits (344), Expect = 1e-79 Identities = 664/987 (67%), Gaps = 15/987 (2%) Strand=Plus/Plus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 || ||| || |||| ||| |||| ||| || | |||||| || |||| || ||||| || Sbjct 1009835 CAAATGCTCATCCAAACACTGGATGGCAAAGAGGTCAACATCCACGTCAAACTTATTGGC 1009894 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 |||| ||||| ||| | || ||||||| || ||| || | || || | ||| || Sbjct 1009895 AAACAAGTGGTG---GTTGCGCAGCATCCAGTTCAAGTCACCAGCTCCAAAAATGCACAC 1009951 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 || || | ||| || || | ||| || |||||| | || || || | || ||||| || Sbjct 1009952 CGAGCGCACGTGGACCCCATCGCAGGGAGGGTACGGGGCACCCTTGGAAACATCACCCTC 1010011 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 |||| |||||||| ||||||||||| | || |||||||| || ||||| || | Sbjct 1010012 AAAGTATTGCCACTTGACAAACCTGGCAACTGCTTGCATGTCAGACAAATCGTACTTATG 1010071 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 | | || | || || || | || || | ||| | ||||||||| || | || Sbjct 1010072 GCTGGCAGAAAGTGAGCCCGGGACTTCAGGAATCCTCTGGATGGTGGCCCAGAGATACTC 1010131 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAG 160411 || |||||||| ||||| | | ||| ||||| |||| | || | | | | || Sbjct 1010132 ATCAGGGCTGTATGTGTCTTGCGCCCACTCCATAAACTTTTGGAGTTTTTCATTCTGTAG 1010191 Query 160412 AACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTAT 160471 || | || || || | || |||||||| || ||||| || || | ||| | Sbjct 1010192 TACATACCCCACATACTCCCTACTGACCACAAAGTAGGCACTGCCAGAAAAAAGAGGTGT 1010251 Query 160472 ---GGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAG 160528 | | ||| || | |||| | || ||||| | || | ||| || | | Sbjct 1010252 TTCGAGCGGAGGAAGCAT---TTTGACAGTCCCTGTGTTTGTCAGCTTTCCATTAATGAC 1010308 Query 160529 CGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACT 160588 | | | ||||| |||||||| | || || | |||||| | ||||| || || || Sbjct 1010309 CTCATACCGCTTTTTCCACCTTTCTTCTTTATGGGATGGCATCCTCTCCGTTTCCAGGCT 1010368 Query 160589 GTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAA 160648 ||| | || | | | ||||||| | |||| || |||||||| || || | ||||| Sbjct 1010369 GTTTTCTCCCATTAACAACTTCAGCTTCCTGACAATTTCTAGGTTGGTTTTAATAGGAAA 1010428 Query 160649 GTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCT 160708 || |||| || | ||||||| ||||||||| || || |||| | | |||||| | Sbjct 1010429 ATCCATACCACAAAGATTTATCAAGTACTTCCAGTTTGCACTCATTGCATAGAGGTCCTT 1010488 Query 160709 CATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTT 160768 |||||| |||| || ||||| || |||||||| || || || || || |||| | | Sbjct 1010489 CATGCAGTTAAGGTCAGCCTGAACCCGGCTCCACGATGCATAAACCACACTCTCCAATCG 1010548 Query 160769 ACTGGCCACAAAGACGTTATCGAAACACGACACGATTCC---CACCACCGCCAGAAAGAA 160825 |||||||||||||| ||| |||||| || |||| || ||| | || | | || | Sbjct 1010549 GCTGGCCACAAAGACATTACTGAAACAGGAAGCGATGCCTGTCACTGCAGCTAAATAGGA 1010608 Query 160826 CATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGC 160885 ||| || | ||| |||||| || | |||||| | ||||||||| |||||||| Sbjct 1010609 -ATC--CTCGGATTTTGTGTCCACATGAATGCAATAGAAATTCTGAGGCATATAGATGGC 1010665 Query 160886 CCTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGG 160945 ||| |||| ||| || | ||| || ||||| ||||| | ||| ||||| || ||||| || Sbjct 1010666 CCTCAGCAGCCTGTCAAGCATTTCAATCTTGTGATGAACCACTATAGAATATGCTATTGG 1010725 Query 160946 AAACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATA 161005 |||||| | ||| || ||| |||| | | || || || ||||||| ||| | Sbjct 1010726 AAACTCTGCCTCTTCTTTACTAAGGGGTTCTACAATATATTTGCGTCTCTTGATGAAAGA 1010785 Query 161006 ATCACAATCCCGCGTCATGTTGATATA 161032 | ||| || | |||||||| ||||| Sbjct 1010786 AGTACAGTCACTGGTCATGTTTATATA 1010812 >seq12903 Length=10971483 Score = 188 bits (208), Expect = 8e-43 Identities = 227/309 (73%), Gaps = 0/309 (0%) Strand=Plus/Minus Query 168155 AGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATGAA 168214 ||| | ||| | | |||| || ||||| || || || || || |||||||| |||||| | Sbjct 5622434 AGTGAGGCAGGCTGTTCCTGAGATCTTCCCAGAACCAAAAGTATTGAAGAGACACATGTA 5622375 Query 168215 GCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCCAA 168274 || ||||| ||||||| |||| ||||||| || || | ||||||||| |||| |||| Sbjct 5622374 ACACCCTTCATCCTCCAGGGTGATATTCCAGAAGGTGATGGTTGAGTTTTGGAGTCCCAG 5622315 Query 168275 CTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCGCT 168334 ||| || ||||| | || ||||| | ||| || | || || || ||||||||||| Sbjct 5622314 CTGGGTAATGTTTATCTTGTCCTTATAGGCAGGCTGGATCACCACTCCATGGTTCTCGCT 5622255 Query 168335 GAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGAAC 168394 ||||||| ||||||| || ||||| || || | |||||||| || || ||||| || Sbjct 5622254 GAAGGTGACCATGTTTTCTGGGCTTACAGCTTTCTTTTTCTGCCATGTCACAATCAGGAC 5622195 Query 168395 CTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTCGCTC 168454 || | | | ||||| || ||||| | ||||| ||||||| |||| | |||| || Sbjct 5622194 TTCCTGGGCATTTTGCAGAGAGCATCTTAAGGAAGCAGGAGTGTACAGCTGCTCTCTTTC 5622135 Query 168455 ATCTTGAGT 168463 ||| || || Sbjct 5622134 ATCCTGGGT 5622126 Score = 93.3 bits (102), Expect = 5e-14 Identities = 153/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 167883 GTTTGCCGTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTT 167942 ||||||| | ||| || || || |||| || || |||| ||| |||||||| || Sbjct 5624984 GTTTGCCTAAAGTCAGTCACGGTCCCCAGGTGCAGCACCTGGCAGATCACCTCC---TTC 5624928 Query 167943 CCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTG 168002 || || ||| |||| || ||||| || || | ||||| || ||| || |||||||| Sbjct 5624927 CCCACCTGATTCTTAGGGTCTTTGACCTGGAGGATGCTGGTAACAGACGTGGTTCCATTT 5624868 Query 168003 CGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATATT 168062 | || | | || || || || ||||||||||| | | ||||||||||| || Sbjct 5624867 GGGTGAGACAGAGTCACTGTACTATTTTCAATCCCTGACCGAGGGACCTTCCAGAAGATC 5624808 Query 168063 ACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102 | || || || || || || |||||||| || || |||| Sbjct 5624807 ATGGGGGCTGGGCGGGCAGTGGCAGAGCAAGTGATGTTTA 5624768 >seq3002 Length=11311314 Score = 118 bits (130), Expect = 1e-21 Identities = 221/323 (68%), Gaps = 5/323 (2%) Strand=Plus/Minus Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTA 160106 |||| |||| | || |||| |||||||| ||| || | ||||| ||| ||| | ||| Sbjct 8525961 TGTCTCAGAAGATCATCCAAACATTGGATGGCAAAGAGGTCAATGTCAATGTCAAGCTTA 8525902 Query 160107 TTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACG 160166 || || || | ||||| || || || ||||||| || ||| || | ||||| | | Sbjct 8525901 TTGGCAAATAAGTGGTGC---TTGTGCAGCATCCAGTTCAAGTCACCAGCTCCGAAAATG 8525845 Query 160167 CAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCA 160226 || || | | |||| | || | ||| | ||||| |||| ||||| | || ||| Sbjct 8525844 CACACCAAGTGATTGTGGTCCCCATCGCA--GTGGGTAGGGAGCACCTTTGGAAACATCA 8525787 Query 160227 CCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTAT 160286 || || ||||||||||||| ||||||||||| | || |||||||| || ||| || Sbjct 8525786 CCCTCCAAGTACTGCCACTTGACAAACCTGGCAACTGCATGCATGTCAGACAAGTCATAC 8525727 Query 160287 TTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGG 160346 || | | || | | |||||| || | || |||| ||| | ||| |||| || Sbjct 8525726 TTATGGTTTGTGGAGAGTGAACCGGGGACTTCAGGAATACTCTGGATGGTATCCCAGAGA 8525667 Query 160347 TGTTCGTCGGGGCTGTACGTGTC 160369 || || || |||||| ||||| Sbjct 8525666 TGCTCATCAAGGCTGTGTGTGTC 8525644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577124507190240