Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq12126 93.3 6e-14 seq6459 93.3 6e-14 seq1 84.2 3e-11 >seq12126 Length=7615049 Score = 93.3 bits (102), Expect = 6e-14 Identities = 162/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 |||||||| || || | ||||| | || || || || || || | || || ||| Sbjct 7457745 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 7457804 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || |||| || ||| || || || || || ||||| ||||| || ||||| || Sbjct 7457805 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 7457864 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || ||||||||||| | ||| || ||||| || |||||| | ||||| || || || Sbjct 7457865 CAGCAAAGATTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 7457924 Query 156000 AATATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 ||||| || ||| ||| | || |||||| | ||||| ||| | | || |||| Sbjct 7457925 AATAT-TCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGGTG 7457976 >seq6459 Length=16685579 Score = 93.3 bits (102), Expect = 6e-14 Identities = 162/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 |||||||| || || | ||||| | || || || || || || | || || ||| Sbjct 968730 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 968789 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || |||| || ||| || || || || || ||||| ||||| || ||||| || Sbjct 968790 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 968849 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || ||||||||||| | ||| || ||||| || |||||| | ||||| || || || Sbjct 968850 CAGCAAAGATTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 968909 Query 156000 AATATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGTG 156051 ||||| || ||| ||| | || |||||| | ||||| ||| | | || |||| Sbjct 968910 AATAT-TCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGACTTCGTGGTGGTG 968961 >seq1 Length=19716903 Score = 84.2 bits (92), Expect = 3e-11 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 |||||||| || || | ||||| | || || || || || || | || || ||| Sbjct 12236907 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 12236848 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 || |||| | ||| || || || || || ||| | ||||| || ||||| || Sbjct 12236847 TCGGATACGACAGAAAATGTAAAGGCCAAGATCCAGGATGAGGAAGGAATTCCTCCTGAT 12236788 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 || ||||||||||| | ||| || ||||| || |||||| | ||||| || || || Sbjct 12236787 CAGCAAAGATTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTAC 12236728 Query 156000 AATATATCCAAA-GAGGCGACGCTTCATTTAGTGTTAAGA 156038 ||||| || ||| ||| | || |||||| | ||||| ||| Sbjct 12236727 AATAT-TCAAAAGGAGTCTACTCTTCATCTTGTGTTGAGA 12236689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731751936398400