Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201
5-03-12] 13,124 sequences; 2,970,124,662 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq12126 141 2e-28
seq6459 141 2e-28
seq4805 136 8e-27
seq11570 127 4e-24
seq5149 123 5e-23
seq1 123 5e-23
seq7115 114 3e-20
seq4138 107 4e-18
seq2780 102 2e-16
seq10903 89.7 1e-12
seq4237 89.7 1e-12
seq5126 86.0 1e-11
>seq12126
Length=7615049
Score = 141 bits (156), Expect = 2e-28
Identities = 172/232 (74%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367
|||||| | ||| | || || | ||| | ||||| ||| ||| || ||||| || ||||
Sbjct 7457975 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAG 7457917
Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427
| || || ||| |||| |||| ||| || ||||||||||| ||||| || |||||||| |
Sbjct 7457916 ACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTTTGCTGATCAGGAG 7457857
Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487
| |||||||| ||||| || || || |||||||| ||| | ||| || | ||| |
Sbjct 7457856 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAA 7457797
Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
| || || || ||||| || || || | ||||| | || |||||||||||
Sbjct 7457796 CCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 7457745
>seq6459
Length=16685579
Score = 141 bits (156), Expect = 2e-28
Identities = 172/232 (74%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367
|||||| | ||| | || || | ||| | ||||| ||| ||| || ||||| || ||||
Sbjct 968960 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAG 968902
Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427
| || || ||| |||| |||| ||| || ||||||||||| ||||| || |||||||| |
Sbjct 968901 ACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTTTGCTGATCAGGAG 968842
Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487
| |||||||| ||||| || || || |||||||| ||| | ||| || | ||| |
Sbjct 968841 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAA 968782
Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
| || || || ||||| || || || | ||||| | || |||||||||||
Sbjct 968781 CCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 968730
>seq4805
Length=5228064
Score = 136 bits (150), Expect = 8e-27
Identities = 171/232 (74%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367
|||||| | ||| | || || | ||| | ||||| ||| ||| || ||||| || ||||
Sbjct 4473640 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAG 4473582
Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427
| || || ||| |||| |||| ||| || ||||||||||| | ||| || |||||||| |
Sbjct 4473581 ACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAG 4473522
Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487
| |||||||| ||||| || || || |||||||| ||| | ||| || | ||| |
Sbjct 4473521 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAA 4473462
Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
| || || || ||||| || || || | ||||| | || |||||||||||
Sbjct 4473461 CCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 4473410
>seq11570
Length=13276302
Score = 127 bits (140), Expect = 4e-24
Identities = 169/232 (73%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367
|||||| | ||| | || || | ||| | ||||| ||| ||| || ||||| || ||||
Sbjct 11748921 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAG 11748979
Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427
| || || ||| |||| |||| ||| || ||||||||||| | ||| || |||||||| |
Sbjct 11748980 ACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAG 11749039
Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487
| |||||||| || || || || || |||||||| ||| | ||| || | |||
Sbjct 11749040 GAATTCCTTCCTTCTCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAG 11749099
Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
| || || || ||||| | || || | ||||| || || |||||||||||
Sbjct 11749100 CCTCAAGGGTGATGGTCTGCCCCGTAAGGGTTTTCATGAAAATCTGCATTTT 11749151
>seq5149
Length=2416856
Score = 123 bits (136), Expect = 5e-23
Identities = 168/232 (72%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367
|||||| | ||| | || || | ||| | ||||| ||| ||| || ||||| || ||||
Sbjct 1496114 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAG 1496172
Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427
| || || ||| |||| |||| ||| || ||||||||||| | ||| || |||||||| |
Sbjct 1496173 ACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAG 1496232
Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487
| |||||||| ||||| || || || |||||||| | | ||| || | ||| |
Sbjct 1496233 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGTCATATCCGAGGGTTCAA 1496292
Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
| | || || ||||| || || || | ||||| | || |||||||||||
Sbjct 1496293 CCTGGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 1496344
>seq1
Length=19716903
Score = 123 bits (136), Expect = 5e-23
Identities = 168/232 (72%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367
|||||| | | | | || || | ||| | ||||| ||| ||| || ||||| || ||||
Sbjct 12236677 ACCACCACGAGGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAG 12236735
Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427
| || || | | |||| |||| ||| || ||||||||||| ||||| || |||||||| |
Sbjct 12236736 ACAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTTTGCTGATCAGGAG 12236795
Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487
| |||||||| | ||| || || || |||||||| | | | ||| || | ||| |
Sbjct 12236796 GAATTCCTTCCTCATCCTGGATCTTGGCCTTTACATTTTCTGTCGTATCCGAGGGTTCAA 12236855
Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
| || || || ||||| || || || | ||||| | || |||||||||||
Sbjct 12236856 CCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 12236907
>seq7115
Length=1795964
Score = 114 bits (126), Expect = 3e-20
Identities = 166/232 (72%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367
|||||| | ||| | || | | ||| | ||||| ||| ||| || || || | ||||
Sbjct 164090 ACCACCACAAAGTCTCAACAAAAGATGAAGAGTAGACTCCTTTTGA-ATGTTGCAGTCAG 164032
Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427
| || || ||| |||| |||| ||| | ||||||||||| | ||| || |||||||| |
Sbjct 164031 ACAAAGTACGTCCATCTTCCAGTTGCTCGCCAGCAAAGATCAGTCTTTGCTGATCAGGAG 163972
Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487
| |||||||| ||||| || || || |||||||| | | |||||| | ||| |
Sbjct 163971 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGCCGTATCTGAGGGTTCAA 163912
Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
| || || || || || || || ||| ||||| | ||| |||||||||||
Sbjct 163911 CCTCAAGGGTGATAGTCTTCCCCCTTAGGGTTTTCACAAAAATCTGCATTTT 163860
>seq4138
Length=9750826
Score = 107 bits (118), Expect = 4e-18
Identities = 164/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGA 192368
||||| | ||| | || | | ||| | ||||| ||| ||| || ||||| || |||||
Sbjct 3988029 CCACCACGAAGTCTCAACGCAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAGA 3987971
Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428
|| || | | |||| |||| ||| || ||| ||||||| ||| || ||| |||| ||
Sbjct 3987970 CAAAGTCCATCCATCTTCCAGTTGCTTGCCAACAAAGATCCCTCTTTGCTGAGCAGGAGG 3987911
Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488
|||||||| ||||| || || || |||||||| ||| | ||| || | ||| ||
Sbjct 3987910 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGTTTCAAC 3987851
Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
|| || || ||||| || || | | ||||| | || |||||||||||
Sbjct 3987850 CTCGAGGGTGATGGTCTTCCCCATAAGGGTTTTCACGAAAATCTGCATTTT 3987800
>seq2780
Length=8382912
Score = 102 bits (112), Expect = 2e-16
Identities = 153/215 (71%), Gaps = 2/215 (1%)
Strand=Plus/Plus
Query 192325 AATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCA 192384
|| || ||||| | ||||| || ||| || ||||| || ||||| || || ||| ||||
Sbjct 5628211 AACACAAAATGAAGAGTAGACTTTTT-GA-ATATTGTAGTCAGACAAAGTACGTCCATCT 5628268
Query 192385 TCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCT 192444
|||| || || ||| ||||||| | |||||| ||| |||| || |||||||| ||| |
Sbjct 5628269 TCCAGCTGCTTGCCAACAAAGATCAGTCTCTGCTGACCAGGAGGAATTCCTTCCTTAACC 5628328
Query 192445 TGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTT 192504
|| || || | |||||| ||| | || || | ||| | || || || |||||
Sbjct 5628329 TGGATCTTGGCCTATACATTTTCTATTGTGTCCGAGGGTTCAGCCTCGAGGGTGATGGTC 5628388
Query 192505 TTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
|| || || | ||| | | || |||||||||||
Sbjct 5628389 TTCCCTGTAAGGGTTATCACGAAAATCTGCATTTT 5628423
>seq10903
Length=19515036
Score = 89.7 bits (98), Expect = 1e-12
Identities = 115/159 (72%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439
|||| |||||||| || ||||||||||| | ||| || |||||||| || |||||||| |
Sbjct 16763702 CATCTTCCAATTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCT 16763761
Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499
|||| || || || |||||| | | | | || | | ||| || || || || |
Sbjct 16763762 TATCCTGGATATTGGCCTTTACAGTTTCTGTTGTATTCAAGGGTTCAACCTCAAGGGTGA 16763821
Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTT 192538
|||| || || || | ||||| | || ||||||||||
Sbjct 16763822 TGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCATTT 16763860
Score = 89.7 bits (98), Expect = 1e-12
Identities = 115/159 (72%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439
|||| |||||||| || ||||||||||| | ||| || |||||||| || |||||||| |
Sbjct 16768623 CATCTTCCAATTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCT 16768682
Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499
|||| || || || |||||| | | | | || | | ||| || || || || |
Sbjct 16768683 TATCCTGGATATTGGCCTTTACAGTTTCTGTTGTATTCAAGGGTTCAACCTCAAGGGTGA 16768742
Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTT 192538
|||| || || || | ||||| | || ||||||||||
Sbjct 16768743 TGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCATTT 16768781
>seq4237
Length=27496150
Score = 89.7 bits (98), Expect = 1e-12
Identities = 162/232 (70%), Gaps = 5/232 (2%)
Strand=Plus/Minus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367
|||||| ||| | || || | ||| | ||| | ||| ||| || || || || ||||
Sbjct 25342144 ACCACCAGGAAGTCTCAACACAAGATGAAGAGTGGGCTCCTTTTGA-ATGTTGTAGTCAG 25342086
Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427
| | || | | |||| |||| ||| || ||||||||||||| |||||| | |||||| |
Sbjct 25342085 ACA--GTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATTAGTCTCTGCTCATCAGGAG 25342028
Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487
| ||||||| ||||| || || || |||||||| ||| ||| | ||| |
Sbjct 25342027 GAATTCCTTGCTTATCCTGGATCTTGGCCTTTACATTTTCTATCATATCCACGGGTTCGA 25341968
Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539
| || | || ||||| || || | ||| | ||| || || |||||| ||||
Sbjct 25341967 CCTCAGGGGTGATGGTCTTCCCTG-TAAGGATTTTATGAAAATCTGCGTTTT 25341917
>seq5126
Length=8658521
Score = 86.0 bits (94), Expect = 1e-11
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| |||||||| || || | || | || || || | |||||| ||| || || |||
Sbjct 3006078 ATCCCACCTCTGAGGCGGAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCA 3006019
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
|| | || || |||| |||| || || ||||||||||| || ||||| || |||||
Sbjct 3006018 GACAGCGTGCGCCCATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGA 3005959
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || ||||| || ||||| || || || ||||| || | || | ||
Sbjct 3005958 GGGATGCCTTCCTTGTCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCGCTGGGCTCG 3005899
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || || |||||||| || ||||| | || || | || ||||||||
Sbjct 3005898 ACCTCGAGGGTAATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 3005849
Score = 84.2 bits (92), Expect = 4e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 192328 ACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCC 192387
|| || || | ||| | |||||| ||| || |||||||| | || ||| |||| |||
Sbjct 3006285 ACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAATCAGACAGGGTGCGTCCATCTTCC 3006226
Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447
| ||||| ||||||||||| || ||||| || ||||| || || ||||| || || ||
Sbjct 3006225 AGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGA 3006166
Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507
|| || || ||||| || | || | || || || || || ||||| ||
Sbjct 3006165 ATCTTTGCCTTGACATTCTCAATGGTGTCGCTGGGCTCGACCTCGAGGGTGATGGTCTTG 3006106
Query 192508 CCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||| | || || | || ||||||||
Sbjct 3006105 CCAGTCAGGGTCTTCACGAAGATCTGCAT 3006077
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984314458457400
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