Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq12126 140 6e-28 seq6459 140 6e-28 seq4805 136 7e-27 seq11570 127 4e-24 seq5149 122 2e-22 seq1 122 2e-22 seq7115 104 4e-17 seq4138 104 4e-17 seq2780 96.9 6e-15 >seq12126 Length=7615049 Score = 140 bits (154), Expect = 6e-28 Identities = 175/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | ||||| ||| || |||||| Sbjct 7457984 TTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATT 7457925 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| ||| | || |||| ||| || |||||||| || ||||| || || Sbjct 7457924 GTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTTTGCTG 7457865 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || |||||||| ||| ||||| || Sbjct 7457864 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGA 7457805 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || || || || ||||| || || || | ||||| | ||| ||||||||||| Sbjct 7457804 GGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 7457745 >seq6459 Length=16685579 Score = 140 bits (154), Expect = 6e-28 Identities = 175/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | ||||| ||| || |||||| Sbjct 968969 TTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATT 968910 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| ||| | || |||| ||| || |||||||| || ||||| || || Sbjct 968909 GTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTTTGCTG 968850 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || |||||||| ||| ||||| || Sbjct 968849 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGA 968790 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || || || || ||||| || || || | ||||| | ||| ||||||||||| Sbjct 968789 GGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 968730 >seq4805 Length=5228064 Score = 136 bits (150), Expect = 7e-27 Identities = 174/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | ||||| ||| || |||||| Sbjct 4473649 TTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATT 4473590 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| ||| | || |||| ||| || |||||||| || | ||| || || Sbjct 4473589 GTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTG 4473530 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || |||||||| ||| ||||| || Sbjct 4473529 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGA 4473470 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || || || || ||||| || || || | ||||| | ||| ||||||||||| Sbjct 4473469 GGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 4473410 >seq11570 Length=13276302 Score = 127 bits (140), Expect = 4e-24 Identities = 172/240 (72%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | ||||| ||| || |||||| Sbjct 11748912 TTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATT 11748971 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| ||| | || |||| ||| || |||||||| || | ||| || || Sbjct 11748972 GTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTG 11749031 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| || || || || || |||||||| ||| ||||| || Sbjct 11749032 ATCAGGAGGAATTCCTTCCTTCTCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGA 11749091 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| | || || || ||||| | || || | ||||| ||||| ||||||||||| Sbjct 11749092 GGGTTCAGCCTCAAGGGTGATGGTCTGCCCCGTAAGGGTTTTCATGAAAATCTGCATTTT 11749151 >seq5149 Length=2416856 Score = 122 bits (134), Expect = 2e-22 Identities = 171/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | ||||| ||| || |||||| Sbjct 1496105 TTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATT 1496164 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| ||| | || |||| ||| || |||||||| || | ||| || || Sbjct 1496165 GTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTG 1496224 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || |||||||| | | |||| || Sbjct 1496225 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGTCATATCCGA 1496284 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || | || || ||||| || || || | ||||| | ||| ||||||||||| Sbjct 1496285 GGGTTCAACCTGGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 1496344 >seq1 Length=19716903 Score = 122 bits (134), Expect = 2e-22 Identities = 171/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | | ||| || || | ||| | ||||| ||| || |||||| Sbjct 12236668 TTTCTTAGCACCACCACGAGGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATT 12236727 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| | | | || |||| ||| || |||||||| || ||||| || || Sbjct 12236728 GTAGTCAGACAAAGTACATCCATCTTCCAGTTGCTTGCCAGCAAAGATCAATCTTTGCTG 12236787 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| | ||| || || || |||||||| | | ||||| || Sbjct 12236788 ATCAGGAGGAATTCCTTCCTCATCCTGGATCTTGGCCTTTACATTTTCTGTCGTATCCGA 12236847 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || || || || ||||| || || || | ||||| | ||| ||||||||||| Sbjct 12236848 GGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 12236907 >seq7115 Length=1795964 Score = 104 bits (114), Expect = 4e-17 Identities = 167/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || | | ||| | ||||| ||| || ||| || Sbjct 164099 TTTCTTAGCACCACCACAAAGTCTCAACAAAAGATGAAGAGTAGACTCCTTTTGAATGTT 164040 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 | || || |||| ||| | || |||| ||| | |||||||| || | ||| || || Sbjct 164039 GCAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTCGCCAGCAAAGATCAGTCTTTGCTG 163980 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || |||||||| | |||||||| Sbjct 163979 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGCCGTATCTGA 163920 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || || || || || || || || ||| ||||| | || ||||||||||| Sbjct 163919 GGGTTCAACCTCAAGGGTGATAGTCTTCCCCCTTAGGGTTTTCACAAAAATCTGCATTTT 163860 >seq4138 Length=9750826 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 ||||| | ||||| || | | ||| | ||||| ||| || |||||| || || || Sbjct 3988029 CCACCACGAAGTCTCAACGCAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 3987970 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 |||| | | | || |||| ||| || ||| |||| || ||| || || |||| || Sbjct 3987969 AAAGTCCATCCATCTTCCAGTTGCTTGCCAACAAAGATCCCTCTTTGCTGAGCAGGAGGA 3987910 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 |||||||| ||||| || || || |||||||| ||| ||||| || | ||| || Sbjct 3987909 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGTTTCAACC 3987850 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || || ||||| || || | | ||||| | ||| ||||||||||| Sbjct 3987849 TCGAGGGTGATGGTCTTCCCCATAAGGGTTTTCACGAAAATCTGCATTTT 3987800 >seq2780 Length=8382912 Score = 96.9 bits (106), Expect = 6e-15 Identities = 166/240 (69%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || | |||| | |||| || || ||||| | ||||| || ||| |||||| Sbjct 5628186 TTTCTTAGCAGCACCACAGAGTCTCAACACAAAATGAAGAGTAGACTTTTTG--AATATT 5628243 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| ||| | || |||| || || ||| |||| || | |||||| || Sbjct 5628244 GTAGTCAGACAAAGTACGTCCATCTTCCAGCTGCTTGCCAACAAAGATCAGTCTCTGCTG 5628303 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 |||| || |||||||| ||| | || || || | |||||| ||| || || || Sbjct 5628304 ACCAGGAGGAATTCCTTCCTTAACCTGGATCTTGGCCTATACATTTTCTATTGTGTCCGA 5628363 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| | || || || ||||| || || || | ||| | | ||| ||||||||||| Sbjct 5628364 GGGTTCAGCCTCGAGGGTGATGGTCTTCCCTGTAAGGGTTATCACGAAAATCTGCATTTT 5628423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 904987512439200