Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq3971 113 1e-19 seq7237 91.5 4e-13 >seq3971 Length=4903791 Score = 113 bits (124), Expect = 1e-19 Identities = 367/565 (65%), Gaps = 9/565 (2%) Strand=Plus/Minus Query 133076 TTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAAGAT 133135 ||||| || ||||| || || || | || || |||||||||||||| || | ||| | Sbjct 745224 TTTGTCATCTTCCCCATCGAGTACCATGATATCTGGCAGATGTATAAGAAGGCGGAAGCT 745165 Query 133136 TTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGGAAGCCCTT 133195 | || ||||| | || || || | ||||| ||| ||||||||| |||| Sbjct 745164 TCCTTCTGGACCGCCGAGGAGGTGGACCTGTCCAAGGACGTTTGGCACTGGGAATCCCTG 745105 Query 133196 ACTGGGGATGAAAAACATTTTATTTCTATGATTTTAGCGTTTTTTGCTGCGAGTGATGGT 133255 | || || | | ||||||| ||| ||| | | || ||||| || |||||||| Sbjct 745104 AAGCCCGAGGAGAGAGATTTTATATCTCATATTCTGGTTTTCTTTGCAGCAAGTGATGGC 745045 Query 133256 ATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCCGT 133315 || || |||||| || | || |||| ||||||||| || | |||||||| Sbjct 745044 ATAGTAAATGAAAACTTGGTGGAGCGATTTAGCCAAGAAGTTCAGATGACAGAAGCCCGC 744985 Query 133316 GCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACTCTA 133375 || | ||| | || ||||| || ||||| || |||||| | ||| | | Sbjct 744984 TGTTTCTGTGGCTTCCAAATTGCCATAGAAAACATACATTCTGAAATGTATAGTTTCCGT 744925 Query 133376 ATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCCATT--AGCG 133433 ||||| |||||||| |||||| || | | | | || |||| |||||| | || Sbjct 744924 ATTGACACTTACATAAAAGATCCCAAAGAAAGGGAATTTCTCCTCAATGCCATTGAAACG 744865 Query 133434 AATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGACAAGCGTG 133493 | | |||||| | || ||||| | || ||||| | | ||||| |||||| | Sbjct 744864 A--TGCCTTGTGTCAAGAAGAAGGCAGATTGGGCCTTGCACTGGATTGGGGACAAAGAAG 744807 Query 133494 CGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTG 133553 | | | || | ||| | || | ||||||| || ||| ||||| |||| |||| Sbjct 744806 CTACCTATGGTGAACGTGTTGTAGTCTTTGCTGCAGCAGAAGGCATCTTTT---CTGGT- 744751 Query 133554 CGTTCTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCT 133612 || ||| || || || ||||| || || || || | | ||||| || ||||| Sbjct 744750 TATTTTGCATCGATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCC 744691 Query 133613 AACGAACTTATTTCAAGGGACGAGG 133637 || ||||||||| || || |||| Sbjct 744690 AATGAACTTATTAGCAGAGATGAGG 744666 >seq7237 Length=5934118 Score = 91.5 bits (100), Expect = 4e-13 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666 |||||| || || || ||||| || ||||| || || ||||||| ||||| || || Sbjct 3551916 ACCAGTCTCAGCAGTCTTGACAGCCGTGTCAATGAGCCCCTCACGACCCCCCATGGCGTG 3551857 Query 302667 GAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGC 302726 ||| || | ||| ||| || || | | ||||| |||| || || ||||| Sbjct 3551856 GAAAAAGAACTCGGTGGGTGTGAGGCCGGCTAGGTAGGAGTTCTCCACAAAGCCACGGCT 3551797 Query 302727 CTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGG 302786 ||||||| | ||| |||| | ||||| ||||| |||| || || |||| |||| Sbjct 3551796 CTCGGGCCCGTAGTCATCCTTGATGAAGTGAGGCAGAGTCCGGTGCTTGAAGCCAAATGG 3551737 Query 302787 GATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAA 302839 || ||||| || || ||||||||||| || | | | ||| | ||| |||| Sbjct 3551736 AATCCGCTTGCCCTCCACGTTCTGCTGCCCGACGACAGCAATGACCTGGGAAA 3551684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471570112030788