Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201
5-03-12] 13,124 sequences; 2,970,124,662 total letters
Query= NC_023442.1
Length=120420
Score E
Sequences producing significant alignments: (Bits) Value
seq7115 122 7e-23
seq12126 120 2e-22
seq6459 120 2e-22
seq4805 114 1e-20
seq11570 105 5e-18
seq1 105 5e-18
seq5149 102 6e-17
seq10903 100 2e-16
seq4138 86.0 5e-12
seq2780 86.0 5e-12
seq11792 82.4 6e-11
>seq7115
Length=1795964
Score = 122 bits (134), Expect = 7e-23
Identities = 151/207 (73%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642
|||||| || || || ||||||||||| | || | | || || ||| || |||||
Sbjct 164066 ATGAAGAGTAGACTCCTTTTGAATGTTGCAGTCAGACAAAGTACGTCCATCTTCCAGTTG 164007
Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702
| ||||||| | |||| |||||||||||| || ||||| || || || || || | ||
Sbjct 164006 CTCGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 163947
Query 29703 TTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762
|| ||| ||||| | || || || |||| || ||||| || ||||| || || |
Sbjct 163946 GGCCTTTACATTTTCTGCCGTATCTGAGGGTTCAACCTCAAGGGTGATAGTCTTCCCCCT 163887
Query 29763 TAAGGTTTTAACAAATATCTGCATTTT 29789
|| |||||| ||||| |||||||||||
Sbjct 163886 TAGGGTTTTCACAAAAATCTGCATTTT 163860
>seq12126
Length=7615049
Score = 120 bits (132), Expect = 2e-22
Identities = 156/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633
|| ||| | |||||| || || || |||||||| || || || | | || || |||
Sbjct 7457960 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 7457901
Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693
|| ||||| ||||||||| | ||||||||||||||||| || ||||| || || || ||
Sbjct 7457900 TTCCAGTTGCTTGCCAGCAAAGATCAATCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 7457841
Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753
|| | || || ||| |||||| || || || |||| || || || || || ||
Sbjct 7457840 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 7457781
Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|| || || | |||||| || || |||||||||||
Sbjct 7457780 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 7457745
>seq6459
Length=16685579
Score = 120 bits (132), Expect = 2e-22
Identities = 156/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633
|| ||| | |||||| || || || |||||||| || || || | | || || |||
Sbjct 968945 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 968886
Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693
|| ||||| ||||||||| | ||||||||||||||||| || ||||| || || || ||
Sbjct 968885 TTCCAGTTGCTTGCCAGCAAAGATCAATCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 968826
Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753
|| | || || ||| |||||| || || || |||| || || || || || ||
Sbjct 968825 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 968766
Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|| || || | |||||| || || |||||||||||
Sbjct 968765 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 968730
>seq4805
Length=5228064
Score = 114 bits (126), Expect = 1e-20
Identities = 155/216 (72%), Gaps = 0/216 (0%)
Strand=Plus/Minus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633
|| ||| | |||||| || || || |||||||| || || || | | || || |||
Sbjct 4473625 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 4473566
Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693
|| ||||| ||||||||| | |||| |||||||||||| || ||||| || || || ||
Sbjct 4473565 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 4473506
Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753
|| | || || ||| |||||| || || || |||| || || || || || ||
Sbjct 4473505 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 4473446
Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|| || || | |||||| || || |||||||||||
Sbjct 4473445 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 4473410
>seq11570
Length=13276302
Score = 105 bits (116), Expect = 5e-18
Identities = 153/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633
|| ||| | |||||| || || || |||||||| || || || | | || || |||
Sbjct 11748936 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 11748995
Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693
|| ||||| ||||||||| | |||| |||||||||||| || ||||| || || || ||
Sbjct 11748996 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTCTC 11749055
Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753
|| | || || ||| |||||| || || || |||| | ||||| || || ||
Sbjct 11749056 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAGCCTCAAGGGTGATGGT 11749115
Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
| || || | |||||| | || |||||||||||
Sbjct 11749116 CTGCCCCGTAAGGGTTTTCATGAAAATCTGCATTTT 11749151
>seq1
Length=19716903
Score = 105 bits (116), Expect = 5e-18
Identities = 153/216 (71%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633
|| ||| | |||||| || || || |||||||| || || || | | || | |||
Sbjct 12236692 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACATCCATC 12236751
Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693
|| ||||| ||||||||| | ||||||||||||||||| || ||||| || || | ||
Sbjct 12236752 TTCCAGTTGCTTGCCAGCAAAGATCAATCTTTGCTGATCAGGAGGAATTCCTTCCTCATC 12236811
Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753
|| | || || ||| ||||| || || || |||| || || || || || ||
Sbjct 12236812 CTGGATCTTGGCCTTTACATTTTCTGTCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 12236871
Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|| || || | |||||| || || |||||||||||
Sbjct 12236872 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 12236907
>seq5149
Length=2416856
Score = 102 bits (112), Expect = 6e-17
Identities = 152/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633
|| ||| | |||||| || || || |||||||| || || || | | || || |||
Sbjct 1496129 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 1496188
Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693
|| ||||| ||||||||| | |||| |||||||||||| || ||||| || || || ||
Sbjct 1496189 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 1496248
Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753
|| | || || ||| ||||| | || || |||| || | || || || ||
Sbjct 1496249 CTGGATCTTGGCCTTTACATTTTCTGTCATATCCGAGGGTTCAACCTGGAGGGTGATGGT 1496308
Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|| || || | |||||| || || |||||||||||
Sbjct 1496309 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 1496344
>seq10903
Length=19515036
Score = 100 bits (110), Expect = 2e-16
Identities = 151/216 (70%), Gaps = 13/216 (6%)
Strand=Plus/Plus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA-AT 29632
|| ||| | ||||||||| || || ||||||||||| || || ||| ||
Sbjct 16763657 CAACACAAGATGAAGCGTAGACTCCTTTTGAATGTTGTAGTC------------AGACAT 16763704
Query 29633 CATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGT 29692
| || | ||| ||||||||| | |||| |||||||||||| || ||||| || || || |
Sbjct 16763705 CTTCCAATTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTAT 16763764
Query 29693 CTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG 29752
| || | || || ||||||||| || | | |||| || ||||| || || |
Sbjct 16763765 CCTGGATATTGGCCTTTACAGTTTCTGTTGTATTCAAGGGTTCAACCTCAAGGGTGATGG 16763824
Query 29753 TTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTT 29788
| || || || | |||||| || || ||||||||||
Sbjct 16763825 TCTTCCCTGTAAGGGTTTTCACGAAAATCTGCATTT 16763860
Score = 100 bits (110), Expect = 2e-16
Identities = 151/216 (70%), Gaps = 13/216 (6%)
Strand=Plus/Plus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA-AT 29632
|| ||| | ||||||||| || || ||||||||||| || || ||| ||
Sbjct 16768578 CAACACAAGATGAAGCGTAGACTCCTTTTGAATGTTGTAGTC------------AGACAT 16768625
Query 29633 CATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGT 29692
| || | ||| ||||||||| | |||| |||||||||||| || ||||| || || || |
Sbjct 16768626 CTTCCAATTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTAT 16768685
Query 29693 CTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG 29752
| || | || || ||||||||| || | | |||| || ||||| || || |
Sbjct 16768686 CCTGGATATTGGCCTTTACAGTTTCTGTTGTATTCAAGGGTTCAACCTCAAGGGTGATGG 16768745
Query 29753 TTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTT 29788
| || || || | |||||| || || ||||||||||
Sbjct 16768746 TCTTCCCTGTAAGGGTTTTCACGAAAATCTGCATTT 16768781
>seq4138
Length=9750826
Score = 86.0 bits (94), Expect = 5e-12
Identities = 143/207 (69%), Gaps = 0/207 (0%)
Strand=Plus/Minus
Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642
|||||| || || || |||||||| || || || | | || | ||| || |||||
Sbjct 3988006 ATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTCCATCCATCTTCCAGTTG 3987947
Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702
|||||| || | ||| |||||||||| | || ||||| || || || || || | ||
Sbjct 3987946 CTTGCCAACAAAGATCCCTCTTTGCTGAGCAGGAGGAATTCCTTCCTTATCCTGGATCTT 3987887
Query 29703 TTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762
|| ||| |||||| || || || ||| || || || || || || || || |
Sbjct 3987886 GGCCTTTACATTTTCTATCGTATCCGAGGTTTCAACCTCGAGGGTGATGGTCTTCCCCAT 3987827
Query 29763 TAAGGTTTTAACAAATATCTGCATTTT 29789
| |||||| || || |||||||||||
Sbjct 3987826 AAGGGTTTTCACGAAAATCTGCATTTT 3987800
>seq2780
Length=8382912
Score = 86.0 bits (94), Expect = 5e-12
Identities = 149/216 (69%), Gaps = 2/216 (1%)
Strand=Plus/Plus
Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633
|| ||| |||||||| || || |||||||||| || || || | | || || |||
Sbjct 5628210 CAACACAAAATGAAGAGTAGA--CTTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 5628267
Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693
|| || || |||||| || | |||| ||| |||||| | || ||||| || || || |
Sbjct 5628268 TTCCAGCTGCTTGCCAACAAAGATCAGTCTCTGCTGACCAGGAGGAATTCCTTCCTTAAC 5628327
Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753
|| | || | ||| |||||| ||||| || |||| | || || || || ||
Sbjct 5628328 CTGGATCTTGGCCTATACATTTTCTATTGTGTCCGAGGGTTCAGCCTCGAGGGTGATGGT 5628387
Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789
|| || || | |||| | || || |||||||||||
Sbjct 5628388 CTTCCCTGTAAGGGTTATCACGAAAATCTGCATTTT 5628423
>seq11792
Length=7415672
Score = 82.4 bits (90), Expect = 6e-11
Identities = 155/227 (68%), Gaps = 2/227 (1%)
Strand=Plus/Plus
Query 29562 TCCCCTCAAACGCA--GCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619
|| ||||| | ||| | |||| || || ||||| ||||| || ||||||||||| | |
Sbjct 6703157 TCACCTCAGAGGCAAAGTACCACCTGCAGGGTGGACTCTTTCTGGATGTTATAATCTGAA 6703216
Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679
| ||| | ||| || | |||||||| || |||||| ||||| || || |
Sbjct 6703217 AGAGTGTGGCCATCCTCCAACTGTTTGCCCACAAATATCAGATGCTGCTGGTCAGGTAGG 6703276
Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739
|| ||||| ||||| || | || ||||||| |||| | |||||| | | ||
Sbjct 6703277 ATGCCCTCCTTGTCATGGATCTTGGCTTTGACATTTTCACCGGTGTCACTGGGCTGGACC 6703336
Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786
|||| || || ||| | || || | ||| || ||| | ||||||||
Sbjct 6703337 TCAAAGGTGATGGTTCTTCCTGTGAGGGTCTTTACAGAGATCTGCAT 6703383
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 385157584670484
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |