Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq7115 122 7e-23 seq12126 120 2e-22 seq6459 120 2e-22 seq4805 114 1e-20 seq11570 105 5e-18 seq1 105 5e-18 seq5149 102 6e-17 seq10903 100 2e-16 seq4138 86.0 5e-12 seq2780 86.0 5e-12 seq11792 82.4 6e-11 >seq7115 Length=1795964 Score = 122 bits (134), Expect = 7e-23 Identities = 151/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642 |||||| || || || ||||||||||| | || | | || || ||| || ||||| Sbjct 164066 ATGAAGAGTAGACTCCTTTTGAATGTTGCAGTCAGACAAAGTACGTCCATCTTCCAGTTG 164007 Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702 | ||||||| | |||| |||||||||||| || ||||| || || || || || | || Sbjct 164006 CTCGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 163947 Query 29703 TTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 || ||| ||||| | || || || |||| || ||||| || ||||| || || | Sbjct 163946 GGCCTTTACATTTTCTGCCGTATCTGAGGGTTCAACCTCAAGGGTGATAGTCTTCCCCCT 163887 Query 29763 TAAGGTTTTAACAAATATCTGCATTTT 29789 || |||||| ||||| ||||||||||| Sbjct 163886 TAGGGTTTTCACAAAAATCTGCATTTT 163860 >seq12126 Length=7615049 Score = 120 bits (132), Expect = 2e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| || || || |||||||| || || || | | || || ||| Sbjct 7457960 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 7457901 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||||| | ||||||||||||||||| || ||||| || || || || Sbjct 7457900 TTCCAGTTGCTTGCCAGCAAAGATCAATCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 7457841 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| || || || |||| || || || || || || Sbjct 7457840 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 7457781 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || | |||||| || || ||||||||||| Sbjct 7457780 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 7457745 >seq6459 Length=16685579 Score = 120 bits (132), Expect = 2e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| || || || |||||||| || || || | | || || ||| Sbjct 968945 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 968886 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||||| | ||||||||||||||||| || ||||| || || || || Sbjct 968885 TTCCAGTTGCTTGCCAGCAAAGATCAATCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 968826 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| || || || |||| || || || || || || Sbjct 968825 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 968766 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || | |||||| || || ||||||||||| Sbjct 968765 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 968730 >seq4805 Length=5228064 Score = 114 bits (126), Expect = 1e-20 Identities = 155/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| || || || |||||||| || || || | | || || ||| Sbjct 4473625 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 4473566 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||||| | |||| |||||||||||| || ||||| || || || || Sbjct 4473565 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 4473506 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| || || || |||| || || || || || || Sbjct 4473505 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 4473446 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || | |||||| || || ||||||||||| Sbjct 4473445 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 4473410 >seq11570 Length=13276302 Score = 105 bits (116), Expect = 5e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| || || || |||||||| || || || | | || || ||| Sbjct 11748936 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 11748995 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||||| | |||| |||||||||||| || ||||| || || || || Sbjct 11748996 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTCTC 11749055 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| |||||| || || || |||| | ||||| || || || Sbjct 11749056 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAGCCTCAAGGGTGATGGT 11749115 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 | || || | |||||| | || ||||||||||| Sbjct 11749116 CTGCCCCGTAAGGGTTTTCATGAAAATCTGCATTTT 11749151 >seq1 Length=19716903 Score = 105 bits (116), Expect = 5e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| || || || |||||||| || || || | | || | ||| Sbjct 12236692 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACATCCATC 12236751 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||||| | ||||||||||||||||| || ||||| || || | || Sbjct 12236752 TTCCAGTTGCTTGCCAGCAAAGATCAATCTTTGCTGATCAGGAGGAATTCCTTCCTCATC 12236811 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| ||||| || || || |||| || || || || || || Sbjct 12236812 CTGGATCTTGGCCTTTACATTTTCTGTCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 12236871 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || | |||||| || || ||||||||||| Sbjct 12236872 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 12236907 >seq5149 Length=2416856 Score = 102 bits (112), Expect = 6e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| | |||||| || || || |||||||| || || || | | || || ||| Sbjct 1496129 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 1496188 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || ||||| ||||||||| | |||| |||||||||||| || ||||| || || || || Sbjct 1496189 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 1496248 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || || ||| ||||| | || || |||| || | || || || || Sbjct 1496249 CTGGATCTTGGCCTTTACATTTTCTGTCATATCCGAGGGTTCAACCTGGAGGGTGATGGT 1496308 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || | |||||| || || ||||||||||| Sbjct 1496309 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 1496344 >seq10903 Length=19515036 Score = 100 bits (110), Expect = 2e-16 Identities = 151/216 (70%), Gaps = 13/216 (6%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA-AT 29632 || ||| | ||||||||| || || ||||||||||| || || ||| || Sbjct 16763657 CAACACAAGATGAAGCGTAGACTCCTTTTGAATGTTGTAGTC------------AGACAT 16763704 Query 29633 CATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGT 29692 | || | ||| ||||||||| | |||| |||||||||||| || ||||| || || || | Sbjct 16763705 CTTCCAATTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTAT 16763764 Query 29693 CTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG 29752 | || | || || ||||||||| || | | |||| || ||||| || || | Sbjct 16763765 CCTGGATATTGGCCTTTACAGTTTCTGTTGTATTCAAGGGTTCAACCTCAAGGGTGATGG 16763824 Query 29753 TTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTT 29788 | || || || | |||||| || || |||||||||| Sbjct 16763825 TCTTCCCTGTAAGGGTTTTCACGAAAATCTGCATTT 16763860 Score = 100 bits (110), Expect = 2e-16 Identities = 151/216 (70%), Gaps = 13/216 (6%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA-AT 29632 || ||| | ||||||||| || || ||||||||||| || || ||| || Sbjct 16768578 CAACACAAGATGAAGCGTAGACTCCTTTTGAATGTTGTAGTC------------AGACAT 16768625 Query 29633 CATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGT 29692 | || | ||| ||||||||| | |||| |||||||||||| || ||||| || || || | Sbjct 16768626 CTTCCAATTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTAT 16768685 Query 29693 CTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAG 29752 | || | || || ||||||||| || | | |||| || ||||| || || | Sbjct 16768686 CCTGGATATTGGCCTTTACAGTTTCTGTTGTATTCAAGGGTTCAACCTCAAGGGTGATGG 16768745 Query 29753 TTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTT 29788 | || || || | |||||| || || |||||||||| Sbjct 16768746 TCTTCCCTGTAAGGGTTTTCACGAAAATCTGCATTT 16768781 >seq4138 Length=9750826 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/207 (69%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 29583 ATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTG 29642 |||||| || || || |||||||| || || || | | || | ||| || ||||| Sbjct 3988006 ATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTCCATCCATCTTCCAGTTG 3987947 Query 29643 TTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTT 29702 |||||| || | ||| |||||||||| | || ||||| || || || || || | || Sbjct 3987946 CTTGCCAACAAAGATCCCTCTTTGCTGAGCAGGAGGAATTCCTTCCTTATCCTGGATCTT 3987887 Query 29703 TTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 || ||| |||||| || || || ||| || || || || || || || || | Sbjct 3987886 GGCCTTTACATTTTCTATCGTATCCGAGGTTTCAACCTCGAGGGTGATGGTCTTCCCCAT 3987827 Query 29763 TAAGGTTTTAACAAATATCTGCATTTT 29789 | |||||| || || ||||||||||| Sbjct 3987826 AAGGGTTTTCACGAAAATCTGCATTTT 3987800 >seq2780 Length=8382912 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 || ||| |||||||| || || |||||||||| || || || | | || || ||| Sbjct 5628210 CAACACAAAATGAAGAGTAGA--CTTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 5628267 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || || || |||||| || | |||| ||| |||||| | || ||||| || || || | Sbjct 5628268 TTCCAGCTGCTTGCCAACAAAGATCAGTCTCTGCTGACCAGGAGGAATTCCTTCCTTAAC 5628327 Query 29694 TTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGT 29753 || | || | ||| |||||| ||||| || |||| | || || || || || Sbjct 5628328 CTGGATCTTGGCCTATACATTTTCTATTGTGTCCGAGGGTTCAGCCTCGAGGGTGATGGT 5628387 Query 29754 TTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || | |||| | || || ||||||||||| Sbjct 5628388 CTTCCCTGTAAGGGTTATCACGAAAATCTGCATTTT 5628423 >seq11792 Length=7415672 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/227 (68%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 29562 TCCCCTCAAACGCA--GCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | ||| | |||| || || ||||| ||||| || ||||||||||| | | Sbjct 6703157 TCACCTCAGAGGCAAAGTACCACCTGCAGGGTGGACTCTTTCTGGATGTTATAATCTGAA 6703216 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| | ||| || | |||||||| || |||||| ||||| || || | Sbjct 6703217 AGAGTGTGGCCATCCTCCAACTGTTTGCCCACAAATATCAGATGCTGCTGGTCAGGTAGG 6703276 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | || ||||||| |||| | |||||| | | || Sbjct 6703277 ATGCCCTCCTTGTCATGGATCTTGGCTTTGACATTTTCACCGGTGTCACTGGGCTGGACC 6703336 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||| || || ||| | || || | ||| || ||| | |||||||| Sbjct 6703337 TCAAAGGTGATGGTTCTTCCTGTGAGGGTCTTTACAGAGATCTGCAT 6703383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385157584670484