Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_024303.1 Length=144898 Score E Sequences producing significant alignments: (Bits) Value seq558 143 2e-29 seq7904 93.3 4e-14 >seq558 Length=6924777 Score = 143 bits (158), Expect = 2e-29 Identities = 716/1130 (63%), Gaps = 73/1130 (6%) Strand=Plus/Minus Query 20205 ATGCCTTTTGTGTGATAGATCTTGGAGAAATTGTGCAGAGACATTTTAGATGGCTCAAGG 20264 ||||||| | |||| ||| || ||||| ||| | ||| |||| | || ||| | || | Sbjct 6843464 ATGCCTTCTATGTGGCAGACCTGGGAGACATTCTAAAGAAACATCTGAGGTGGTTAAAAG 6843405 Query 20265 CTTTGCCTAAAGTCATTCCATTTTACGCCGTTAAGGCCCA-GAACGACGAGAGAGTCCTC 20323 || | ||| | |||| || ||||| || || || | || | || | || | Sbjct 6843404 CTCTCCCTCATGTCACCCCCTTTTATGCAGTCAAATGTAATGATAGCAAAGCCA-TCGTG 6843346 Query 20324 AAGACCCTAGCTGCCCTTAAAACTGGCTTTGACTGTGCCAGTAAGCAGGAGATTCAGTTA 20383 |||||||| ||||| | || || ||||||||||| || ||| || || ||||| Sbjct 6843345 AAGACCCTTGCTGCTGTGGGGACAGGATTTGACTGTGCTAGCAAGACTGAAATACAGTTG 6843286 Query 20384 CTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCTTGTAAGCAGCCT 20443 |||| | |||| | || | |||| ||||| | | ||| ||||| ||||| || Sbjct 6843285 GTGCAGAGTCTGAGGGTGCCTCCAGAGAGGATTATCTATGCAAATCCATGTAAACAAGTA 6843226 Query 20444 TCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTTGATAGTGAAGAA 20503 || || | | |||||| ||| | | |||||| | |||||||||||||||||||| Sbjct 6843225 TCTCAAACTAAGTATGCTGCTAATAATGGAGTCCAGATGATGACTTTTGATAGTGAATTT 6843166 Query 20504 GAGCTTACCAAAATTGATCGCCTGCACCATGATGCTAAGCTGGTACTGAGGATTAAAGTG 20563 ||| | | ||| ||| | || | | || ||| |||| |||||||| Sbjct 6843165 GAGTTGATGAAAGTTGCCAGAGCACATCCAAAAGCAAAGTTGGTTTTGAGGATTGCCACT 6843106 Query 20564 GATGACTCTAACTCAGACAG-CATACTGAGTGTCAAGTTTGGGGCTCCTATTGAAGCCAG 20622 ||||| || || ||| | | ||| || ||||| || ||||| || | | | || Sbjct 6843105 GATGATTCCAAAGCAGTCTGTCAT-CTCAGTGTTAAATTTGGTGCCACGCTCAGAAATAG 6843047 Query 20623 CCAACGCCTGCTAAAACAGGCCAAAAAATTAGGCCTAGAAGTGATCGGAGTCAGCTTCCA 20682 | | ||| | || ||| ||| | | | || || |||| ||||||||||| Sbjct 6843046 CAGGCTCCTTTTGGAATGGGCAAAAGAGCTGAATATCGATGTCGTCGGTGTCAGCTTCCA 6842987 Query 20683 CGTGGGCAGTGGCTGCAAAGATGCACAGGCTTACAGAAAAGCCATAGCTGAGGCCAGGAG 20742 ||| || || ||||| | ||| | || | | | | || || |||| ||| | | Sbjct 6842986 CGTAGGAAGCGGCTGTACCGATACTGAGACCTTCGTGCAGGCAATCTCTGATGCCCGCTG 6842927 Query 20743 AGCTTTTGACTTTGGCACGCTGATGGGCTTTGACATGTACCTCTTGGATATTGGTGGCGG 20802 | ||||||| | || | | | || || |||||| || | |||||||| || || Sbjct 6842926 TGTTTTTGACATGGGGGCTAAGGTTGGTTTCAGCATGTATCTGCTTGATATTGGCGGTGG 6842867 Query 20803 CTTTCCCGGGATCAATGAGATTG---AGCCAACTTTTGAGGACATTGC-AGAAGTCATTA 20858 |||||| || ||| |||| || ||| | ||||| || || | || | | || | Sbjct 6842866 CTTTCCTGG-ATC--TGAGGATGTGAAGCTTAAATTTGAAGAGATCACCAGCA-TAATCA 6842811 Query 20859 ACGCGGCCT-TGGAAAGGCATTTTCCAGATGATGCCAACCTGACAATTATTGGTGAACCT 20917 || | | || |||| ||| ||| || | ||| ||| Sbjct 6842810 ACCCAGACTCTGGAG-------------------------TGAGAATCATAGCTGAGCCT 6842776 Query 20918 GGCAGGTACTACGCTACCTCGGCGCTAACTATAGCTGTAACTGTGATTGCTAA--AAAGT 20975 ||||| ||||| | | | || || | || | || || | | | || | || ||| | Sbjct 6842775 GGCAGATACTATGTTGCATCAGCTTTCACACTTGCGGTTAATATCATCTCCAAGAAAATT 6842716 Query 20976 GTGTTGAAG--ACA------CTCC-----TGGAGATAA---------AAAG---TTTATG 21010 || || ||| ||| ||| || |||| | | || |||||| Sbjct 6842715 GTATTAAAGGAACAGATTGGCTCTGATGATGAAGATGAGTCGACTGAACAGACCTTTATG 6842656 Query 21011 TATTATGTTAATGATGGCGTCTATGGCAGTTTTAACTGCATATTATTTAACCATGCTCGT 21070 |||||||| ||||||||||||||||| ||||| |||||| ||| | | ||||| | | Sbjct 6842655 TATTATGTGAATGATGGCGTCTATGGATCATTTAATTGCATACTATATGATCATGCACAT 6842596 Query 21071 CCTATGCCTATGCTGCTTAAAGAAAAACGC---CTTGAAGACAAAGACTATGTTTCTAGC 21127 | ||| | |||| |||| | || | || || || | ||| || ||| Sbjct 6842595 GTAAAGCCCCTTCTGC---AAGAGAGACCTAAACCAGATGAGAAGTATTATTCATCCAGC 6842539 Query 21128 ATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTGCCAGAG 21187 || ||||| || | || |||||| | ||| | ||||| |||| ||||| ||||| || Sbjct 6842538 ATATGGGGACCAACATGTGATGGCCTTGATCGGATTGTGGAGCGCTGTGACCTGCCCGAA 6842479 Query 21188 CTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTCAGCT-C 21246 | || ||||| || ||| | | |||||||||||||||||||||| || | ||| | Sbjct 6842478 ATGCATGTGGGTGATTGGATGCTCTTTGAAAACATGGGCGCTTACA-CTGTTGCTGCTGC 6842420 Query 21247 TTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGCACTATGTTATTTCAG 21296 || || || || ||||||| | ||| | | ||||||| || |||| Sbjct 6842419 CTCTACATTCAATGGCTTCCAGAGGCCGGTGATCTACTATGTGATGTCAG 6842370 >seq7904 Length=13651311 Score = 93.3 bits (102), Expect = 4e-14 Identities = 130/177 (73%), Gaps = 4/177 (2%) Strand=Plus/Plus Query 21122 TCTAGCATTTGGGGGCCTAGCTGCGATGGCTTAGATTGCATTGTTAAGCGGTGTGAACTG 21181 || ||||| ||||| || | || |||||| | ||| | |||||| |||| ||||| ||| Sbjct 3171083 TCCAGCATATGGGGACCAACATGTGATGGCCTTGATCGGATTGTTGAGCGCTGTGACCTG 3171142 Query 21182 CCAGAGCTTCAAGTGGGCGACTGGCTCATATTTGAAAACATGGGCGCTTACAGCTTGGTC 21241 || || | || ||||| || ||| | | |||||||||||||||||||||| || | Sbjct 3171143 CCCGAAATGCATGTGGGTGATTGGATGCTCTTTGAAAACATGGGCGCTTACA-CTGTTGC 3171201 Query 21242 AGCT-CTTCAACCTTTAACGGCTTCCCAAAGCCAGAAAAGC-ACTATGTTATTTCAG 21296 ||| | || || || || ||||| ||| || | || | | ||||||| || |||| Sbjct 3171202 TGCTGCCTCTACGTTCAATGGCTT-CCAGAGGCCGACGATCTACTATGTGATGTCAG 3171257 Score = 82.4 bits (90), Expect = 7e-11 Identities = 107/148 (72%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 20372 GAGATTCAGTTACTGCAAAATCTGGGAGTTCACGCAGACAGGATACTTTTTGCGAATCCT 20431 || || ||||| |||| | |||||| || | |||| ||||| | | ||| |||||| Sbjct 3168532 GAAATACAGTTGGTGCAGAGTCTGGGGGTGCCTCCAGAGAGGATTATCTATGCAAATCCT 3168591 Query 20432 TGTAAGCAGCCTTCGCATATAACGTATGCCGCTCAAACTGGAGTAAGGCTGATGACTTTT 20491 ||||| || || || || | |||||| ||| | | |||||| | ||||||||||| Sbjct 3168592 TGTAAACAAGTATCTCAAATTAAGTATGCTGCTAATAATGGAGTCCAGATGATGACTTTT 3168651 Query 20492 GATAGTGAAGAAGAGCTTACCAAAATTG 20519 |||||||||| ||| | | ||| ||| Sbjct 3168652 GATAGTGAAGTTGAGTTGATGAAAGTTG 3168679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 463469555344320