Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq5126 150 2e-31 seq7038 122 8e-23 seq2558 109 5e-19 seq6460 105 6e-18 seq11792 98.7 1e-15 seq11570 98.7 1e-15 seq11015 95.1 1e-14 seq3960 93.3 4e-14 seq4805 89.7 5e-13 seq10792 86.0 6e-12 seq12126 84.2 2e-11 seq6459 84.2 2e-11 seq4138 82.4 7e-11 >seq5126 Length=8658521 Score = 150 bits (166), Expect = 2e-31 Identities = 152/198 (77%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||||||||| || ||||| || || |||| | || || |||||||| || Sbjct 3006046 GGTGGACTCTTTCTGGATGTTGTAGTCAGACAGCGTGCGCCCATCTTCCAGCTGCTTTCC 3005987 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | || ||||||||| |||||||||||||||||||| ||||||| ||| Sbjct 3005986 AGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTTGGATCTTTGCCTT 3005927 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | |||||| ||||||| || |||| ||| | ||| ||||| ||||| || Sbjct 3005926 GACATTCTCGATGGTGTCGCTGGGCTCGACCTCGAGGGTAATGGTCTTGCCAGTCAGGGT 3005867 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 3005866 CTTCACGAAGATCTGCAT 3005849 Score = 149 bits (164), Expect = 6e-31 Identities = 154/199 (77%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| || || || ||| | || || |||||||| | Sbjct 3005818 GGTGGACTCCTTCTGGATGTTGTAGTCAGACAGGGTACGACCA-TCTTCCAGCTGCTTTC 3005760 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||||||||| ||||||||||| || ||||||| || Sbjct 3005759 CGGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTATCTTGGATCTTTGCCT 3005700 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| ||||| ||||||| || |||| ||||| ||| ||||| ||||||| Sbjct 3005699 TGACATTCTCAATGGTGTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGAG 3005640 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 3005639 TCTTCACGAAGATCTGCAT 3005621 Score = 147 bits (162), Expect = 2e-30 Identities = 153/198 (77%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| || |||||||| || ||| | | | || || ||||| || || Sbjct 3006273 GTGGACTCTTTCTGGATGTTGTAATCAGACAGGGTGCGTCCA-TCTTCCAGCTGTTTCCC 3006215 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | || ||||||||| |||||||||||||||||||| |||||| ||| Sbjct 3006214 AGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGAATCTTTGCCTT 3006155 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| |||||| ||||||| || |||| ||||| ||| ||||| ||||| || Sbjct 3006154 GACATTCTCAATGGTGTCGCTGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGGGT 3006095 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 3006094 CTTCACGAAGATCTGCAT 3006077 >seq7038 Length=1003649 Score = 122 bits (134), Expect = 8e-23 Identities = 148/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || ||||| || | ||| | | | || || |||||||||| Sbjct 394447 GGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 394505 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| |||||||||||| || ||||||||||| || ||| || || Sbjct 394506 CTGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGATTTTGGCCT 394565 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | ||||| |||||||||| || | ||||| ||| ||||||||||| | Sbjct 394566 TCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGG 394625 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 394626 TCTTCACGAAGATCTGCAT 394644 >seq2558 Length=10987700 Score = 109 bits (120), Expect = 5e-19 Identities = 148/201 (74%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 |||||||||||| || || ||||| || | ||| | | | || || ||||| |||| Sbjct 486454 GGTGGACTCTTTGTGGATGTTGTAGTCTGAGAGAGTGTGGCCA-TCTTCCAGCTGTTTGC 486396 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC- 133580 | || | || || ||||||||||| || ||||| || |||||||| ||| ||| || Sbjct 486395 CGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTC-TTGAATTTTGGCT 486337 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| | ||||| ||||| ||||||| || || | ||||| ||||||||| || || Sbjct 486336 TTGACGTTCTCAATAGTGTCACTGGGCTCGACCTCAAGGGTGATGGTTTTGCCCGTGAGG 486277 Query 133641 GTTTTTACGAAAATCTGCATG 133661 || ||| || ||||||||| Sbjct 486276 GTCTTTGTAAAGATCTGCATG 486256 >seq6460 Length=10151297 Score = 105 bits (116), Expect = 6e-18 Identities = 147/201 (73%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| || ||||| || | ||| | | | || || ||||| |||| Sbjct 3934094 GGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCA-TCTTCCAGCTGTTTGC 3934152 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTG-ATCTTTTGC 133580 | || | || || |||||||||| || ||||| || ||||||| | || || || | Sbjct 3934153 CGGCAAATATCAGATGCTGCTGGTCAGGTGGGATACCCTCCTTGT-GTTGAATTTTGTCT 3934211 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 ||| | ||||| ||||| ||||||| || || | ||||| ||||||||| || || Sbjct 3934212 TTGTCATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTTTTGCCCGTGAGG 3934271 Query 133641 GTTTTTACGAAAATCTGCATG 133661 || || || || ||||||||| Sbjct 3934272 GTCTTCACAAAGATCTGCATG 3934292 >seq11792 Length=7415672 Score = 98.7 bits (108), Expect = 1e-15 Identities = 145/203 (71%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| || || ||||| | ||| | | | ||||| | ||| |||| Sbjct 6703186 GGTGGACTCTTTCTGGATGTTATAATCTGAAAGAGTGTGGCCA-TCCTCCAACTGTTTGC 6703244 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 || | | || || |||||||||| || ||||||| |||||||| |||||| | Sbjct 6703245 CCACAAATATCAGATGCTGCTGGTCAGGTAGGATGCCCTCCTTGTCATGGATCTTGGCTT 6703304 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||| | ||||| |||||| || || | ||||| |||| | || || || | Sbjct 6703305 TGACATTTTCACCGGTGTCACTGGGCTGGACCTCAAAGGTGATGGTTCTTCCTGTGAGGG 6703364 Query 133642 TTTTTACGAAAATCTGCATGGCT 133664 | ||||| | ||||||||| || Sbjct 6703365 TCTTTACAGAGATCTGCATGTCT 6703387 >seq11570 Length=13276302 Score = 98.7 bits (108), Expect = 1e-15 Identities = 148/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 133458 TGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTG 133516 || |||||||||| ||| || || ||||| || | ||| | | | ||||| ||||| Sbjct 889455 TGCATGGTGGACTGTTTTTGGATGTTGTAGTCTGAGAGAGTGCGGCCA-TCCTCCAGCTG 889513 Query 133517 CTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTT 133576 |||||| || | || || |||||||||| || ||||| || |||||||| ||| || Sbjct 889514 CTTGCCAGCAAATATCAGATGCTGCTGGTCAGGTGGGATACCCTCCTTGTC-TTGAATTT 889572 Query 133577 TTGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | || |||| | |||| |||| ||||||| || || | ||||| ||| ||||| | Sbjct 889573 TGGCTTTGAAATTCTCAGTGGTGTAACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCCG 889632 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | || || || || || | |||||| Sbjct 889633 TGAGGGTCTTCACAAAGAGCTGCAT 889657 >seq11015 Length=12620302 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| || |||||||| || ||||| || | ||| | | | || || |||||| ||| Sbjct 5158830 GGTCGATTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCATGC 5158888 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| |||||||||||| |||||||||||| || ||| || || Sbjct 5158889 CTGCAAAGATGAGCCTCTGCTGGTCGGGGAAGATGCCTTCCTTATCCTGGATATTGGCCT 5158948 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | ||||| |||||||||| || | ||||| ||| ||| | ||||| | Sbjct 5158949 TCACATTTTCGATGGTGTCACTGGGCTCCACATCAAGGGTGATGGTCTTGTCAGTCAGGG 5159008 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| | | |||| Sbjct 5159009 TCTTCACGAAGACCAGCAT 5159027 >seq3960 Length=6554637 Score = 93.3 bits (102), Expect = 4e-14 Identities = 140/195 (72%), Gaps = 7/195 (4%) Strand=Plus/Plus Query 133465 TGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCCG 133524 ||||||||||||| || ||| | || | ||| || ||| ||||| ||||||| Sbjct 1989250 TGGACTCTTTCTGGATGTTGCAGTCTGAGAGAGTG--CG---GCTCCAGCTGTTTGCCCG 1989304 Query 133525 CGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG-CTTG 133583 | | || || |||||||||| | || ||||| |||||||| ||| ||| | |||| Sbjct 1989305 CAAATATCAGATGCTGCTGGTCAAGTGGAATGCCCTCCTTGTC-TTGAATTTTGGCCTTG 1989363 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | |||| ||||| ||||||| || |||| ||||| ||| ||||| || || || Sbjct 1989364 ACATTCTCAGTGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTC 1989423 Query 133644 TTTACGAAAATCTGC 133658 || || || |||||| Sbjct 1989424 TTCACAAAGATCTGC 1989438 >seq4805 Length=5228064 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| || || |||||||| || || || | | | || || || |||||||| Sbjct 4473609 GTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCA-TCTTCCAGTTGCTTGCC 4473551 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || || | ||||| || ||||| || |||||||| || |||||| ||| Sbjct 4473550 AGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTT 4473491 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||| || | ||| || || |||| ||||| ||| || || || || || Sbjct 4473490 TACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGT 4473431 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| |||||||||||||| Sbjct 4473430 TTTCACGAAAATCTGCAT 4473413 >seq10792 Length=8297812 Score = 86.0 bits (94), Expect = 6e-12 Identities = 142/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||| ||| || || || || | || | | | ||||| |||| |||| Sbjct 3779125 GGTGGACTCTTCCTGGATGTTCTAGTCTGAGAGACTGCGGCCA-TCCTCCGGCTGTTTGC 3779183 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC- 133580 |||| | || || | ||||||||| || ||||||| |||||||| ||| || || Sbjct 3779184 CCGCAAATATCAGACACTGCTGGTCAGGCAGGATGCCCTCCTTGTCTTGGAT-TTCGGCT 3779242 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| | |||| ||||| |||| |||||| || ||||| ||| ||||| | || Sbjct 3779243 TTGACATTCTCAGTGGTGTCAGTGGCCTCCACCTCAGGGGTGATGGTCTTGCCCATGAGG 3779302 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || || || |||||||| Sbjct 3779303 GTGTTCACAAAGATCTGCAT 3779322 >seq12126 Length=7615049 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| || || |||||||| || || || | | | || || || |||||||| Sbjct 7457944 GTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCA-TCTTCCAGTTGCTTGCC 7457886 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | | ||||| || ||||| || |||||||| || |||||| ||| Sbjct 7457885 AGCAAAGATCAATCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTT 7457826 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||| || | ||| || || |||| ||||| ||| || || || || || Sbjct 7457825 TACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGT 7457766 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| |||||||||||||| Sbjct 7457765 TTTCACGAAAATCTGCAT 7457748 >seq6459 Length=16685579 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| || || |||||||| || || || | | | || || || |||||||| Sbjct 968929 GTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCA-TCTTCCAGTTGCTTGCC 968871 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | | ||||| || ||||| || |||||||| || |||||| ||| Sbjct 968870 AGCAAAGATCAATCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTT 968811 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | || | ||| || | ||| || || |||| ||||| ||| || || || || || Sbjct 968810 TACATTTTCTATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGTCTTCCCCGTAAGGGT 968751 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| |||||||||||||| Sbjct 968750 TTTCACGAAAATCTGCAT 968733 >seq4138 Length=9750826 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/199 (70%), Gaps = 8/199 (4%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG--GACGAGTCCTCGAGCTGCTTG 133520 ||| ||| ||||||| || ||||| || | ||| ||| || || ||||||||| Sbjct 7362086 GGTCGACACTTTCTGGATTTTGTAGTCAGAAAGAGTGTGGACA--TCTTCCAGCTGCTTG 7362029 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC 133580 || ||| | ||||||| ||||||||| || ||||| |||| || || |||| || | Sbjct 7362028 CCTGCGAAGATGAGCCTCTGCTGGTCTGGGAGGATGTCTTCTTTATCCTGGATC-TTGGT 7361970 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 || | | |||| |||| || |||| || | ||||| ||| ||||| || ||| Sbjct 7361969 TTCACGTTTTCAATGCTGTCACTG---CCCACCTCCAGGGTGATGGTCTTGCCAGTGAGA 7361913 Query 133641 GTTTTTACGAAAATCTGCA 133659 || || || || ||||||| Sbjct 7361912 GTCTTCACAAAGATCTGCA 7361894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483341494817760