Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq4871 219 5e-52 seq12903 199 5e-46 seq6437 138 1e-27 >seq4871 Length=5485048 Score = 219 bits (242), Expect = 5e-52 Identities = 606/921 (66%), Gaps = 11/921 (1%) Strand=Plus/Plus Query 162067 TTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCTCATCGAAC 162126 ||||| | | || ||| || | |||||||| || || | ||| ||| | || ||| Sbjct 1009827 TTATGCCTCAAATGCTCATCCAAACACTGGATGGCAAAGAGGTCAACATCCACGTCAAAC 1009886 Query 162127 TTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGATCCGAAC 162186 || || || |||| ||| || ||| || ||||| || | || || | ||| || Sbjct 1009887 TTATTGGCAAACAAGTGGTG---GTTGCGCAGCATCCAGTTCAAGTCACCAGCTCCAAAA 1009943 Query 162187 ACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCGTCCACA 162246 | |||||| || |||||||| || || ||| || || ||| |||| || | | ||| Sbjct 1009944 ATGCACACCGAGCGCACGTGGACCCCATCGCAGGGAGGGTACGGGGCACCCTTGGAAACA 1010003 Query 162247 TCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAGGTGTCG 162306 || ||||| ||||||||||||| || ||||| | | || |||||||| || ||| Sbjct 1010004 TCACCCTCAAAGTATTGCCACTTGACAAACCTGGCAACTGCTTGCATGTCAGACAAATCG 1010063 Query 162307 TACTTGTACACTGACGGCACG-GCTCCAGGAACACCCGGCAGTCTCTGTAGAGTAGCCCA 162365 ||||| | ||| | | | | | || || || | || | ||||| | || ||||| Sbjct 1010064 TACTTATGG-CTGGCAGAAAGTGAGCCCGGGACTTCAGGAATCCTCTGGATGGTGGCCCA 1010122 Query 162366 CAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGACCGTTTT 162425 || | || || || || || || || | || ||||||||| |||| || ||| Sbjct 1010123 GAGATACTCATCAGGGCTGTATGTGTCTTGCGCCCACTCCATAAACTTTTGGAGTTTTTC 1010182 Query 162426 ATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTACCAGAAAA 162485 || | ||| | || || || ||| | || | |||||| || || |||||||| Sbjct 1010183 ATTCTGTAGTACATACCCCACATACTCCCTACTGACCACAAAGTAGGCACTGCCAGAAAA 1010242 Query 162486 CACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCATTCCCTC 162545 | ||| | | ||||| || |||| | || ||||| | | |||| | Sbjct 1010243 AAGAGGTGTTTCGAGCGGAGGAAGCATTTTGACAGTCCCTGTGTTTGTCAGCTTTCCATT 1010302 Query 162546 TACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTA-GACGGGTGTTCGGTCT 162604 | |||| | | | ||| ||||||| | |||| ||| | | | || || | Sbjct 1010303 AATGACCTCATACCGCTTTTTCCACCTTTCT-TCTTTATGGGATGGCATCCTCTCCGTTT 1010361 Query 162605 CTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAA 162664 | || ||||| ||| || |||||||| | || || ||||| ||||| |||| Sbjct 1010362 CCAGGCTGTTTTCTCCCATTAACAACTTCAGCTTCCTGACAATTTCTAGGTTGGTTTTAA 1010421 Query 162665 GGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTCCGTACA 162724 ||||| || | || || ||||| || | || ||||| || | || | | | || | Sbjct 1010422 TAGGAAAATCCATACCACAAAGATTTATCAAGTACTTCCAGTTTGCACTCATTGCATAGA 1010481 Query 162725 GATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCT 162784 | |||| | ||||| || || ||||| || || |||||||| || || || || |||| Sbjct 1010482 GGTCCTTCATGCAGTTAAGGTCAGCCTGAACCCGGCTCCACGATGCATAAACCACACTCT 1010541 Query 162785 CCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGTG 162844 |||| | |||| ||||||||||| |||||| ||| | || || |||| || | Sbjct 1010542 CCAATCGGCTGGCCACAAAGACATTACTGAAACAGGAAGCGATGCCTGTCACTGCAGCTA 1010601 Query 162845 AGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTA 162902 | | ||| || | ||| | || || || | ||| || | ||||||||| || Sbjct 1010602 AATAGGAATC--CTCGGATTTTGTGTCCACATGAATGCAATAGAAATTCTGAGGCATATA 1010659 Query 162903 GATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGC 162962 |||||||||||| | || || | ||| || ||||| || || ||||| |||||||| || Sbjct 1010660 GATGGCCCTCAGCAGCCTGTCAAGCATTTCAATCTTGTGATGAACCACTATAGAATATGC 1010719 Query 162963 TATGGGGAACTCAGCCTCCTC 162983 ||| || ||||| ||||| || Sbjct 1010720 TATTGGAAACTCTGCCTCTTC 1010740 >seq12903 Length=10971483 Score = 199 bits (220), Expect = 5e-46 Identities = 239/325 (74%), Gaps = 0/325 (0%) Strand=Plus/Minus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 |||||| || || |||| | || || || || || || ||||||||||| || | || Sbjct 5622441 CATAGACAGTGAGGCAGGCTGTTCCTGAGATCTTCCCAGAACCAAAAGTATTGAAGAGAC 5622382 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 |||| |||| ||||| ||||||| |||| | ||||| || || | || || ||| || Sbjct 5622381 ACATGTAACACCCTTCATCCTCCAGGGTGATATTCCAGAAGGTGATGGTTGAGTTTTGGA 5622322 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || || |||||||| | | |||||| || | |||||||| || || || || | Sbjct 5622321 GTCCCAGCTGGGTAATGTTTATCTTGTCCTTATAGGCAGGCTGGATCACCACTCCATGGT 5622262 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 |||||||||| ||| |||||||||| ||||| ||| || | |||||||| || || | Sbjct 5622261 TCTCGCTGAAGGTGACCATGTTTTCTGGGCTTACAGCTTTCTTTTTCTGCCATGTCACAA 5622202 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | | ||||| | | | |||| |||||||||||||| |||||||| |||| || | Sbjct 5622201 TCAGGACTTCCTGGGCATTTTGCAGAGAGCATCTTAAGGAAGCAGGAGTGTACAGCTGCT 5622142 Query 172071 CCCTTTCGTCTTGCGTTACCACCTG 172095 | ||||| || || || | ||| || Sbjct 5622141 CTCTTTCATCCTGGGTCAGCACTTG 5622117 Score = 116 bits (128), Expect = 4e-21 Identities = 162/224 (72%), Gaps = 5/224 (2%) Strand=Plus/Minus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 || ||||| || | ||| || || ||||||| ||| | || | ||| |||||||||| Sbjct 5624987 ACGGTTTGCCTAAAGTCAGTCACGGTCCCCAGGTGCAGCACCTGGCAGATCACCTCCT-- 5624930 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 | ||||| ||| | ||||| ||||| || || || ||||| |||||||| || || || Sbjct 5624929 -TCCCCACCTGATTCTTAGGGTCTTTGACCTGGAGGATGCTGGTAACAGACGTGGTTCCA 5624871 Query 171623 TTACGATGTAGAACG-GTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAA 171681 || | || ||| | || ||||||||||| || || || | | || ||||| || Sbjct 5624870 TTTGGGTG-AGACAGAGTCACTGTACTATTTTCAATCCCTGACCGAGGGACCTTCCAGAA 5624812 Query 171682 TATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTA 171725 || | || ||||| | ||||| ||||||||||| ||||||| Sbjct 5624811 GATCATGGGGGCTGGGCGGGCAGTGGCAGAGCAAGTGATGTTTA 5624768 >seq6437 Length=3083028 Score = 138 bits (152), Expect = 1e-27 Identities = 399/606 (66%), Gaps = 15/606 (2%) Strand=Plus/Plus Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946 ||||||||||||| ||| || | | |||||| |||| | || || | | | Sbjct 2031433 TCCAGTTAAAGTAACTAAGGTACAACTTATTGTTTTTGTCGACTTCCTTCAGATACTTTG 2031492 Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006 | || || | || || | || || | ||| |||||||| | ||| | || | ||||| Sbjct 2031493 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATGTAAT 2031552 Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066 | || || || || || |||| ||| || || | ||||| | || |||| || || Sbjct 2031553 TCTCATAGTTTTCCCTAGATGGTCCCAGAACAACAGGTACAGAGCCAGCCAGAAAAGCAT 2031612 Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126 |||||| ||||| || || || ||| |||| | || || ||||| | ||||| |||| Sbjct 2031613 TGTAGAGCTTTTCCGTGATGTAATCCTTGTGGATTGAATTTTCAAAGGAAAGATAAAATT 2031672 Query 177127 TACAGGAAGATA--GTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184 |||| | ||||| ||| || || || | | ||| | ||| ||||| | | | | Sbjct 2031673 TACAAGTAGATATGGTA--GGAATCAAATTTTTATCATTGACATATTCTCCAAATGCTTG 2031730 Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGATCTCACGTG 177244 ||| || ||| || || ||| || || ||||| ||| ||| | || | || Sbjct 2031731 CCCATAGGTATGGATTTCAATGCTCTTGCTTAGCTCATTGTAATATTTGACCCTGGCATG 2031790 Query 177245 GTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGAT 177303 || |||||| || || || |||||||| || ||||| |||||||| || || | Sbjct 2031791 CTCAGGGTTCCAGTTACTCACAACCCAGCACACCAACTT-CTCTTTGCTTGGCAC----T 2031845 Query 177304 TC-GATACTAATGCAGTGTCTCTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGAG 177362 || | || || | | | || | ||| | | ||||| ||||| || ||||||||| Sbjct 2031846 TCAAACACGAAGGGATTTGTGCTCACCGTCAAGAAGCCATAAGGCACTTGGATATCCGAG 2031905 Query 177363 TCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATAC--CTTGTTTGAAGGGGC 177420 || || | || || | || || || || | || || || | || |||| ||| Sbjct 2031906 TCACGGCGATAAGTCAGAGTCAGGTTAAACAAGTGCTCAATGCCACTCTTTTG--GGGAG 2031963 Query 177421 TGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCCG 177480 ||| | | || ||||| || |||||||| ||||| || || |||| ||| || | || | Sbjct 2031964 TGTGAGTTGGTGATTCCAAATTCATCCAAATCCATTTCTGGAAGGGTGGCCTAGCTTGCT 2032023 Query 177481 TAGGTA 177486 ||||| Sbjct 2032024 GAGGTA 2032029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578337108230400