Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq5126 120 2e-22 seq6460 116 2e-21 seq2558 111 1e-19 seq6583 84.2 1e-11 >seq5126 Length=8658521 Score = 120 bits (132), Expect = 2e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 |||| || ||||| || | ||||| || |||||| |||||| || ||||||||||| | Sbjct 3006305 CACCCCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAATCAG 3006246 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | || |||||| | || |||| ||||| || ||||| ||||| | |||||| || | | Sbjct 3006245 ACAGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAG 3006186 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | ||||| ||||| ||| || || | |||| || | ||||||||| | || Sbjct 3006185 GGATGCCTTCCTTGTCCTGAATCTT-TGCCTTGACATTCTCAATGGTGTCGCTGGGCTCG 3006127 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||| || || || || | || || || ||||||||||| Sbjct 3006126 ACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 3006077 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 |||||||| | || | ||||| || | ||| |||||| || |||||||| || || Sbjct 3006075 CCACCTCTGAGGCGGAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 3006016 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || ||||| ||||| ||||| | |||||| || | || Sbjct 3006015 AGCGTGCGCCCATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGG 3005956 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| || || || | |||| || | ||||||||| | || || Sbjct 3005955 ATGCCTTCCTTGTCTTGGATCTT-TGCCTTGACATTCTCGATGGTGTCGCTGGGCTCGAC 3005897 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | || || || || || || | || || || ||||||||||| Sbjct 3005896 CTCGAGGGTAATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 3005849 >seq6460 Length=10151297 Score = 116 bits (128), Expect = 2e-21 Identities = 155/213 (73%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597 ||||||| || || ||| |||||| || |||||||| || ||||| ||||| | || Sbjct 3934080 AACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCT 3934139 Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCG 33657 |||| ||||| |||||||| |||| | ||||||| || | || | ||| || |||| Sbjct 3934140 TCCAGCTGTTTGCCGGCAAATATCAGATGCTGCTGGTCAGGTGGGATACCCTCCTTGTGT 3934199 Query 33658 GCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGT 33716 |||||| | ||| ||| ||| |||||| || | || || |||| ||||| || Sbjct 3934200 TGAATTTTGTCTTTGT-CATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGT 3934258 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| || || | || || |||||||||||||| Sbjct 3934259 TTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 3934291 >seq2558 Length=10987700 Score = 111 bits (122), Expect = 1e-19 Identities = 169/237 (71%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| || | ||||||| || | ||| |||||| || |||||||| || ||| Sbjct 486483 CCACCTCGCAGGGGCAACACCAGGTGCGGGGTGGACTCTTTGTGGATGTTGTAGTCTGAG 486424 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||| | | || |||| ||||| |||||||| |||| ||||||||| || | || Sbjct 486423 AGAGTGTGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGG 486364 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCAC 33701 | ||| || ||||| |||||| ||| | | | ||| ||||| || | || || Sbjct 486363 ATACCCTCCTTGTCTTGAATTTTGGCTTTGA-CGTTCTCAATAGTGTCACTGGGCTCGAC 486305 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGGTGT 33758 |||| ||||| ||||| || || | || ||| |||||||||||| ||| |||| Sbjct 486304 CTCAAGGGTGATGGTTTTGCCCGTGAGGGTCTTTGTAAAGATCTGCAT-GTTTGTGT 486249 >seq6583 Length=2948085 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| || || | || || || || ||| |||||| |||| ||| || ||| Sbjct 72612 CCACCTCGCAGGCGCAGCATCAGGTGCAGGGTGGACTCTTTCCAGATGTCGTAGTCTGAG 72671 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || ||| ||||| ||||||| |||| | ||||||| || | || Sbjct 72672 AGAGTTCGGCCATCCCCCAGCTGTTTGCCGGCAAGTATCAGATGCTGCTGGTCAGGTGGG 72731 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||| || ||||| |||||| ||| | ||| ||| |||||| || | | || Sbjct 72732 ATACCCTCCTTGTCTTGAATTTTGGCTTTGA-CATCCTCATTGGTGTCACTGGGCTTGAC 72790 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || | || || |||||||||||||| Sbjct 72791 CTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTCACAAAGATCTGCAT 72838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328651424206080