Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201
5-03-12] 13,124 sequences; 2,970,124,662 total letters
Query= NC_025257.1
Length=102759
Score E
Sequences producing significant alignments: (Bits) Value
seq5126 120 2e-22
seq6460 116 2e-21
seq2558 111 1e-19
seq6583 84.2 1e-11
>seq5126
Length=8658521
Score = 120 bits (132), Expect = 2e-22
Identities = 166/230 (72%), Gaps = 2/230 (1%)
Strand=Plus/Minus
Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580
|||| || ||||| || | ||||| || |||||| |||||| || ||||||||||| |
Sbjct 3006305 CACCCCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAATCAG 3006246
Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640
| || |||||| | || |||| ||||| || ||||| ||||| | |||||| || | |
Sbjct 3006245 ACAGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAG 3006186
Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699
| | ||||| ||||| ||| || || | |||| || | ||||||||| | ||
Sbjct 3006185 GGATGCCTTCCTTGTCCTGAATCTT-TGCCTTGACATTCTCAATGGTGTCGCTGGGCTCG 3006127
Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| || | ||||| || || || || | || || || |||||||||||
Sbjct 3006126 ACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 3006077
Score = 89.7 bits (98), Expect = 3e-13
Identities = 158/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
|||||||| | || | ||||| || | ||| |||||| || |||||||| || ||
Sbjct 3006075 CCACCTCTGAGGCGGAGCACCAGGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 3006016
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| ||||| | || |||| || ||||| ||||| ||||| | |||||| || | ||
Sbjct 3006015 AGCGTGCGCCCATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGG 3005956
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701
| ||||| ||||| || || || | |||| || | ||||||||| | || ||
Sbjct 3005955 ATGCCTTCCTTGTCTTGGATCTT-TGCCTTGACATTCTCGATGGTGTCGCTGGGCTCGAC 3005897
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|| | || || || || || || | || || || |||||||||||
Sbjct 3005896 CTCGAGGGTAATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 3005849
>seq6460
Length=10151297
Score = 116 bits (128), Expect = 2e-21
Identities = 155/213 (73%), Gaps = 2/213 (1%)
Strand=Plus/Plus
Query 33538 AACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCG 33597
||||||| || || ||| |||||| || |||||||| || ||||| ||||| | ||
Sbjct 3934080 AACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCT 3934139
Query 33598 TCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCG 33657
|||| ||||| |||||||| |||| | ||||||| || | || | ||| || ||||
Sbjct 3934140 TCCAGCTGTTTGCCGGCAAATATCAGATGCTGCTGGTCAGGTGGGATACCCTCCTTGTGT 3934199
Query 33658 GCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGT 33716
|||||| | ||| ||| ||| |||||| || | || || |||| ||||| ||
Sbjct 3934200 TGAATTTTGTCTTTGT-CATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGT 3934258
Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
||| || || | || || ||||||||||||||
Sbjct 3934259 TTTGCCCGTGAGGGTCTTCACAAAGATCTGCAT 3934291
>seq2558
Length=10987700
Score = 111 bits (122), Expect = 1e-19
Identities = 169/237 (71%), Gaps = 3/237 (1%)
Strand=Plus/Minus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||||| || | ||||||| || | ||| |||||| || |||||||| || |||
Sbjct 486483 CCACCTCGCAGGGGCAACACCAGGTGCGGGGTGGACTCTTTGTGGATGTTGTAGTCTGAG 486424
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| ||| | | || |||| ||||| |||||||| |||| ||||||||| || | ||
Sbjct 486423 AGAGTGTGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGG 486364
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCAC 33701
| ||| || ||||| |||||| ||| | | | ||| ||||| || | || ||
Sbjct 486363 ATACCCTCCTTGTCTTGAATTTTGGCTTTGA-CGTTCTCAATAGTGTCACTGGGCTCGAC 486305
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTGGTGT 33758
|||| ||||| ||||| || || | || ||| |||||||||||| ||| ||||
Sbjct 486304 CTCAAGGGTGATGGTTTTGCCCGTGAGGGTCTTTGTAAAGATCTGCAT-GTTTGTGT 486249
>seq6583
Length=2948085
Score = 84.2 bits (92), Expect = 1e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582
||||||| || || | || || || || ||| |||||| |||| ||| || |||
Sbjct 72612 CCACCTCGCAGGCGCAGCATCAGGTGCAGGGTGGACTCTTTCCAGATGTCGTAGTCTGAG 72671
Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642
|| || || | || ||| ||||| ||||||| |||| | ||||||| || | ||
Sbjct 72672 AGAGTTCGGCCATCCCCCAGCTGTTTGCCGGCAAGTATCAGATGCTGCTGGTCAGGTGGG 72731
Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701
| ||| || ||||| |||||| ||| | ||| ||| |||||| || | | ||
Sbjct 72732 ATACCCTCCTTGTCTTGAATTTTGGCTTTGA-CATCCTCATTGGTGTCACTGGGCTTGAC 72790
Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749
|||| ||||| || || || || | || || ||||||||||||||
Sbjct 72791 CTCAAGAGTGATGGTCTTGCCCGTAAGGGTCTTCACAAAGATCTGCAT 72838
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 328651424206080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |