Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq4649 107 6e-20 seq9126 98.7 3e-17 seq8793 98.7 3e-17 seq5126 98.7 3e-17 seq3335 98.7 3e-17 seq11792 93.3 1e-15 seq6093 84.2 7e-13 >seq4649 Length=3067355 Score = 107 bits (118), Expect = 6e-20 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1289004 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 1289063 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 1289064 TCCCGGGTTTCGGC 1289077 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 1109847 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1109906 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1109907 CCGGGTTTCGGC 1109918 Score = 96.9 bits (106), Expect = 1e-16 Identities = 66/73 (90%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATC-TAAAGGTCCCTGGTTCAAC 2827 || ||| |||||||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 1273125 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTTAAAGGTCCCTGGTTCAAT 1273184 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 1273185 CCCGGGTTTCGGC 1273197 Score = 87.8 bits (96), Expect = 6e-14 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| ||| |||||||||||||| |||||||||||||||||||| |||| |||||| | Sbjct 1318039 GCCGAAATAGTTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGGCCCTAGTTCAATC 1318098 Query 2829 CCGGGCTT 2836 ||||| || Sbjct 1318099 CCGGGTTT 1318106 Score = 82.4 bits (90), Expect = 2e-12 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 |||| |||| |||||||||||||||||| |||||||||| ||||| ||| |||||||| Sbjct 2386882 ATGGTTGAAATAGCTCAGTTGGGAGAGCTTTAGACTGAATATCTACAGGCTTCTGGTTCA 2386823 Query 2826 ACCCCGGGCTTCAGC 2840 | || ||| ||| || Sbjct 2386822 ATCCTGGGTTTCGGC 2386808 >seq9126 Length=3598047 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 1248894 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1248835 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1248834 CCGGGTTTCGGC 1248823 >seq8793 Length=9245426 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 7927359 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 7927300 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 7927299 CCGGGTTTCGGC 7927288 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 7936326 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 7936267 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 7936266 CCGGGTTTCGGC 7936255 >seq5126 Length=8658521 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 2991397 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 2991456 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 2991457 CCGGGTTTCGGC 2991468 >seq3335 Length=24277319 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 5018697 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 5018638 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 5018637 CCGGGTTTCGGC 5018626 >seq11792 Length=7415672 Score = 93.3 bits (102), Expect = 1e-15 Identities = 59/64 (92%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832 || |||||||||||||||||| |||||||||||||||||||||||||||||| | ||||| Sbjct 3347542 AAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCGG 3347601 Query 2833 GCTT 2836 | || Sbjct 3347602 GTTT 3347605 >seq6093 Length=2997672 Score = 84.2 bits (92), Expect = 7e-13 Identities = 49/51 (96%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTT 2823 ||||||||||||||||||| | ||||||||||||||||||||||||||||| Sbjct 135043 AAGTAGCTCAGTTGGGAGAACGTTAGACTGAAGATCTAAAGGTCCCTGGTT 135093 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15847324888980