Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201
5-03-12] 13,124 sequences; 2,970,124,662 total letters
Query= NC_026141.2
Length=4988
Score E
Sequences producing significant alignments: (Bits) Value
seq4649 107 6e-20
seq9126 98.7 3e-17
seq8793 98.7 3e-17
seq5126 98.7 3e-17
seq3335 98.7 3e-17
seq11792 93.3 1e-15
seq6093 84.2 7e-13
>seq4649
Length=3067355
Score = 107 bits (118), Expect = 6e-20
Identities = 68/74 (92%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826
|||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1289004 TGGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 1289063
Query 2827 CCCCGGGCTTCAGC 2840
|||||| ||| ||
Sbjct 1289064 TCCCGGGTTTCGGC 1289077
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 1109847 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1109906
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 1109907 CCGGGTTTCGGC 1109918
Score = 96.9 bits (106), Expect = 1e-16
Identities = 66/73 (90%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATC-TAAAGGTCCCTGGTTCAAC 2827
|| ||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1273125 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTTAAAGGTCCCTGGTTCAAT 1273184
Query 2828 CCCGGGCTTCAGC 2840
|||||| ||| ||
Sbjct 1273185 CCCGGGTTTCGGC 1273197
Score = 87.8 bits (96), Expect = 6e-14
Identities = 60/68 (88%), Gaps = 0/68 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| ||| |||||||||||||| |||||||||||||||||||| |||| |||||| |
Sbjct 1318039 GCCGAAATAGTTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGGCCCTAGTTCAATC 1318098
Query 2829 CCGGGCTT 2836
||||| ||
Sbjct 1318099 CCGGGTTT 1318106
Score = 82.4 bits (90), Expect = 2e-12
Identities = 63/75 (84%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825
|||| |||| |||||||||||||||||| |||||||||| ||||| ||| ||||||||
Sbjct 2386882 ATGGTTGAAATAGCTCAGTTGGGAGAGCTTTAGACTGAATATCTACAGGCTTCTGGTTCA 2386823
Query 2826 ACCCCGGGCTTCAGC 2840
| || ||| ||| ||
Sbjct 2386822 ATCCTGGGTTTCGGC 2386808
>seq9126
Length=3598047
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 1248894 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 1248835
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 1248834 CCGGGTTTCGGC 1248823
>seq8793
Length=9245426
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 7927359 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 7927300
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 7927299 CCGGGTTTCGGC 7927288
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 7936326 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 7936267
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 7936266 CCGGGTTTCGGC 7936255
>seq5126
Length=8658521
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 2991397 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 2991456
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 2991457 CCGGGTTTCGGC 2991468
>seq3335
Length=24277319
Score = 98.7 bits (108), Expect = 3e-17
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828
|| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | |
Sbjct 5018697 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 5018638
Query 2829 CCGGGCTTCAGC 2840
||||| ||| ||
Sbjct 5018637 CCGGGTTTCGGC 5018626
>seq11792
Length=7415672
Score = 93.3 bits (102), Expect = 1e-15
Identities = 59/64 (92%), Gaps = 0/64 (0%)
Strand=Plus/Plus
Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGG 2832
|| |||||||||||||||||| |||||||||||||||||||||||||||||| | |||||
Sbjct 3347542 AAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCGG 3347601
Query 2833 GCTT 2836
| ||
Sbjct 3347602 GTTT 3347605
>seq6093
Length=2997672
Score = 84.2 bits (92), Expect = 7e-13
Identities = 49/51 (96%), Gaps = 0/51 (0%)
Strand=Plus/Plus
Query 2773 AAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTT 2823
||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 135043 AAGTAGCTCAGTTGGGAGAACGTTAGACTGAAGATCTAAAGGTCCCTGGTT 135093
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 15847324888980
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |