Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201
5-03-12] 13,124 sequences; 2,970,124,662 total letters
Query= NC_026421.1
Length=182380
Score E
Sequences producing significant alignments: (Bits) Value
seq12903 266 4e-66
seq6472 210 3e-49
seq3 156 5e-33
seq7015 149 7e-31
seq5838 104 3e-17
>seq12903
Length=10971483
Score = 266 bits (294), Expect = 4e-66
Identities = 249/317 (79%), Gaps = 0/317 (0%)
Strand=Plus/Plus
Query 171069 CAGGTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCC 171128
|| ||| ||||||||||||| || | || |||| |||| || || ||| | | ||||||
Sbjct 5622117 CAAGTGCTGACCCAGGATGAAAGAGAGCAGCTGTACACTCCTGCTTCCTTAAGATGCTCT 5622176
Query 171129 CTGCAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCA 171188
||||| | | | ||||| || |||||||| || |||||||||| || | | |||
Sbjct 5622177 CTGCAAAATGCCCAGGAAGTCCTGATTGTGACATGGCAGAAAAAGAAAGCTGTAAGCCCA 5622236
Query 171189 GAGAACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGAC 171248
|| |||||| | || || ||| | |||| || |||||| ||||||| || |||||||||
Sbjct 5622237 GAAAACATGGTCACCTTCAGCGAGAACCATGGAGTGGTGATCCAGCCTGCCTATAAGGAC 5622296
Query 171249 AAGATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACC 171308
||||||||||| |||||||| ||||||||||||||||||||||| || ||||||| ||||
Sbjct 5622297 AAGATAAACATTACCCAGCTGGGACTCCAAAACTCAACCATCACCTTCTGGAATATCACC 5622356
Query 171309 TTAGAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCG 171368
| ||||| || ||||| |||| || ||||| || || ||||| |||||||| |||||
Sbjct 5622357 CTGGAGGATGAAGGGTGTTACATGTGTCTCTTCAATACTTTTGGTTCTGGGAAGATCTCA 5622416
Query 171369 GGGGTGGCCTGCCTCAC 171385
|| |||||||||||
Sbjct 5622417 GGAACAGCCTGCCTCAC 5622433
>seq6472
Length=2227648
Score = 210 bits (232), Expect = 3e-49
Identities = 244/327 (75%), Gaps = 4/327 (1%)
Strand=Plus/Minus
Query 146771 CCTAAACCGCCAGCGCCATGGGGATGGAGGGGTGCGGGTGGTAGCCCTCGAGGGCAAAAT 146830
||||||| |||| |||| || | || ||||| | ||| || || | ||| |
Sbjct 2220131 CCTAAACAGCCATTTCCATTTTAATAGTTGGATGCGGATTGTACCCTTCAATCTGAAAGT 2220072
Query 146831 CTTCTGCCCTGAAATCGTCTATGTCCTCCACCCGCCTCAAAATCTTGAGCTTGGGGAAGG 146890
|||| || |||| || || || | ||| || | | |||||||||||| ||||| |
Sbjct 2220071 CTTCAGCTTTGAAGTCATCAATTTTCTCAACTTTTCGAAGAATCTTGAGCTTTGGGAAAG 2220012
Query 146891 GTCGGGGGTTCCTGGCC--AGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTG 146948
||| ||| | || || |||||||||||||| ||||| | ||| || ||||| | ||
Sbjct 2220011 GTCTGGGTT--CTCGCTGAAGCTGAATTTTCAGTGGCTCGATGTGATTCAGGTAAATATG 2219954
Query 146949 CGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCAT 147008
|| || |||| ||||| |||||||| || ||||| ||||| || | ||| || | |||
Sbjct 2219953 TGCATCTCCCAAAGTGTGTACAAAGTCACCTGGCTTCAGGCCCGTGATGTGCGCAATCAT 2219894
Query 147009 GTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGA 147068
||| |||||||| | ||||||||| |||||||| || || || ||||||||||| |||||
Sbjct 2219893 GTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGCACGCCTAGGCCCATGTCTCCCGA 2219834
Query 147069 CCTCTGGTACAGCTGGCACGAGAGCTC 147095
||||||||||||||||| || |||||
Sbjct 2219833 TCTCTGGTACAGCTGGCAGGACAGCTC 2219807
>seq3
Length=9913731
Score = 156 bits (172), Expect = 5e-33
Identities = 135/170 (79%), Gaps = 12/170 (7%)
Strand=Plus/Minus
Query 178228 TTAAGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGG 178287
|| |||||||| |||||||||| |||||||| |||||||| ||||||||| |||||||||
Sbjct 3751758 TTTAGGGTTACCTGGGTTGCCAAGCCTTGTCTGAGATGATCCAGTTTTACCTGGAGGAGG 3751699
Query 178288 TGATGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAA 178347
||||||| || || ||||| ||| | ||| ||||| |||||||| || |
Sbjct 3751698 TGATGCCCCAAGCTGAGAACCAC------------GACCCAGACATCAAGGAGCACGTGA 3751651
Query 178348 ACTCTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397
|||| |||||||| || || |||||||| || ||||||||||||| |||
Sbjct 3751650 ACTCCCTGGGGGAGAATCTGAAGACCCTCAGGCTGAGGCTGCGGCGCTGT 3751601
Score = 96.9 bits (106), Expect = 4e-15
Identities = 73/86 (85%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521
|||| ||||| || || || |||||||| |||||||||||||| || || || |||||||
Sbjct 3749391 AGCTCCAAGAGAAAGGCGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 3749332
Query 178522 TAGAAGCTTACATGACAACAAAAATG 178547
||||||| |||||||||| ||||||
Sbjct 3749331 TAGAAGCCTACATGACAATGAAAATG 3749306
>seq7015
Length=9623085
Score = 149 bits (164), Expect = 7e-31
Identities = 132/165 (80%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041
||| ||||| || | ||| || | |||||| ||||| || | ||||||||| ||||||||
Sbjct 2250483 CTTCAGGCCCGTGATGTGCGCAATCATGTACGTGAGTAGGGCGTAGCTGGCGATGTTGAA 2250424
Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101
|| || || ||||||||||| ||||| ||||||||||||||||| || ||||| | ||
Sbjct 2250423 AGGCACGCCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTT 2250364
Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146
|||| || |||||||| ||| |||||| || ||||| |||||
Sbjct 2250363 CACCACATAGAACTGGCAGAGGGCGTGGCATGGAGGCAGTGCCAT 2250319
Score = 96.9 bits (106), Expect = 4e-15
Identities = 118/161 (73%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 147282 GGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTG 147341
||||||||| ||||||||||||||||| || ||||| |||| ||| || | ||||
Sbjct 2246314 GGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGACCCAAGTCCCCTTCTTCTCTGGT 2246255
Query 147342 CGAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCC 147401
||||| ||| | | | ||| || |||| || | ||| |||||||| ||||||
Sbjct 2246254 GGAGAACCCCAGGCTGTCCAAAAAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCC 2246195
Query 147402 CTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGA 147442
||||| || |||||||||| | ||||| ||| ||| ||
Sbjct 2246194 CTTGGAAGACAGCTCCTTAGCATTTGTGGATCCCTGGAAGA 2246154
>seq5838
Length=3156588
Score = 104 bits (114), Expect = 3e-17
Identities = 200/294 (68%), Gaps = 6/294 (2%)
Strand=Plus/Plus
Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669
||| || |||||||| | || || | ||||| | ||||| | | |||||||
Sbjct 2731439 GTATTCCCTGGTGTTCACTGTGGGCCTCTTGGGCAACGTGGTGGTGGTGATGATCCTCAT 2731498
Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729
||| |||| ||||||| | || ||||||||||||| |||| ||||||||||| || ||
Sbjct 2731499 AAAATACAGGAGGCTCCGAATTATGACCAACATCTACCTGCTCAACCTGGCCATTTCGGA 2731558
Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789
|||||| | | |||||||| || || ||||| |||| || ||| | | |
Sbjct 2731559 CCTGCTCTTCCTCTTCACCCTTCCGTTCTGGATCCACT--ATGTCAGGGAGCA----TAA 2731612
Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849
|||| | || ||| ||||||||||| | | ||| ||| || | ||||
Sbjct 2731613 CTGGGTCTTCGGCCATGACATGTGTAAGCTCCTCTCGGGGTTTTATTACACAGGCTTGTA 2731672
Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGT 8903
|||||| || | || || ||||| |||| | |||||||| || || ||||
Sbjct 2731673 CAGCGAGATCTTTTTCATAATCCTCCTGACGATTGACAGGTACCTGGCCATTGT 2731726
Score = 100 bits (110), Expect = 3e-16
Identities = 114/153 (75%), Gaps = 0/153 (0%)
Strand=Plus/Minus
Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669
|||||| |||| ||| | |||| || |||| || ||||||| |||| ||||| |
Sbjct 2668263 GTACTCCTTGGTATTTGTCATTGGCCTGGTTGGAAACCTCCTGGTGGTCCTGGTCCTTGT 2668204
Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729
| ||||||||||||| | |||||||||||||| ||| | ||||||||| || |||
Sbjct 2668203 GCAATACAAGAGGCTCAAAAACATGACCAACATCTACCTCCTGAACCTGGCCATTTCTGA 2668144
Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGAT 8762
|||||| | | ||||| || ||||| | |||
Sbjct 2668143 CCTGCTCTTCCTGTTCACACTGCCCTTCTTGAT 2668111
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583392278793600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |