Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq12903 266 4e-66 seq6472 210 3e-49 seq3 156 5e-33 seq7015 149 7e-31 seq5838 104 3e-17 >seq12903 Length=10971483 Score = 266 bits (294), Expect = 4e-66 Identities = 249/317 (79%), Gaps = 0/317 (0%) Strand=Plus/Plus Query 171069 CAGGTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCC 171128 || ||| ||||||||||||| || | || |||| |||| || || ||| | | |||||| Sbjct 5622117 CAAGTGCTGACCCAGGATGAAAGAGAGCAGCTGTACACTCCTGCTTCCTTAAGATGCTCT 5622176 Query 171129 CTGCAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCA 171188 ||||| | | | ||||| || |||||||| || |||||||||| || | | ||| Sbjct 5622177 CTGCAAAATGCCCAGGAAGTCCTGATTGTGACATGGCAGAAAAAGAAAGCTGTAAGCCCA 5622236 Query 171189 GAGAACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGAC 171248 || |||||| | || || ||| | |||| || |||||| ||||||| || ||||||||| Sbjct 5622237 GAAAACATGGTCACCTTCAGCGAGAACCATGGAGTGGTGATCCAGCCTGCCTATAAGGAC 5622296 Query 171249 AAGATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACC 171308 ||||||||||| |||||||| ||||||||||||||||||||||| || ||||||| |||| Sbjct 5622297 AAGATAAACATTACCCAGCTGGGACTCCAAAACTCAACCATCACCTTCTGGAATATCACC 5622356 Query 171309 TTAGAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCG 171368 | ||||| || ||||| |||| || ||||| || || ||||| |||||||| ||||| Sbjct 5622357 CTGGAGGATGAAGGGTGTTACATGTGTCTCTTCAATACTTTTGGTTCTGGGAAGATCTCA 5622416 Query 171369 GGGGTGGCCTGCCTCAC 171385 || ||||||||||| Sbjct 5622417 GGAACAGCCTGCCTCAC 5622433 >seq6472 Length=2227648 Score = 210 bits (232), Expect = 3e-49 Identities = 244/327 (75%), Gaps = 4/327 (1%) Strand=Plus/Minus Query 146771 CCTAAACCGCCAGCGCCATGGGGATGGAGGGGTGCGGGTGGTAGCCCTCGAGGGCAAAAT 146830 ||||||| |||| |||| || | || ||||| | ||| || || | ||| | Sbjct 2220131 CCTAAACAGCCATTTCCATTTTAATAGTTGGATGCGGATTGTACCCTTCAATCTGAAAGT 2220072 Query 146831 CTTCTGCCCTGAAATCGTCTATGTCCTCCACCCGCCTCAAAATCTTGAGCTTGGGGAAGG 146890 |||| || |||| || || || | ||| || | | |||||||||||| ||||| | Sbjct 2220071 CTTCAGCTTTGAAGTCATCAATTTTCTCAACTTTTCGAAGAATCTTGAGCTTTGGGAAAG 2220012 Query 146891 GTCGGGGGTTCCTGGCC--AGCTGAATTTTCAGGGGCTCCACGTGGTTGAGGTAGACGTG 146948 ||| ||| | || || |||||||||||||| ||||| | ||| || ||||| | || Sbjct 2220011 GTCTGGGTT--CTCGCTGAAGCTGAATTTTCAGTGGCTCGATGTGATTCAGGTAAATATG 2219954 Query 146949 CGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGGCTTAAGGCCGGTCACGTGGGCCACCAT 147008 || || |||| ||||| |||||||| || ||||| ||||| || | ||| || | ||| Sbjct 2219953 TGCATCTCCCAAAGTGTGTACAAAGTCACCTGGCTTCAGGCCCGTGATGTGCGCAATCAT 2219894 Query 147009 GTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAGGGGACCCCCAGGCCCATGTCCCCCGA 147068 ||| |||||||| | ||||||||| |||||||| || || || ||||||||||| ||||| Sbjct 2219893 GTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGCACGCCTAGGCCCATGTCTCCCGA 2219834 Query 147069 CCTCTGGTACAGCTGGCACGAGAGCTC 147095 ||||||||||||||||| || ||||| Sbjct 2219833 TCTCTGGTACAGCTGGCAGGACAGCTC 2219807 >seq3 Length=9913731 Score = 156 bits (172), Expect = 5e-33 Identities = 135/170 (79%), Gaps = 12/170 (7%) Strand=Plus/Minus Query 178228 TTAAGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGG 178287 || |||||||| |||||||||| |||||||| |||||||| ||||||||| ||||||||| Sbjct 3751758 TTTAGGGTTACCTGGGTTGCCAAGCCTTGTCTGAGATGATCCAGTTTTACCTGGAGGAGG 3751699 Query 178288 TGATGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAA 178347 ||||||| || || ||||| ||| | ||| ||||| |||||||| || | Sbjct 3751698 TGATGCCCCAAGCTGAGAACCAC------------GACCCAGACATCAAGGAGCACGTGA 3751651 Query 178348 ACTCTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 |||| |||||||| || || |||||||| || ||||||||||||| ||| Sbjct 3751650 ACTCCCTGGGGGAGAATCTGAAGACCCTCAGGCTGAGGCTGCGGCGCTGT 3751601 Score = 96.9 bits (106), Expect = 4e-15 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| || || || |||||||| |||||||||||||| || || || ||||||| Sbjct 3749391 AGCTCCAAGAGAAAGGCGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 3749332 Query 178522 TAGAAGCTTACATGACAACAAAAATG 178547 ||||||| |||||||||| |||||| Sbjct 3749331 TAGAAGCCTACATGACAATGAAAATG 3749306 >seq7015 Length=9623085 Score = 149 bits (164), Expect = 7e-31 Identities = 132/165 (80%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || | ||| || | |||||| ||||| || | ||||||||| |||||||| Sbjct 2250483 CTTCAGGCCCGTGATGTGCGCAATCATGTACGTGAGTAGGGCGTAGCTGGCGATGTTGAA 2250424 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 || || || ||||||||||| ||||| ||||||||||||||||| || ||||| | || Sbjct 2250423 AGGCACGCCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTT 2250364 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 |||| || |||||||| ||| |||||| || ||||| ||||| Sbjct 2250363 CACCACATAGAACTGGCAGAGGGCGTGGCATGGAGGCAGTGCCAT 2250319 Score = 96.9 bits (106), Expect = 4e-15 Identities = 118/161 (73%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 147282 GGCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTG 147341 ||||||||| ||||||||||||||||| || ||||| |||| ||| || | |||| Sbjct 2246314 GGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGACCCAAGTCCCCTTCTTCTCTGGT 2246255 Query 147342 CGAGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCC 147401 ||||| ||| | | | ||| || |||| || | ||| |||||||| |||||| Sbjct 2246254 GGAGAACCCCAGGCTGTCCAAAAAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCC 2246195 Query 147402 CTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGA 147442 ||||| || |||||||||| | ||||| ||| ||| || Sbjct 2246194 CTTGGAAGACAGCTCCTTAGCATTTGTGGATCCCTGGAAGA 2246154 >seq5838 Length=3156588 Score = 104 bits (114), Expect = 3e-17 Identities = 200/294 (68%), Gaps = 6/294 (2%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 ||| || |||||||| | || || | ||||| | ||||| | | ||||||| Sbjct 2731439 GTATTCCCTGGTGTTCACTGTGGGCCTCTTGGGCAACGTGGTGGTGGTGATGATCCTCAT 2731498 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||| |||| ||||||| | || ||||||||||||| |||| ||||||||||| || || Sbjct 2731499 AAAATACAGGAGGCTCCGAATTATGACCAACATCTACCTGCTCAACCTGGCCATTTCGGA 2731558 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 |||||| | | |||||||| || || ||||| |||| || ||| | | | Sbjct 2731559 CCTGCTCTTCCTCTTCACCCTTCCGTTCTGGATCCACT--ATGTCAGGGAGCA----TAA 2731612 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 |||| | || ||| ||||||||||| | | ||| ||| || | |||| Sbjct 2731613 CTGGGTCTTCGGCCATGACATGTGTAAGCTCCTCTCGGGGTTTTATTACACAGGCTTGTA 2731672 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGT 8903 |||||| || | || || ||||| |||| | |||||||| || || |||| Sbjct 2731673 CAGCGAGATCTTTTTCATAATCCTCCTGACGATTGACAGGTACCTGGCCATTGT 2731726 Score = 100 bits (110), Expect = 3e-16 Identities = 114/153 (75%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||| ||| | |||| || |||| || ||||||| |||| ||||| | Sbjct 2668263 GTACTCCTTGGTATTTGTCATTGGCCTGGTTGGAAACCTCCTGGTGGTCCTGGTCCTTGT 2668204 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 | ||||||||||||| | |||||||||||||| ||| | ||||||||| || ||| Sbjct 2668203 GCAATACAAGAGGCTCAAAAACATGACCAACATCTACCTCCTGAACCTGGCCATTTCTGA 2668144 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGAT 8762 |||||| | | ||||| || ||||| | ||| Sbjct 2668143 CCTGCTCTTCCTGTTCACACTGCCCTTCTTGAT 2668111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583392278793600