Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201
5-03-12] 13,124 sequences; 2,970,124,662 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq3971 307 1e-78
seq5093 232 9e-56
seq7904 125 1e-23
seq2336 120 4e-22
seq6727 109 8e-19
seq5016 107 3e-18
>seq3971
Length=4903791
Score = 307 bits (340), Expect = 1e-78
Identities = 632/936 (68%), Gaps = 18/936 (2%)
Strand=Plus/Plus
Query 39270 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTT 39326
|||| |||||| |||| || | |||| ||| ||| | | ||||| ||||||||
Sbjct 744299 TTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACACCACTCCCATCC 744358
Query 39327 TTTGGTATTCACCA--ACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 39384
| || || || || || | ||||| || || || || ||| || ||| |||||
Sbjct 744359 TCTGATACTCTCCCTTACTCTCTTCTCAAAGAAGTTCGT-----CTTTCAGTGAAATATT 744413
Query 39385 TTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAAT 39444
||||| || ||||| || || | | | | || |||| || | ||| ||
Sbjct 744414 CTCCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCAGCAT 744473
Query 39445 CAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAG 39504
||| ||||| ||||| || ||| || ||||| | |||||||| || || |
Sbjct 744474 G--TCTGTCTGCCACAAACTCAATGCATTGCTTCATTAGAGTGCAATTCATCCCAATAGG 744531
Query 39505 TTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTAT 39564
|| || || | ||||| || || || || | ||| || || || | | |||||
Sbjct 744532 CTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTAT 744591
Query 39565 CGATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAA 39624
| ||||| ||| || ||| || | | ||||| ||||| | ||| || ||
Sbjct 744592 TTCTCTTACTCTCTCCTCCAGTGGTTTGTGTACCAGGTGTTTGAACATCAGGCAAGCAAA 744651
Query 39625 GTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCAT 39684
||||| |||| ||||||||||| ||||| | ||| || ||||||||||| ||||||||
Sbjct 744652 ATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCAT 744711
Query 39685 TAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTC 39744
|| || || || |||||||| ||||| | |||||| | |||||||||| |||||||
Sbjct 744712 CAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGA---TGCCTTC 744768
Query 39745 TACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGT---ATCCACTT 39801
| |||| ||||| | |||| | || || || | | || || | ||||| |
Sbjct 744769 TGCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTGTCCCCAATCCAGTG 744828
Query 39802 CTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATA 39861
| |||||||| || |||||||| ||||||||||| ||||| || ||||| | |||| |
Sbjct 744829 CAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAGGAGAAA 744888
Query 39862 ATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATG 39921
| |||| | |||||| | || || || || | |||||||||||| |||||
Sbjct 744889 TTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATACGGAAACTATACATTTCAGAATG 744948
Query 39922 GATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTC 39981
|||||||| || || || || || || | ||||| | ||||| || || || || ||
Sbjct 744949 TATGTTTTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCATCTGAACTTC 745008
Query 39982 TGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGC 40041
| | ||||| ||| |||| |||||||| ||||| |||||||| || ||||| || |
Sbjct 745009 TTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAAC 745068
Query 40042 CAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATC 40101
|| | ||| ||||||| | | || ||||| ||| | ||||| | ||
Sbjct 745069 CAGAATATGAGATATAAAATCTCTCTCCTCGGGCTTCAGGGATTCCCAGTGCCAAACGTC 745128
Query 40102 TTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTT 40161
|| || | || || || || || ||||| || || || || ||||| || ||||| |
Sbjct 745129 CTTGGACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACATCTG 745188
Query 40162 CCATATATCACGATATTGTATTGGAAAAATAACAAA 40197
||| |||||| | || | || || || || |||||
Sbjct 745189 CCAGATATCATGGTACTCGATGGGGAAGATGACAAA 745224
>seq5093
Length=2087638
Score = 232 bits (256), Expect = 9e-56
Identities = 398/566 (70%), Gaps = 19/566 (3%)
Strand=Plus/Plus
Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675
||| || |||| ||| |||| |||||||| || ||||| | ||| || |||||||||||
Sbjct 528961 GCAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAG 529020
Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735
|||||||| || || || || |||||||| |||| |||||||| ||||||||| |
Sbjct 529021 GCCAGGCATCAGTCCTCGTTTCTTGAGCCAGGATATCAGTGCAAAAGAACCAGAAAAGCA 529080
Query 39736 GATGCCTTCTACTGCTGCAAA---TGCAACAAG-TCTCTCTCCGTAACTTGTATCATTAT 39791
| ||| |||| || ||||| ||||||| | |||| | ||||| | | | ||
Sbjct 529081 GGTGCTTTCT-CTAGGGCAAACGCTGCAACACGTTCTCCATGAGTAACGTCT-TTGTTCC 529138
Query 39792 GTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 39851
||||| | | ||||| | || |||||||| |||| |||||||||||| || ||||
Sbjct 529139 CAATCCAATACAAGACCCAAACTGCCTTCTTCTTGACAC-AGGCATTGTTTCAATGGCAT 529197
Query 39852 TAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACA 39911
| |||||| | | ||| |||||||| || ||| || || | ||||||| |
Sbjct 529198 TGAAGAGAAACTCCCTTT----GTTATCTTTA--ATGTGTGTCAATAAGGAGACTATTTA 529251
Query 39912 TTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAA 39971
| || | ||| |||||||| || || || || || || || || || | ||| ||||
Sbjct 529252 TGTCAGCATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAA 529311
Query 39972 TTTGTACCTC-TGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCG 40030
| || | || ||||| |||| |||| |||| ||||||| ||||| ||||||| ||
Sbjct 529312 TCTGAATTTCTTGAAC-AAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCT 529370
Query 40031 GCAAAAAATGCC--AATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCC 40088
||||| || ||| |||||| | | ||||||||| |||| || || ||| | ||
Sbjct 529371 GCAAAGAAAGCCAGAATACAGGAT--ATAAAATATCTTTCCTCAGGCTTCAGGGCTTCCC 529428
Query 40089 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148
||| || || || || | || ||||| | || |||| || || ||||| | |
Sbjct 529429 AGTGCCAAATGTCCTTGGACAGGTCCACTTCCTGGGCCATCCAGAAAGAAACCTCTACTT 529488
Query 40149 TTTTGTACATGTTCCATATATCACGA 40174
| || ||| | ||||| |||||| ||
Sbjct 529489 TCTTATACGTTTTCCAAATATCATGA 529514
>seq7904
Length=13651311
Score = 125 bits (138), Expect = 1e-23
Identities = 102/124 (82%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
|||||||||| || || | ||| || ||||||||||| |||||||| || || || || |
Sbjct 3487596 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 3487655
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
||||||| ||||| | |||||||| || ||||||||||||||||| ||||| ||||| |
Sbjct 3487656 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 3487715
Query 39759 CAAC 39762
| ||
Sbjct 3487716 CTAC 3487719
>seq2336
Length=9258750
Score = 120 bits (132), Expect = 4e-22
Identities = 107/134 (80%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700
|||||||| || || | ||| || ||||| |||||||| ||||| ||||| | ||| ||
Sbjct 5792327 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCTTT 5792268
Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760
||||| ||||| |||||||||||||| || ||||| || |||||||| || ||||| ||
Sbjct 5792267 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 5792208
Query 39761 ACAAGTCTCTCTCC 39774
|| | ||| || ||
Sbjct 5792207 ACCACTCTTTCCCC 5792194
>seq6727
Length=1359887
Score = 109 bits (120), Expect = 8e-19
Identities = 125/168 (74%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393
|||| || | ||| |||||||| ||||| || || || | || || |||||||| || |
Sbjct 338137 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTGGCTGCCAGGA 338196
Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453
||||||||||||| || | ||||| | || || ||| |||| ||||| || |||||||
Sbjct 338197 TAGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 338256
Query 70454 ATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501
||| | || || || || | || | ||||| || ||||||||||
Sbjct 338257 GTTCCACTGTGGTGACCCCACTGTACAAGCCTTGGATTACTTTCATGG 338304
Score = 84.2 bits (92), Expect = 3e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654
||||| ||||| || ||||| |||||||||||||| | || |||||||||| | |
Sbjct 321322 ACTCGCTTCATGAAGAGATCAGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTGC 321381
Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714
||||| |||||||| || || || | ||| || || || | || || ||||||| ||
Sbjct 321382 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGC 321441
Query 69715 TCTAGATATATCGC 69728
|| || || || ||
Sbjct 321442 TCCAGGTAAATAGC 321455
>seq5016
Length=4328724
Score = 107 bits (118), Expect = 3e-18
Identities = 240/356 (67%), Gaps = 7/356 (2%)
Strand=Plus/Minus
Query 37347 TCCTGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACCATCTAGAGATTGTACTTCATT 37406
||| || || ||||| ||| | || || || || |||| | || ||| | ||| |
Sbjct 108976 TCCAGTAGAACCAAAACCTCCTGAACCCCTTTCGGTGTCATCCAAAGCTTGAATTTCTTC 108917
Query 37407 CAGATCAGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCGCCCGTATTTAT 37466
| || |||||| | || | || | || ||||| || ||| ||| ||| | || |
Sbjct 108916 TATTTCTGGATAAAAAATCCATTCGCAAATGAGCTGTGCAGTTCAATCACCCTTTTTGAC 108857
Query 37467 TTTAAAATTACATTTTCCATTATTTATCAGAATGACTCCAATATTCCCCCTATAATCTTC 37526
|| ||| || ||| ||| || | ||| | || |||| ||| || |||||||||||
Sbjct 108856 TTCAAACTTTTCTTTGCCAAAGTTAAACAGTACAACACCAACATTTCCTCTATAATCTTC 108797
Query 37527 ATCGATTACTCCGCCTCCTACATCAATA---CCTTTTAGAGACAAACCCGATCTAGGAGC 37583
||| || || || |||||||||||||| |||| || ||| || || | |||||
Sbjct 108796 ATCTATGACACCAGCTCCTACATCAATAAAGTGTTTTGCAGCCAAGCCTGACCATGGAGC 108737
Query 37584 TATTCTTCCATAACAAAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAATTGTCT 37643
|| |||||||||||| |||| | ||| |||| || ||||| | ||| | ||
Sbjct 108736 TACTCTTCCATAACACCCAGAAGGCAGCGCTATCTGAATGTCCGTTTTCA-CAAGAG-CT 108679
Query 37644 TTCTCC--AGGAAGGATGGTATAATCGTACGCGCTATATAAATCATATCCCGCGGC 37697
|||||| ||| | || || ||||| || || || || | | || ||||||||
Sbjct 108678 TTCTCCATAGGTGGTATTGTGTAATCATAGGCACTGTACAGGCCGTAGCCCGCGGC 108623
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686796112611360
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