Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq3971 244 8e-60 seq5093 183 2e-41 seq6472 147 2e-30 seq7904 113 4e-20 seq10437 93.3 3e-14 seq2336 86.0 5e-12 >seq3971 Length=4903791 Score = 244 bits (270), Expect = 8e-60 Identities = 644/969 (66%), Gaps = 37/969 (4%) Strand=Plus/Minus Query 43677 TGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGC 43736 |||| | |||||| || | | |||||| | || || || | || ||||| || |||| Sbjct 745247 TGCTGAGAGAAAACCCCTGCCGCTTTGTCATCTTCCCCATCGAGTACCATGATATCTGGC 745188 Query 43737 AAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAG 43796 | ||||| || || || | || || || ||||| || || || || || || | || | Sbjct 745187 AGATGTATAAGAAGGCGGAAGCTTCCTTCTGGACCGCCGAGGAGGTGGACCTGTCCAAGG 745128 Query 43797 AC--TTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTT 43854 || || |||| | ||| | | | || || | || | | ||||||||||| || | Sbjct 745127 ACGTTTGGCAC-TGGGAATCCCTGAAGCCCG-AGGAGAGAGATTTTATATCTCATATTCT 745070 Query 43855 GGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCA 43914 || || ||||| || || || || ||||| |||||||| ||||| || ||| || Sbjct 745069 GGTTTTCTTTGCAGCAAGTGATGGCATAGTAAATGAAAACTTGGTGGAGCGATTTAGCCA 745010 Query 43915 AGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATAT 43974 ||||||||| | ||||||| || ||||| | ||| || ||||||||||||||||| || Sbjct 745009 AGAAGTTCAGATGACAGAAGCCCGCTGTTTCTGTGGCTTCCAAATTGCCATAGAAAACAT 744950 Query 43975 TCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCA 44034 ||||| |||||||| ||| | | || || || ||||| |||||| | || | | | Sbjct 744949 ACATTCTGAAATGTATAGTTTCCGTATTGACACTTACATAAAAGATCCCAAAGAAAGGGA 744890 Query 44035 TCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCT 44094 | | ||||| || ||||| | ||| | || | || ||||| |||||| | Sbjct 744889 ATTTCTCCTCAATGCCATTGAAACGATGCCTTGTGTCAAGAAGAAGGCAGATTGGGCCTT 744830 Query 44095 TAAATGGAT---AAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGT 44151 | ||||| | | | | | | | ||| ||||| |||| | ||||| | | Sbjct 744829 GCACTGGATTGGGGACAAAGAAGCTACCTATGGTGAACGTGTTGTAGTCTTTGCTGCAGC 744770 Query 44152 GGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTT 44211 ||||||| ||||||| || | ||||| | ||||| ||| | ||||||||||| | Sbjct 744769 AGAAGGCA---TCTTTTCTGGTTATTTTGCATCGATATTCTGGCTCAAGAAACGAGGACT 744713 Query 44212 GATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGA 44271 ||||||||| | || ||||| ||||| | || || | ||||| || ||||| || || Sbjct 744712 GATGCCTGGCCTCACATTTTCCAATGAACTTATTAGCAGAGATGAGGGTTTACACTGTGA 744653 Query 44272 TTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTAC 44331 |||||||||| || | | | | || | | || | | || | | ||| | | | Sbjct 744652 TTTTGCTTGCCTGATGTTCAAACACCTGGTACAC-AAACCACTGGAGG--AGAGAGTAAG 744596 Query 44332 AGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGT 44391 ||| || || | | || || ||||||||| ||||| | || || || ||||| Sbjct 744595 AGAAATAATTATCAATGCTGTTCGGATAGAACAGGAATTCCTCACTGAGGCCTTGCCTGT 744536 Query 44392 AAATTTAATAGGAATGAA-TGAACTTTTGATGAACCAATATATTGAATACATTGCAGATC 44450 || || || ||||| || || | | ||||| |||| ||||| | | ||||| Sbjct 744535 GAAGCCTATTGGGATGAATTGCAC-TCTAATGAAGCAATGCATTGAGTTTGTGGCAGACA 744477 Query 44451 GTTTAC-TTTTGGAACTGGGTTGCGATAAACACTATATT----GTACAAAACCCGTTTGA 44505 | || | |||||||||||| | | || | || ||| | ||||| ||||| Sbjct 744476 G---ACATGCTGGAACTGGGTT----TTAGCAAGGTTTTCAGAGTAGAGAACCCATTTGA 744424 Query 44506 TTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGT--TGGA 44563 |||||||| |||||||| || ||| || ||||| ||||| || | || ||| Sbjct 744423 CTTTATGGAGAATATTTCACTGAAAG-----ACGAACTTCTTTGAGAAGAGAGTAAGGGA 744369 Query 44564 GAATATCAGCGAATGGGCGTCATGATAA---CAAGTGACAATAAATTTACTACGGATGAA 44620 || |||||| | ||||| || || || ||| || ||| ||||| ||||| Sbjct 744368 GAGTATCAGAGGATGGGAGTGGTGTCAAGTCCAACAGAGAATTCTTTTACCTTGGATGCT 744309 Query 44621 GATTTCTAA 44629 || |||||| Sbjct 744308 GACTTCTAA 744300 >seq5093 Length=2087638 Score = 183 bits (202), Expect = 2e-41 Identities = 388/568 (68%), Gaps = 17/568 (3%) Strand=Plus/Minus Query 43723 TCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGT 43782 |||||| || ||| ||| ||| || |||| | ||| || || |||| || | ||||| Sbjct 529514 TCATGATATTTGGAAAACGTATAAGAAAGTAGAGGTTTCTTTCTGGATGGCCCAGGAAGT 529455 Query 43783 TGATTTGACTAAAGAC--TTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTT 43840 || || | || ||| || |||| ||| || | || || | |||| | ||||| Sbjct 529454 GGACCTGTCCAAGGACATTTGGCAC--TGGGAAGCCCTGAAGCCTGAGGAAAGATATTTT 529397 Query 43841 ATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTT 43900 ||||| | || |||| || ||||| || | || |||||||| ||||||| ||||| Sbjct 529396 ATATCCTGTATTCTGGCTTTCTTTGCAGCATGTGATGGGATAGTAGATGAAAACTTGGTG 529337 Query 43901 AGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAAT 43959 | |||| |||||| |||| ||||| |||| | || || ||||| || ||||| Sbjct 529336 GAACAATTTGTTCAAGAAATTCAGATTAC-AGAAACCTTCTGCTTCTATGGCTTCCAAAT 529278 Query 43960 TGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019 ||| |||||||| || ||| | || || | ||||| || || || || |||| ||||| Sbjct 529277 TGCTATAGAAAACATACATGCTGACATAAATAGTCTCCTTATTGACAC--ACATTAAAGA 529220 Query 44020 TGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAA 44079 | | | || | || | || ||||| || |||||| | |||| | | || | || Sbjct 529219 TAACAAAGGGA-GTTTC---TCTTCAATGCCATTGAAACAATGCCTGTG-TCAAGAAGAA 529165 Query 44080 AGCAGACTGGGCCCTTAAATGGATA---AATTCAAATGATTCTTTTGGAGAACGACTTGT 44136 |||| |||| | | | ||||| || | | | | || ||||||||| ||| Sbjct 529164 GGCAGTTTGGGTCTTGTATTGGATTGGGAACAAAGACGTTACTCATGGAGAACGTGTTGC 529105 Query 44137 CGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTT 44196 |||||||| | | | ||| || | |||||| || || ||||| |||| ||| | Sbjct 529104 AGCGTTTGCCCTAGAGAAAG-CACCTGCTTTTCTGGTTCTTTTGCACTGATATCCTGGCT 529046 Query 44197 AAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGA 44256 ||||||||||| |||||||||| | || ||||| ||||| | || || ||||||| Sbjct 529045 CAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTTATTAGCAGTGATGA 528986 Query 44257 AGGCTTACATTGCGATTTTGCTTGCTTG 44284 || ||||| || | ||||||||| || Sbjct 528985 GGGTTTACACTGTTACTTTGCTTGCCTG 528958 >seq6472 Length=2227648 Score = 147 bits (162), Expect = 2e-30 Identities = 186/256 (73%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 41098 GTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTA 41157 |||| ||||| || || |||| || ||||| || |||||||| ||||| || || || | Sbjct 2219805 GTGAGCTGTCCTGCCAGCTGTACCAGAGATCGGGAGACATGGGCCTAGGCGTGCCTTTCA 2219864 Query 41158 ACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTG 41217 |||| || || || || ||||||||||| |||||||| ||| | || | || || | Sbjct 2219865 ACATCGCCAGCTACGCCCTGCTCACGTACATGATTGCGCACATCACGGGCCTGAAGCCAG 2219924 Query 41218 GTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCGTTAA 41277 |||| ||||| ||||| || ||||||| |||||||||| | |||||||| ||||| | | Sbjct 2219925 GTGACTTTGTACACACTTTGGGAGATGCACATATTTACCTGAATCACATCGAGCCACTGA 2219984 Query 41278 CAGAACAACTGACACGAAAACCTAGACCATTTCCAACGCTACTTATTAAACGCGCTGTTG 41337 | || || ||| |||| ||||| || |||| ||| ||| || |||| Sbjct 2219985 AAATTCAGCTTCAGCGAGAACCCAGACCTTTCCCAAAGCTCAAGATTCTTCGAAAAGTTG 2220044 Query 41338 AAAACATTGATGATTT 41353 | || |||||||| || Sbjct 2220045 AGAAAATTGATGACTT 2220060 >seq7904 Length=13651311 Score = 113 bits (124), Expect = 4e-20 Identities = 92/109 (84%), Gaps = 2/109 (2%) Strand=Plus/Minus Query 43913 CAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAA 43971 ||||||||||| ||||| |||||| || ||||| ||||| || ||||||||||| ||||| Sbjct 3489872 CAAGAAGTTCAGATTAC-AGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAA 3489814 Query 43972 TATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| |||||||| |||||||| || || || ||||| |||||| Sbjct 3489813 CATACATTCTGAAATGTATAGTCTTCTTATTGACACTTACATAAAAGAT 3489765 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 || ||||| | || || ||||| | ||||||||||| |||||||| || || ||||| Sbjct 3487731 GGTGAACGTGTCGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCA 3487672 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | ||||| ||| | ||||||||||| |||||||||| | || ||||| ||||| | Sbjct 3487671 TCGATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTT 3487612 Query 44243 ATAAGTCGTGATGA 44256 || || | ||||| Sbjct 3487611 ATCAGCAGAGATGA 3487598 >seq10437 Length=145250 Score = 93.3 bits (102), Expect = 3e-14 Identities = 196/290 (68%), Gaps = 2/290 (1%) Strand=Plus/Minus Query 77394 TCCAGCCGTTCTGCTTCCAGTTCTTAACCCACTTAGTCACACCATTGATGGTGAACATGC 77453 |||| || || | |||||| | | ||| || ||||| | || ||| || || ||||| | Sbjct 12265 TCCACCCATTTTCCTTCCAACTTTGAACACAGTTAGTTATACTATTTATAGTAAACATAC 12206 Query 77454 TGTCTGTGTAGACGACCAGCTTCTTGATTTTGTTCTCCTGAGCTTGTTGCAGTGCTTTGG 77513 ||||||| || | ||||| || |||| || | ||| ||||||| | |||||| Sbjct 12205 TGTCTGTATACAGAACCAGTTTACTGATGTTTTGAGCCTTTGCTTGTTCAATGGCTTTGC 12146 Query 77514 ATGCAGCCTGGATTTCAGCGCGCTGGTTTGTCTGTTGCCCCACAAGTCGCTCTGCAACAT 77573 | ||||| || ||||| || | |||||||||||| |||| ||||| | |||| Sbjct 12145 AGGCAGCATGAATTTCTGCTCTTTGGTTTGTCTGTCGCCCAGGAAGTCTAATGCCTACAT 12086 Query 77574 TAAGCGGGTGATTATAACCCCAATATACGCCAATGCCAGCTC-GGGCTTGTTTCTGTCCG 77632 | | || || ||||| || |||| || || |||| ||| | | | | | Sbjct 12085 TTAAAGGATGGCCCGGCCCCCAGTAAACGCAGATTCCTGCTCTTGGCCT-TCTACGGGCA 12027 Query 77633 TTTGATAAGCAACAGCCGTCAGTGTAGACCACCACGGCGTCACCCATGTA 77682 || |||| ||||| ||||||||||| || || ||| |||||||| Sbjct 12026 TTACTGGAGCAGCAGCCATCAGTGTAGACGACAACAAAGTCTCCCATGTA 11977 >seq2336 Length=9258750 Score = 86.0 bits (94), Expect = 5e-12 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 43698 GGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGG 43757 |||||||| | |||||||| ||||| | ||| || ||| ||||||| ||| | ||||||| Sbjct 5780037 GGTTTGTCATCTTTCCAATCCAATACCCTGATATTTGGAAAATGTATAAACAGGCACAGG 5780096 Query 43758 CGTCATTTTGGACAGCAGAAGAAGT 43782 | || || |||||||||||||| || Sbjct 5780097 CTTCCTTCTGGACAGCAGAAGAGGT 5780121 Score = 86.0 bits (94), Expect = 5e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || ||||| |||||||| || ||||| | Sbjct 5801270 AAAATCCTTTTGATTTTATGGAAAACATTTCTTTAGAAGGAAAAACAAATTTCTTTGAGA 5801329 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| || |||||||| Sbjct 5801330 AACGAGTTTCGGAGTATCAGCG 5801351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397392427409620