Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201
5-03-12] 13,124 sequences; 2,970,124,662 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq3971 244 8e-60
seq5093 183 2e-41
seq6472 147 2e-30
seq7904 113 4e-20
seq10437 93.3 3e-14
seq2336 86.0 5e-12
>seq3971
Length=4903791
Score = 244 bits (270), Expect = 8e-60
Identities = 644/969 (66%), Gaps = 37/969 (4%)
Strand=Plus/Minus
Query 43677 TGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGC 43736
|||| | |||||| || | | |||||| | || || || | || ||||| || ||||
Sbjct 745247 TGCTGAGAGAAAACCCCTGCCGCTTTGTCATCTTCCCCATCGAGTACCATGATATCTGGC 745188
Query 43737 AAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAG 43796
| ||||| || || || | || || || ||||| || || || || || || | || |
Sbjct 745187 AGATGTATAAGAAGGCGGAAGCTTCCTTCTGGACCGCCGAGGAGGTGGACCTGTCCAAGG 745128
Query 43797 AC--TTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTT 43854
|| || |||| | ||| | | | || || | || | | ||||||||||| || |
Sbjct 745127 ACGTTTGGCAC-TGGGAATCCCTGAAGCCCG-AGGAGAGAGATTTTATATCTCATATTCT 745070
Query 43855 GGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCA 43914
|| || ||||| || || || || ||||| |||||||| ||||| || ||| ||
Sbjct 745069 GGTTTTCTTTGCAGCAAGTGATGGCATAGTAAATGAAAACTTGGTGGAGCGATTTAGCCA 745010
Query 43915 AGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATAT 43974
||||||||| | ||||||| || ||||| | ||| || ||||||||||||||||| ||
Sbjct 745009 AGAAGTTCAGATGACAGAAGCCCGCTGTTTCTGTGGCTTCCAAATTGCCATAGAAAACAT 744950
Query 43975 TCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCA 44034
||||| |||||||| ||| | | || || || ||||| |||||| | || | | |
Sbjct 744949 ACATTCTGAAATGTATAGTTTCCGTATTGACACTTACATAAAAGATCCCAAAGAAAGGGA 744890
Query 44035 TCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCT 44094
| | ||||| || ||||| | ||| | || | || ||||| |||||| |
Sbjct 744889 ATTTCTCCTCAATGCCATTGAAACGATGCCTTGTGTCAAGAAGAAGGCAGATTGGGCCTT 744830
Query 44095 TAAATGGAT---AAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGT 44151
| ||||| | | | | | | | ||| ||||| |||| | ||||| | |
Sbjct 744829 GCACTGGATTGGGGACAAAGAAGCTACCTATGGTGAACGTGTTGTAGTCTTTGCTGCAGC 744770
Query 44152 GGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTT 44211
||||||| ||||||| || | ||||| | ||||| ||| | ||||||||||| |
Sbjct 744769 AGAAGGCA---TCTTTTCTGGTTATTTTGCATCGATATTCTGGCTCAAGAAACGAGGACT 744713
Query 44212 GATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGA 44271
||||||||| | || ||||| ||||| | || || | ||||| || ||||| || ||
Sbjct 744712 GATGCCTGGCCTCACATTTTCCAATGAACTTATTAGCAGAGATGAGGGTTTACACTGTGA 744653
Query 44272 TTTTGCTTGCTTGTTACTTGGATATCTAGGAGACGATAAGCCTTCATGTAAGACAATTAC 44331
|||||||||| || | | | | || | | || | | || | | ||| | | |
Sbjct 744652 TTTTGCTTGCCTGATGTTCAAACACCTGGTACAC-AAACCACTGGAGG--AGAGAGTAAG 744596
Query 44332 AGATATTGTTGTAGAGGCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGT 44391
||| || || | | || || ||||||||| ||||| | || || || |||||
Sbjct 744595 AGAAATAATTATCAATGCTGTTCGGATAGAACAGGAATTCCTCACTGAGGCCTTGCCTGT 744536
Query 44392 AAATTTAATAGGAATGAA-TGAACTTTTGATGAACCAATATATTGAATACATTGCAGATC 44450
|| || || ||||| || || | | ||||| |||| ||||| | | |||||
Sbjct 744535 GAAGCCTATTGGGATGAATTGCAC-TCTAATGAAGCAATGCATTGAGTTTGTGGCAGACA 744477
Query 44451 GTTTAC-TTTTGGAACTGGGTTGCGATAAACACTATATT----GTACAAAACCCGTTTGA 44505
| || | |||||||||||| | | || | || ||| | ||||| |||||
Sbjct 744476 G---ACATGCTGGAACTGGGTT----TTAGCAAGGTTTTCAGAGTAGAGAACCCATTTGA 744424
Query 44506 TTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGT--TGGA 44563
|||||||| |||||||| || ||| || ||||| ||||| || | || |||
Sbjct 744423 CTTTATGGAGAATATTTCACTGAAAG-----ACGAACTTCTTTGAGAAGAGAGTAAGGGA 744369
Query 44564 GAATATCAGCGAATGGGCGTCATGATAA---CAAGTGACAATAAATTTACTACGGATGAA 44620
|| |||||| | ||||| || || || ||| || ||| ||||| |||||
Sbjct 744368 GAGTATCAGAGGATGGGAGTGGTGTCAAGTCCAACAGAGAATTCTTTTACCTTGGATGCT 744309
Query 44621 GATTTCTAA 44629
|| ||||||
Sbjct 744308 GACTTCTAA 744300
>seq5093
Length=2087638
Score = 183 bits (202), Expect = 2e-41
Identities = 388/568 (68%), Gaps = 17/568 (3%)
Strand=Plus/Minus
Query 43723 TCATGACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGT 43782
|||||| || ||| ||| ||| || |||| | ||| || || |||| || | |||||
Sbjct 529514 TCATGATATTTGGAAAACGTATAAGAAAGTAGAGGTTTCTTTCTGGATGGCCCAGGAAGT 529455
Query 43783 TGATTTGACTAAAGAC--TTAGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTT 43840
|| || | || ||| || |||| ||| || | || || | |||| | |||||
Sbjct 529454 GGACCTGTCCAAGGACATTTGGCAC--TGGGAAGCCCTGAAGCCTGAGGAAAGATATTTT 529397
Query 43841 ATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTT 43900
||||| | || |||| || ||||| || | || |||||||| ||||||| |||||
Sbjct 529396 ATATCCTGTATTCTGGCTTTCTTTGCAGCATGTGATGGGATAGTAGATGAAAACTTGGTG 529337
Query 43901 AGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAAT 43959
| |||| |||||| |||| ||||| |||| | || || ||||| || |||||
Sbjct 529336 GAACAATTTGTTCAAGAAATTCAGATTAC-AGAAACCTTCTGCTTCTATGGCTTCCAAAT 529278
Query 43960 TGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019
||| |||||||| || ||| | || || | ||||| || || || || |||| |||||
Sbjct 529277 TGCTATAGAAAACATACATGCTGACATAAATAGTCTCCTTATTGACAC--ACATTAAAGA 529220
Query 44020 TGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTACCTGCGATTAAACATAA 44079
| | | || | || | || ||||| || |||||| | |||| | | || | ||
Sbjct 529219 TAACAAAGGGA-GTTTC---TCTTCAATGCCATTGAAACAATGCCTGTG-TCAAGAAGAA 529165
Query 44080 AGCAGACTGGGCCCTTAAATGGATA---AATTCAAATGATTCTTTTGGAGAACGACTTGT 44136
|||| |||| | | | ||||| || | | | | || ||||||||| |||
Sbjct 529164 GGCAGTTTGGGTCTTGTATTGGATTGGGAACAAAGACGTTACTCATGGAGAACGTGTTGC 529105
Query 44137 CGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTT 44196
|||||||| | | | ||| || | |||||| || || ||||| |||| ||| |
Sbjct 529104 AGCGTTTGCCCTAGAGAAAG-CACCTGCTTTTCTGGTTCTTTTGCACTGATATCCTGGCT 529046
Query 44197 AAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGA 44256
||||||||||| |||||||||| | || ||||| ||||| | || || |||||||
Sbjct 529045 CAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTTATTAGCAGTGATGA 528986
Query 44257 AGGCTTACATTGCGATTTTGCTTGCTTG 44284
|| ||||| || | ||||||||| ||
Sbjct 528985 GGGTTTACACTGTTACTTTGCTTGCCTG 528958
>seq6472
Length=2227648
Score = 147 bits (162), Expect = 2e-30
Identities = 186/256 (73%), Gaps = 0/256 (0%)
Strand=Plus/Plus
Query 41098 GTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTA 41157
|||| ||||| || || |||| || ||||| || |||||||| ||||| || || || |
Sbjct 2219805 GTGAGCTGTCCTGCCAGCTGTACCAGAGATCGGGAGACATGGGCCTAGGCGTGCCTTTCA 2219864
Query 41158 ACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTG 41217
|||| || || || || ||||||||||| |||||||| ||| | || | || || |
Sbjct 2219865 ACATCGCCAGCTACGCCCTGCTCACGTACATGATTGCGCACATCACGGGCCTGAAGCCAG 2219924
Query 41218 GTGAATTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCGTTAA 41277
|||| ||||| ||||| || ||||||| |||||||||| | |||||||| ||||| | |
Sbjct 2219925 GTGACTTTGTACACACTTTGGGAGATGCACATATTTACCTGAATCACATCGAGCCACTGA 2219984
Query 41278 CAGAACAACTGACACGAAAACCTAGACCATTTCCAACGCTACTTATTAAACGCGCTGTTG 41337
| || || ||| |||| ||||| || |||| ||| ||| || ||||
Sbjct 2219985 AAATTCAGCTTCAGCGAGAACCCAGACCTTTCCCAAAGCTCAAGATTCTTCGAAAAGTTG 2220044
Query 41338 AAAACATTGATGATTT 41353
| || |||||||| ||
Sbjct 2220045 AGAAAATTGATGACTT 2220060
>seq7904
Length=13651311
Score = 113 bits (124), Expect = 4e-20
Identities = 92/109 (84%), Gaps = 2/109 (2%)
Strand=Plus/Minus
Query 43913 CAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAA 43971
||||||||||| ||||| |||||| || ||||| ||||| || ||||||||||| |||||
Sbjct 3489872 CAAGAAGTTCAGATTAC-AGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAA 3489814
Query 43972 TATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020
|| ||||| |||||||| |||||||| || || || ||||| ||||||
Sbjct 3489813 CATACATTCTGAAATGTATAGTCTTCTTATTGACACTTACATAAAAGAT 3489765
Score = 93.3 bits (102), Expect = 3e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182
|| ||||| | || || ||||| | ||||||||||| |||||||| || || |||||
Sbjct 3487731 GGTGAACGTGTCGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCA 3487672
Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242
| ||||| ||| | ||||||||||| |||||||||| | || ||||| ||||| |
Sbjct 3487671 TCGATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTT 3487612
Query 44243 ATAAGTCGTGATGA 44256
|| || | |||||
Sbjct 3487611 ATCAGCAGAGATGA 3487598
>seq10437
Length=145250
Score = 93.3 bits (102), Expect = 3e-14
Identities = 196/290 (68%), Gaps = 2/290 (1%)
Strand=Plus/Minus
Query 77394 TCCAGCCGTTCTGCTTCCAGTTCTTAACCCACTTAGTCACACCATTGATGGTGAACATGC 77453
|||| || || | |||||| | | ||| || ||||| | || ||| || || ||||| |
Sbjct 12265 TCCACCCATTTTCCTTCCAACTTTGAACACAGTTAGTTATACTATTTATAGTAAACATAC 12206
Query 77454 TGTCTGTGTAGACGACCAGCTTCTTGATTTTGTTCTCCTGAGCTTGTTGCAGTGCTTTGG 77513
||||||| || | ||||| || |||| || | ||| ||||||| | ||||||
Sbjct 12205 TGTCTGTATACAGAACCAGTTTACTGATGTTTTGAGCCTTTGCTTGTTCAATGGCTTTGC 12146
Query 77514 ATGCAGCCTGGATTTCAGCGCGCTGGTTTGTCTGTTGCCCCACAAGTCGCTCTGCAACAT 77573
| ||||| || ||||| || | |||||||||||| |||| ||||| | ||||
Sbjct 12145 AGGCAGCATGAATTTCTGCTCTTTGGTTTGTCTGTCGCCCAGGAAGTCTAATGCCTACAT 12086
Query 77574 TAAGCGGGTGATTATAACCCCAATATACGCCAATGCCAGCTC-GGGCTTGTTTCTGTCCG 77632
| | || || ||||| || |||| || || |||| ||| | | | | |
Sbjct 12085 TTAAAGGATGGCCCGGCCCCCAGTAAACGCAGATTCCTGCTCTTGGCCT-TCTACGGGCA 12027
Query 77633 TTTGATAAGCAACAGCCGTCAGTGTAGACCACCACGGCGTCACCCATGTA 77682
|| |||| ||||| ||||||||||| || || ||| ||||||||
Sbjct 12026 TTACTGGAGCAGCAGCCATCAGTGTAGACGACAACAAAGTCTCCCATGTA 11977
>seq2336
Length=9258750
Score = 86.0 bits (94), Expect = 5e-12
Identities = 70/85 (82%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 43698 GGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGG 43757
|||||||| | |||||||| ||||| | ||| || ||| ||||||| ||| | |||||||
Sbjct 5780037 GGTTTGTCATCTTTCCAATCCAATACCCTGATATTTGGAAAATGTATAAACAGGCACAGG 5780096
Query 43758 CGTCATTTTGGACAGCAGAAGAAGT 43782
| || || |||||||||||||| ||
Sbjct 5780097 CTTCCTTCTGGACAGCAGAAGAGGT 5780121
Score = 86.0 bits (94), Expect = 5e-12
Identities = 68/82 (83%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552
|||| || ||||||||||||||||| ||||| || ||||| |||||||| || ||||| |
Sbjct 5801270 AAAATCCTTTTGATTTTATGGAAAACATTTCTTTAGAAGGAAAAACAAATTTCTTTGAGA 5801329
Query 44553 AACGCGTTGGAGAATATCAGCG 44574
|||| ||| || ||||||||
Sbjct 5801330 AACGAGTTTCGGAGTATCAGCG 5801351
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397392427409620
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