Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_028099.1 Length=122522 Score E Sequences producing significant alignments: (Bits) Value seq6472 141 7e-29 seq7015 120 2e-22 >seq6472 Length=2227648 Score = 141 bits (156), Expect = 7e-29 Identities = 225/320 (70%), Gaps = 2/320 (1%) Strand=Plus/Minus Query 111563 AAATAGCAACATCCATCTTTATAGCAGGATGAGGTCTATAATTCTCCAAT-TCAAAGTCA 111621 ||| ||| | ||||| || |||| ||||| || | || || |||| | |||||| Sbjct 2220128 AAACAGCCATTTCCATTTTAATAGTTGGATGCGGATTGTACC-CTTCAATCTGAAAGTCT 2220070 Query 111622 TCAGCAACAAAATCGTCAATGCAAGCAACTCTTCGTTTAATTTTTAGTTTTGGAAAGGGG 111681 ||||| || || ||||| ||||| |||| ||| || || ||||| || || Sbjct 2220069 TCAGCTTTGAAGTCATCAATTTTCTCAACTTTTCGAAGAATCTTGAGCTTTGGGAAAGGT 2220010 Query 111682 GTAGGCTTTCGGGTAAGCTGTAATTGTAAAGGCTGTATGTGATTTAAATAAACATGCGCA 111741 | || | ||| |||||| | || | |||| |||||||| | |||| ||| ||| Sbjct 2220009 CTGGGTTCTCGCTGAAGCTGAATTTTCAGTGGCTCGATGTGATTCAGGTAAATATGTGCA 2219950 Query 111742 TCTCCTATACAATGGATCAATTCCCAAGGCTCCAAACCAGTGATGTGTGCAATCATGTAT 111801 ||||| | | || | || || | |||| || || |||||||| ||||||||||| Sbjct 2219949 TCTCCCAAAGTGTGTACAAAGTCACCTGGCTTCAGGCCCGTGATGTGCGCAATCATGTAC 2219890 Query 111802 GTGAGTAGACTGTAACTAGCAATGTTAAATGGCACACCTAGGCCCATATCTCCCGATCTT 111861 ||||| || ||| || || ||||| || ||||| ||||||||||| ||||||||||| Sbjct 2219889 GTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGCACGCCTAGGCCCATGTCTCCCGATCTC 2219830 Query 111862 TGATATAGCTGACATGATAG 111881 || || ||||| || || || Sbjct 2219829 TGGTACAGCTGGCAGGACAG 2219810 >seq7015 Length=9623085 Score = 120 bits (132), Expect = 2e-22 Identities = 122/159 (77%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 111778 CCAGTGATGTGTGCAATCATGTATGTGAGTAGACTGTAACTAGCAATGTTAAATGGCACA 111837 || |||||||| ||||||||||| |||||||| ||| || || ||||| || ||||| Sbjct 2250476 CCCGTGATGTGCGCAATCATGTACGTGAGTAGGGCGTAGCTGGCGATGTTGAAAGGCACG 2250417 Query 111838 CCTAGGCCCATATCTCCCGATCTTTGATATAGCTGACATGATAGTTTATTTTGTGACACA 111897 ||||||||||| ||||||||||| || || ||||| || || || | | | | |||| Sbjct 2250416 CCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACCACA 2250357 Query 111898 TAAAATTGACAAAGTACATGACAAGGAGGCAATGCCATC 111936 || || || || || | || || ||||||| ||||||| Sbjct 2250356 TAGAACTGGCAGAGGGCGTGGCATGGAGGCAGTGCCATC 2250318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391882908791212