Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq6583 100 3e-16 seq11237 91.5 2e-13 seq7904 82.4 8e-11 >seq6583 Length=2948085 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| |||||||||||| ||||||||| ||| || || || || || Sbjct 1871839 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 1871780 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | | ||| | |||||| ||||||||||| |||||||| || ||| Sbjct 1871779 CCAATAGGCTGAAGCAAGTTAATGTTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACA 1871720 Query 117425 ATCGT 117429 || || Sbjct 1871719 ATAGT 1871715 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || || || | ||| || ||||| |||||||| ||||| ||||||||||| Sbjct 1871839 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 1871780 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| || | ||| | |||||| ||||| || |||||||||||||||||| Sbjct 1871779 CCAATAGGCTGAAGCAAGTTAATGTTGTTACTTCCCACAAAGTTCTGAGCCAAATTCACA 1871720 Query 152149 ATCGT 152153 || || Sbjct 1871719 ATAGT 1871715 >seq11237 Length=4569836 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | || || | |||||||||||| ||| | || |||||||| Sbjct 3024436 GTGAAGATGTATCGTGGACTAGCGGAATCCTTGCCACCATGCAGTCTGGTACCAAACTGA 3024377 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| | ||||| || || ||| ||||| ||||||||||||||||| | | Sbjct 3024376 CCAATGGGCTGCAACAGGTTCAGATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 3024317 Query 152149 ATCGT 152153 || || Sbjct 3024316 ATGGT 3024312 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| || | || || | ||||||||||||| || | ||||| || || Sbjct 3024436 GTGAAGATGTATCGTGGACTAGCGGAATCCTTGCCACCATGCAGTCTGGTACCAAACTGA 3024377 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| ||| |||||||| || ||| |||||||| || |||||||| |||| | Sbjct 3024376 CCAATGGGCTGCAACAGGTTCAGATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 3024317 Query 117425 ATCGT 117429 || || Sbjct 3024316 ATGGT 3024312 >seq7904 Length=13651311 Score = 82.4 bits (90), Expect = 8e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | |||||| ||||| | ||||||||||| ||||| || ||||| Sbjct 3487598 TCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 3487657 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCG 74891 | ||| || || | || ||||| |||||||||||||| || |||||||| Sbjct 3487658 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 3487717 Query 74892 ACAAGGCGTT 74901 || | |||| Sbjct 3487718 ACGACACGTT 3487727 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547126229215200