Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq4871 100 4e-16 >seq4871 Length=5485048 Score = 100 bits (110), Expect = 4e-16 Identities = 546/868 (63%), Gaps = 9/868 (1%) Strand=Plus/Minus Query 13683 GAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTC 13742 ||||||| |||||||| || || || || || ||| | || |||||||| || ||| | Sbjct 1010740 GAAGAGGCAGAGTTTCCAATAGCATATTCTATAGTGGTTCATCACAAGATTGAAATGCTT 1010681 Query 13743 GAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCC 13802 || | || |||||||||||||| || ||||| |||| ||| | || |||||| | Sbjct 1010680 GACAGGCTGCTGAGGGCCATCTATATGCCTCAGAATTTCTATTGCATTCATGTGGACACA 1010621 Query 13803 AAGTCCGGCGA--CGAGTTCATCCGGGGCGTCTCGGCCATCGCCAGGTGCTTCCCTAACG 13860 || |||| || | || | | | | | | | |||||| || ||| ||| | Sbjct 1010620 AAATCCGAGGATTCCTATTTAGCTGCAGTGACAGG--CATCGCTTCCTGTTTCAGTAATG 1010563 Query 13861 TGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCCG 13920 | ||||| ||| || | ||||| || | || ||||| || || ||||| | Sbjct 1010562 TCTTTGTGGCCAGCCGATTGGAGAGTGTGGTTTATGCATCGTGGAGCCGGGTTCAGGCTG 1010503 Query 13921 ACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGTACCTGCTCAACC 13980 |||| | ||||||| |||||| | || | || |||| |||| || | || | Sbjct 1010502 ACCTTAACTGCATGAAGGACCTCTATGCAATGAGTGCAAACTGGAAGTACTTGATAAATC 1010443 Query 13981 TGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAAGGCCC 14040 | || || ||||| || || | || |||||||| || || || || ||||||| Sbjct 1010442 TTTGTGGTATGGATTTTCCTATTAAAACCAACCTAGAAATTGTCAGGAAGCTGAAGTTGT 1010383 Query 14041 TGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCAACCACAAGCTGCACCGCATCA 14100 | || | ||| |||||| | ||| | ||||| ||| || | | | Sbjct 1010382 TAATGGGAGAAAACAGCCTGGAAACGGAGAGGATGCCATCCCATAAAGAAGAAAGGTGGA 1010323 Query 14101 GGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTGGTCAACACCGGCAGGAACAAGGCCC 14160 ||| || | | ||| || || | || ||||| || | ||| | Sbjct 1010322 AAAAGCGGTATGAGGT---CATTAATGGAAAGCTGACAAACACAGGGACTGTCAAAATGC 1010266 Query 14161 CGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTTGCGGTCACCCGGGAGT 14220 || |||||| | || | ||| | || | || ||||||| ||||| |||||| Sbjct 1010265 TTCCTCCGCTCGAAACACCTCTTTTTTCTGGCAGTGCCTACTTTGTGGTCAGTAGGGAGT 1010206 Query 14221 TCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGCTCATGCACTGGTTCGAGGACA 14280 |||| | || || || | || | | | ||| | ||| | |||| Sbjct 1010205 ATGTGGGGTATGTACTACAGAATGAAAAACTCCAAAAGTTTATGGAGTGGGCGCAAGACA 1010146 Query 14281 CGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGTACGGGACGCCCGGGG 14340 | |||||||| || ||| | || ||||||||| | ||||| || | | | | |||||| Sbjct 1010145 CATACAGCCCTGATGAGTATCTCTGGGCCACCATCCAGAGGAT-TCCTGAAGTCCCGGGC 1010087 Query 14341 GGATCCCCGTTCA-CGTCAAGTACGACACCTCGGACATGTGGGCCAAGGTCAGGTTCGTC 14399 | | || | |||||||| || |||||| || | |||||| ||| Sbjct 1010086 TCACTTTCTGCCAGCCATAAGTACGATTTGTCTGACATGCAAGCAGTTGCCAGGTTTGTC 1010027 Query 14400 AAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTGTACCCGCCTTGCGACGGC 14459 |||||||| |||| ||||| ||| | || || |||| |||||| || ||||| || Sbjct 1010026 AAGTGGCAATACTTTGAGGGTGATGTTTCCAAGGGTGCCCCGTACCCTCCCTGCGATGGG 1009967 Query 14460 ATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTGAAGTGGCTGAAGAGCGTC 14519 ||||||| | | | | ||||| || || | || ||| |||| ||| || | || | Sbjct 1009966 GTCCACGTGCGCTCGGTGTGCATTTTTGGAGCTGGTGACTTGAACTGGATGCTGCGCAAC 1009907 Query 14520 CCGCACCTGTTCGCCAACAAGTTCGACG 14547 | ||| |||| ||||| ||||| |||| Sbjct 1009906 CACCACTTGTTTGCCAATAAGTTTGACG 1009879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658631133834240