Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq6472 161 8e-35 seq7015 138 9e-28 seq8681 113 4e-20 seq3771 113 4e-20 seq4682 100 2e-16 seq10126 98.7 8e-16 seq5171 95.1 1e-14 seq3505 82.4 6e-11 >seq6472 Length=2227648 Score = 161 bits (178), Expect = 8e-35 Identities = 165/214 (77%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 29838 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTTATCCAGGT 29897 ||||||||| |||||| || | || |||||| | ||||| || || | || || ||||| Sbjct 2220019 TGGGAAAGG-TCTGGGTTCTCGCTGAAGCTGAATTTTCAGTGGCTCGATGTGATTCAGGT 2219961 Query 29898 AGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29957 | | || || ||||||| |||| ||||| || || || | || || |||| ||| | Sbjct 2219960 AAATATGTGCATCTCCCAAAGTGTGTACAAAGTCACCTGGCTTCAGGCCCGTGATGTGCG 2219901 Query 29958 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGT 30017 | |||||||||||||| || | ||||||||||||||| || || || || || ||||||| Sbjct 2219900 CAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGCACGCCTAGGCCCATGT 2219841 Query 30018 CCCCCGACCTCTGGTAGAGCTGACACGAGAGCTC 30051 | ||||| |||||||| ||||| || || ||||| Sbjct 2219840 CTCCCGATCTCTGGTACAGCTGGCAGGACAGCTC 2219807 >seq7015 Length=9623085 Score = 138 bits (152), Expect = 9e-28 Identities = 129/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || |||||||||||||| || | ||||||||||||||| || || Sbjct 2250479 AGGCCCGTGATGTGCGCAATCATGTACGTGAGTAGGGCGTAGCTGGCGATGTTGAAAGGC 2250420 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || |||||||| ||||| |||||||| ||||| || || ||||| | || | Sbjct 2250419 ACGCCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 2250360 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 || || ||||| || | ||||||||| ||||| || ||||| || Sbjct 2250359 ACATAGAACTGGCAGAGGGCGTGGCATGGAGGCAGTGCCATCAG 2250316 Score = 114 bits (126), Expect = 1e-20 Identities = 126/168 (75%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 ||| || |||| || || || ||||||||||||||||| || || || || |||| ||| Sbjct 2246329 CATATCTCTGTATTCGGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGACCCAAGTC 2246270 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 || ||||| ||| ||| ||| ||||||||||||||| ||| || ||||| || Sbjct 2246269 CCCTTCTTCTCTGGTGGAGAACCCCAGGCTGTCCAAAAAGTCTCGGGATCCATTGGCATC 2246210 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 |||||| || || ||||| ||| ||||| || | |||||||| || Sbjct 2246209 CCAGATTTTCACTCCCTTGGAAGACAGCTCCTTAGCATTTGTGGATCC 2246162 >seq8681 Length=27971852 Score = 113 bits (124), Expect = 4e-20 Identities = 184/260 (71%), Gaps = 10/260 (4%) Strand=Plus/Minus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| || || || || || || |||||||| |||| || || || | | Sbjct 24368782 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTT 24368723 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | ||||| |||||| || || ||||||||||||||||| ||||||| |||| || || Sbjct 24368722 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAAGTCTTCTTACCCATAATCATCAGATT 24368663 Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 110557 ||| || ||| |||||||| || | |||| | ||| | || | | | || || || | Sbjct 24368662 CTGTTTACCTTCTACTGAAGAGGTTGTGGTC-ATTCTCTGGAAATATCTGAATTCATTCC 24368604 Query 110558 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 110616 || || |||| ||||| || ||||| || |||||||||||| ||||| || Sbjct 24368603 TGAG------CGGTGGCCAGGGCAGGTCCCCGTTCTTGCCGATGCCCATGTTCTGG-GAC 24368551 Query 110617 GCGGCCACGATACCGTTCAG 110636 | || ||||| | ||| || Sbjct 24368550 ACAGCGACGATGCAGTTTAG 24368531 >seq3771 Length=10901971 Score = 113 bits (124), Expect = 4e-20 Identities = 184/260 (71%), Gaps = 10/260 (4%) Strand=Plus/Minus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| || || || || || || |||||||| |||| || || || | | Sbjct 4179299 ATGAGCTCCTTCTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTT 4179240 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | ||||| |||||| || || ||||||||||||||||| ||||||| ||||||| || Sbjct 4179239 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAAGTCTTCTTACCCATAATCACCAGATT 4179180 Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 110557 ||| || ||| |||||||| || | |||| | ||| | || | | | || || || | Sbjct 4179179 CTGTTTACCTTCTACTGAAGAGGTTGTGGTC-ATTCTCTGGAAATATCTGAATTCATTCC 4179121 Query 110558 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 110616 || || |||| ||||| || || || || |||||||||||| ||||| || Sbjct 4179120 TGAG------CGGCGGCCAGGGCAGGTCCCCATTCTTGCCGATGCCCATGTTCTGG-GAC 4179068 Query 110617 GCGGCCACGATACCGTTCAG 110636 | || ||||| | ||| || Sbjct 4179067 ACAGCGACGATGCAGTTTAG 4179048 >seq4682 Length=14522853 Score = 100 bits (110), Expect = 2e-16 Identities = 181/260 (70%), Gaps = 10/260 (4%) Strand=Plus/Plus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| || || || || || | |||||||| |||| || || || | | Sbjct 6466498 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTATCTGCTGAGAACTAAATTAATTCTACCCTT 6466557 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | ||||| |||||| || | ||||||||||||||||| |||||| ||||||| || Sbjct 6466558 TAAAGGTCGATTCTTCTCAGAAATGGAGAACCAAGTCTTCTTACCCAAAATCACCAGATT 6466617 Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTCGA-AAGTGTTTAAAATCTTTGC 110557 ||| || ||| |||||||| || | |||| | ||| | || | | | || || || | Sbjct 6466618 CTGTTTACCTTCTACTGAAGAGGTTGTGGTC-ATTCTCTAGAAATATCTGAATTCATTCC 6466676 Query 110558 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 110616 || || |||| ||||| || | ||| || |||||||||||| ||||| || Sbjct 6466677 TGAG------CGGTGGCCAGGGCAGGTCCCTGTTCTTGCCGATGCCCATGTTCTGG-GAC 6466729 Query 110617 GCGGCCACGATACCGTTCAG 110636 | || ||||| | ||| || Sbjct 6466730 ACAGCGACGATGCAGTTTAG 6466749 >seq10126 Length=12978727 Score = 98.7 bits (108), Expect = 8e-16 Identities = 179/259 (69%), Gaps = 10/259 (4%) Strand=Plus/Plus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| || || || || || || |||||||| |||| || || || || | Sbjct 7685026 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTATCCTT 7685085 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | ||||| |||||| || || ||||||||||| |||| |||||||| ||||||| | Sbjct 7685086 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTACCTACCCATAATCACCAGAT- 7685144 Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 110557 || || ||| |||||||| | | |||| | ||| | || | | || || || | Sbjct 7685145 -TGTTTACCTTCTACTGAAGAAGGTGTGGTC-ATTCTCTGGAAATACCTGAATTCATTCC 7685202 Query 110558 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACG 110617 || ||| |||| ||||| || || || || ||||||||||||| | | || Sbjct 7685203 TGAG------CGGAGGCCAGGGCAGGTCCCCATTCTTGCCGATGCCCATGTTTTGGGACA 7685256 Query 110618 CGGCCACGATACCGTTCAG 110636 | || ||||| | ||| || Sbjct 7685257 CAGCGACGATGCAGTTTAG 7685275 >seq5171 Length=4515498 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| || || || || || || |||||||| |||| || || || | | Sbjct 3346892 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTT 3346833 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | |||| |||||| || || ||||||||||||||||| ||| ||| ||||||| || Sbjct 3346832 TAAAGGTTGATTCTTCTCAGGAATGGAGAACCAAGTCTTCTTACTCATAATCACCAGATT 3346773 Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCA 110530 ||| || ||| |||||||| || | ||||| Sbjct 3346772 CTGTTTACCTTCTACTGAAGAGGTTGTGGTCA 3346741 >seq3505 Length=8742144 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || || || |||||||| |||| || || || | | | ||||| |||||| || || Sbjct 2948824 TTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTTTAAAGGTCGATTCTTCTCAGGA 2948883 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||||||||| ||||||| ||||||| ||||| || ||| Sbjct 2948884 ATGGAGAACCAAGTCTTCTTACCCATAATCACCAGATTCTGTTTACCT 2948931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406245411159408