Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq6460 111 1e-19 seq2558 109 3e-19 >seq6460 Length=10151297 Score = 111 bits (122), Expect = 1e-19 Identities = 158/219 (72%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 34493 GCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGT 34552 ||||||||| || || ||| ||| || || ||||| || ||||| || || || | | Sbjct 3934078 GCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCAT 3934137 Query 34553 CTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGT 34612 |||| || ||||| ||||||||||| | | |||| ||||| || || | |||||||||| Sbjct 3934138 CTTCCAGCTGTTTGCCGGCAAATATCAGATGCTGCTGGTCAGGTGGGATACCCTCCTTGT 3934197 Query 34613 CTGTGATCTTTTGTTTTAACGAT--AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTAT 34670 | ||| |||||| || || ||| ||||| | ||| || || | ||| || Sbjct 3934198 GT-TGA-ATTTTGTCTTTGTCATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGAT 3934255 Query 34671 CGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 ||||| || || | || |||||||| ||||||||||| Sbjct 3934256 GGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTT 3934294 >seq2558 Length=10987700 Score = 109 bits (120), Expect = 3e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| |||| || ||||||||| || | ||| ||| || || ||||| || ||||| Sbjct 486484 GCCACCTCGCAGGGGCAACACCAGGTGCGGGGTGGACTCTTTGTGGATGTTGTAGTCTGA 486425 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || | | ||||| || ||||| ||||||||||| | |||||| ||||| || || Sbjct 486424 GAGAGTGTGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGG 486365 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | |||||||||||| ||| ||| | ||| ||| | ||| ||||| | ||| | Sbjct 486364 GATACCCTCCTTGTCT-TGAATTTTGGCTTTGACGTTCTCAATAGTGTCACTGGGCTCGA 486306 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 | || | ||| || ||||| || || | || || ||| ||||||||||| Sbjct 486305 CCTCAAGGGTGATGGTTTTGCCCGTGAGGGTCTTTGTAAAGATCTGCATGTT 486254 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314679259393892