Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201
5-03-12] 13,124 sequences; 2,970,124,662 total letters
Query= NC_029132.1
Length=140122
Score E
Sequences producing significant alignments: (Bits) Value
seq6472 196 4e-45
seq7015 165 7e-36
>seq6472
Length=2227648
Score = 196 bits (216), Expect = 4e-45
Identities = 241/327 (74%), Gaps = 2/327 (1%)
Strand=Plus/Plus
Query 34628 GAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAAC 34687
||||||||||||||||| || || |||||||||||||||| |||| ||||| ||||||
Sbjct 2219807 GAGCTGTCCTGCCAGCTGTACCAGAGATCGGGAGACATGGGCCTAGGCGTGCCTTTCAAC 2219866
Query 34688 ATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGG 34747
|| || || ||||| ||||||||||||||||| || || || ||| || || ||
Sbjct 2219867 ATCGCCAGCTACGCCCTGCTCACGTACATGATTGCGCACATCACGGGCCTGAAGCCAGGT 2219926
Query 34748 GAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGG 34807
|| | || || || ||||| ||||| ||||| |||||||| |||||||||| ||
Sbjct 2219927 GACTTTGTACACACTTTGGGAGATGCACATATTTACCTGAATCACATCGAGCCACTGAAA 2219986
Query 34808 ATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAATTATTCGAGCCGTCACC 34867
|| ||||| || ||||| ||| |||| ||||| ||||||| ||| ||||| ||
Sbjct 2219987 ATTCAGCTTCAGCGAGAACCCAGACCTTTCCCAAAGCTCAAGATTCTTCGAAAAGTTGAG 2220046
Query 34868 TCAATCGATGACTTTAGGAGC-GAGGACTTCGTGTTGGAAGGGTACCGGCCGCACTCGGC 34926
||| |||||||| | ||| || ||||| | | ||||||||| ||||| | |
Sbjct 2220047 AAAATTGATGACTTCA-AAGCTGAAGACTTTCAGATTGAAGGGTACAATCCGCATCCAAC 2220105
Query 34927 CCTGAAGATGGAGTTGGCGGTGTAGGG 34953
| || ||||| |||| || |||||
Sbjct 2220106 TATTAAAATGGAAATGGCTGTTTAGGG 2220132
Score = 196 bits (216), Expect = 4e-45
Identities = 241/327 (74%), Gaps = 2/327 (1%)
Strand=Plus/Minus
Query 6392 CCCTACACCGCCAACTCCATCTTCAGGGCCGAGTGCGGCCGGTACCCTTCCAACACGAAG 6451
||||| || |||| ||||| || | | | ||||| ||||||||| | | |||
Sbjct 2220132 CCCTAAACAGCCATTTCCATTTTAATAGTTGGATGCGGATTGTACCCTTCAATCTGAAAG 2220073
Query 6452 TCCTC-GCTCCTAAAGTCATCGATTGAGGTGACGGCTCGAATAATTTTGAGCTGGGGGAA 6510
|| || ||| | |||||||| ||| || ||||| ||| ||||||| |||||
Sbjct 2220072 TCTTCAGCTT-TGAAGTCATCAATTTTCTCAACTTTTCGAAGAATCTTGAGCTTTGGGAA 2220014
Query 6511 CGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAGATATG 6570
|||| ||| ||||| || ||||| || || |||||||||| |||||||| |||||
Sbjct 2220013 AGGTCTGGGTTCTCGCTGAAGCTGAATTTTCAGTGGCTCGATGTGATTCAGGTAAATATG 2219954
Query 6571 CGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGAGCGATCAT 6630
||||| ||||| || || || | || || || || ||| || || || |||||
Sbjct 2219953 TGCATCTCCCAAAGTGTGTACAAAGTCACCTGGCTTCAGGCCCGTGATGTGCGCAATCAT 2219894
Query 6631 GTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTCCCGA 6690
|||||||||||| ||||| || || |||||||| ||||| |||| ||||||||||||||
Sbjct 2219893 GTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGCACGCCTAGGCCCATGTCTCCCGA 2219834
Query 6691 TCGTTGATAGAGCTGGCAGGACAGCTC 6717
|| || || |||||||||||||||||
Sbjct 2219833 TCTCTGGTACAGCTGGCAGGACAGCTC 2219807
>seq7015
Length=9623085
Score = 165 bits (182), Expect = 7e-36
Identities = 133/161 (83%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624
||||| ||||||||||| || || || |||||| |||||||||| ||||| || | |||
Sbjct 2250307 GATCTTCCTCTGATGGCACTGCCTCCATGCCACGCCCTCTGCCAGTTCTATGTGGTGAAC 2250366
Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684
| ||||||||||||||||| || || |||||||||||||||| |||| ||||| |||
Sbjct 2250367 AGTGAGCTGTCCTGCCAGCTGTACCAGAGATCGGGAGACATGGGCCTAGGCGTGCCTTTC 2250426
Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725
||||| || || ||||| || |||||||||||||| || ||
Sbjct 2250427 AACATCGCCAGCTACGCCCTACTCACGTACATGATTGCGCA 2250467
Score = 165 bits (182), Expect = 7e-36
Identities = 133/161 (83%), Gaps = 0/161 (0%)
Strand=Plus/Minus
Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679
|| || |||||||||||||| || ||||| || || |||||||| ||||| |||| |||
Sbjct 2250467 TGCGCAATCATGTACGTGAGTAGGGCGTAGCTGGCGATGTTGAAAGGCACGCCTAGGCCC 2250408
Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739
||||||||||||| || || ||||||||||||||||| | ||| | || ||||| |||
Sbjct 2250407 ATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACCACATAGAACTGG 2250348
Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780
||||||| |||||| || || || ||||||||||| |||||
Sbjct 2250347 CAGAGGGCGTGGCATGGAGGCAGTGCCATCAGAGGAAGATC 2250307
Score = 107 bits (118), Expect = 2e-18
Identities = 116/154 (75%), Gaps = 0/154 (0%)
Strand=Plus/Plus
Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352
|||| || | |||||||| || ||| ||| ||||| |||||||| || | || || |
Sbjct 2246166 CCACAAATGCTAAGGAGCTGTCTTCCAAGGGAGTGAAAATCTGGGATGCCAATGGATCCC 2246225
Query 34353 GAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCT 34412
|||||||| |||||| | ||||||| | | | || || || |||||||| || || |
Sbjct 2246226 GAGACTTTTTGGACAGCCTGGGGTTCTCCACCAGAGAAGAAGGGGACTTGGGTCCAGTTT 2246285
Query 34413 ACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446
| || ||||||||||| || |||||||| || ||
Sbjct 2246286 ATGGCTTCCAGTGGAGGCATTTTGGGGCCGAATA 2246319
Score = 107 bits (118), Expect = 2e-18
Identities = 116/154 (75%), Gaps = 0/154 (0%)
Strand=Plus/Minus
Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958
|| || |||||||| || ||||||||||| || || || || |||||||| || || ||
Sbjct 2246319 TATTCGGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGACCCAAGTCCCCTTCTTCT 2246260
Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018
| | | ||||||| | |||||| ||||||||| || || | || |||||||| |||
Sbjct 2246259 CTGGTGGAGAACCCCAGGCTGTCCAAAAAGTCTCGGGATCCATTGGCATCCCAGATTTTC 2246200
Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052
|| ||| ||| || |||||||| | || ||||
Sbjct 2246199 ACTCCCTTGGAAGACAGCTCCTTAGCATTTGTGG 2246166
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448188862553280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |