Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq6472 196 4e-45 seq7015 165 7e-36 >seq6472 Length=2227648 Score = 196 bits (216), Expect = 4e-45 Identities = 241/327 (74%), Gaps = 2/327 (1%) Strand=Plus/Plus Query 34628 GAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAAC 34687 ||||||||||||||||| || || |||||||||||||||| |||| ||||| |||||| Sbjct 2219807 GAGCTGTCCTGCCAGCTGTACCAGAGATCGGGAGACATGGGCCTAGGCGTGCCTTTCAAC 2219866 Query 34688 ATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGGG 34747 || || || ||||| ||||||||||||||||| || || || ||| || || || Sbjct 2219867 ATCGCCAGCTACGCCCTGCTCACGTACATGATTGCGCACATCACGGGCCTGAAGCCAGGT 2219926 Query 34748 GAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCGG 34807 || | || || || ||||| ||||| ||||| |||||||| |||||||||| || Sbjct 2219927 GACTTTGTACACACTTTGGGAGATGCACATATTTACCTGAATCACATCGAGCCACTGAAA 2219986 Query 34808 ATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAATTATTCGAGCCGTCACC 34867 || ||||| || ||||| ||| |||| ||||| ||||||| ||| ||||| || Sbjct 2219987 ATTCAGCTTCAGCGAGAACCCAGACCTTTCCCAAAGCTCAAGATTCTTCGAAAAGTTGAG 2220046 Query 34868 TCAATCGATGACTTTAGGAGC-GAGGACTTCGTGTTGGAAGGGTACCGGCCGCACTCGGC 34926 ||| |||||||| | ||| || ||||| | | ||||||||| ||||| | | Sbjct 2220047 AAAATTGATGACTTCA-AAGCTGAAGACTTTCAGATTGAAGGGTACAATCCGCATCCAAC 2220105 Query 34927 CCTGAAGATGGAGTTGGCGGTGTAGGG 34953 | || ||||| |||| || ||||| Sbjct 2220106 TATTAAAATGGAAATGGCTGTTTAGGG 2220132 Score = 196 bits (216), Expect = 4e-45 Identities = 241/327 (74%), Gaps = 2/327 (1%) Strand=Plus/Minus Query 6392 CCCTACACCGCCAACTCCATCTTCAGGGCCGAGTGCGGCCGGTACCCTTCCAACACGAAG 6451 ||||| || |||| ||||| || | | | ||||| ||||||||| | | ||| Sbjct 2220132 CCCTAAACAGCCATTTCCATTTTAATAGTTGGATGCGGATTGTACCCTTCAATCTGAAAG 2220073 Query 6452 TCCTC-GCTCCTAAAGTCATCGATTGAGGTGACGGCTCGAATAATTTTGAGCTGGGGGAA 6510 || || ||| | |||||||| ||| || ||||| ||| ||||||| ||||| Sbjct 2220072 TCTTCAGCTT-TGAAGTCATCAATTTTCTCAACTTTTCGAAGAATCTTGAGCTTTGGGAA 2220014 Query 6511 CGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAGATATG 6570 |||| ||| ||||| || ||||| || || |||||||||| |||||||| ||||| Sbjct 2220013 AGGTCTGGGTTCTCGCTGAAGCTGAATTTTCAGTGGCTCGATGTGATTCAGGTAAATATG 2219954 Query 6571 CGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGAGCGATCAT 6630 ||||| ||||| || || || | || || || || ||| || || || ||||| Sbjct 2219953 TGCATCTCCCAAAGTGTGTACAAAGTCACCTGGCTTCAGGCCCGTGATGTGCGCAATCAT 2219894 Query 6631 GTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTCCCGA 6690 |||||||||||| ||||| || || |||||||| ||||| |||| |||||||||||||| Sbjct 2219893 GTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGCACGCCTAGGCCCATGTCTCCCGA 2219834 Query 6691 TCGTTGATAGAGCTGGCAGGACAGCTC 6717 || || || ||||||||||||||||| Sbjct 2219833 TCTCTGGTACAGCTGGCAGGACAGCTC 2219807 >seq7015 Length=9623085 Score = 165 bits (182), Expect = 7e-36 Identities = 133/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| ||||||||||| || || || |||||| |||||||||| ||||| || | ||| Sbjct 2250307 GATCTTCCTCTGATGGCACTGCCTCCATGCCACGCCCTCTGCCAGTTCTATGTGGTGAAC 2250366 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 | ||||||||||||||||| || || |||||||||||||||| |||| ||||| ||| Sbjct 2250367 AGTGAGCTGTCCTGCCAGCTGTACCAGAGATCGGGAGACATGGGCCTAGGCGTGCCTTTC 2250426 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || ||||| || |||||||||||||| || || Sbjct 2250427 AACATCGCCAGCTACGCCCTACTCACGTACATGATTGCGCA 2250467 Score = 165 bits (182), Expect = 7e-36 Identities = 133/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || |||||||||||||| || ||||| || || |||||||| ||||| |||| ||| Sbjct 2250467 TGCGCAATCATGTACGTGAGTAGGGCGTAGCTGGCGATGTTGAAAGGCACGCCTAGGCCC 2250408 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||||||||||| || || ||||||||||||||||| | ||| | || ||||| ||| Sbjct 2250407 ATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACCACATAGAACTGG 2250348 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 ||||||| |||||| || || || ||||||||||| ||||| Sbjct 2250347 CAGAGGGCGTGGCATGGAGGCAGTGCCATCAGAGGAAGATC 2250307 Score = 107 bits (118), Expect = 2e-18 Identities = 116/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 |||| || | |||||||| || ||| ||| ||||| |||||||| || | || || | Sbjct 2246166 CCACAAATGCTAAGGAGCTGTCTTCCAAGGGAGTGAAAATCTGGGATGCCAATGGATCCC 2246225 Query 34353 GAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCT 34412 |||||||| |||||| | ||||||| | | | || || || |||||||| || || | Sbjct 2246226 GAGACTTTTTGGACAGCCTGGGGTTCTCCACCAGAGAAGAAGGGGACTTGGGTCCAGTTT 2246285 Query 34413 ACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 | || ||||||||||| || |||||||| || || Sbjct 2246286 ATGGCTTCCAGTGGAGGCATTTTGGGGCCGAATA 2246319 Score = 107 bits (118), Expect = 2e-18 Identities = 116/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || |||||||| || ||||||||||| || || || || |||||||| || || || Sbjct 2246319 TATTCGGCCCCAAAATGCCTCCACTGGAAGCCATAAACTGGACCCAAGTCCCCTTCTTCT 2246260 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | | ||||||| | |||||| ||||||||| || || | || |||||||| ||| Sbjct 2246259 CTGGTGGAGAACCCCAGGCTGTCCAAAAAGTCTCGGGATCCATTGGCATCCCAGATTTTC 2246200 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 || ||| ||| || |||||||| | || |||| Sbjct 2246199 ACTCCCTTGGAAGACAGCTCCTTAGCATTTGTGG 2246166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448188862553280