Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq6460 102 7e-17 seq2558 93.3 4e-14 >seq6460 Length=10151297 Score = 102 bits (112), Expect = 7e-17 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 39073 AACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCA 39132 ||||||| || || ||| |||||| || || || || || | || || || | || Sbjct 3934080 AACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCT 3934139 Query 39133 TCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTC 39191 || ||||||||||| |||||||| ||| |||||||||| |||||| | | ||| |||| Sbjct 3934140 TCCAGCTGTTTGCCGGCAAATATCAGATGCTGCTGGTCAGGTGGG-ATACCCTCCTTGTG 3934198 Query 39192 CATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACT 39251 ||||| | |||| || | | || || || | ||| || || | ||||| | Sbjct 3934199 TTGAATTTTGTCTTTGTCATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGT 3934258 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTACG 39291 ||| ||||| || || || |||||||| ||||| ||| || Sbjct 3934259 TTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTTTGCG 3934298 >seq2558 Length=10987700 Score = 93.3 bits (102), Expect = 4e-14 Identities = 162/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 ||| |||| | | | ||||||| || | ||| |||||| || || || || || | Sbjct 486484 GCCACCTCGCAGGGGCAACACCAGGTGCGGGGTGGACTCTTTGTGGATGTTGTAGTCTGA 486425 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGG 39175 || || | | || || ||||||||||| |||||||| |||||||||||||| ||||| Sbjct 486424 GAGAGTGTGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGG 486365 Query 39176 GCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCA 39235 | | | ||| ||||| ||||| ||||| || | | || || || | ||| | Sbjct 486364 G-ATACCCTCCTTGTCTTGAATTTTGGCTTTGACGTTCTCAATAGTGTCACTGGGCTCGA 486306 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTT 39288 | || | ||||| |||| ||||| || || || |||||| ||||| ||| Sbjct 486305 CCTCAAGGGTGATGGTTTTGCCCGTGAGGGTCTTTGTAAAGATCTGCATGTTT 486253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429476894718212