Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq6460 131 1e-25 seq2558 127 1e-24 seq12126 123 2e-23 seq6459 123 2e-23 seq4805 118 7e-22 seq5126 116 3e-21 seq1 109 4e-19 seq5149 105 5e-18 seq11570 104 2e-17 seq7115 95.1 8e-15 seq4138 95.1 8e-15 seq2780 89.7 3e-13 seq6583 84.2 1e-11 >seq6460 Length=10151297 Score = 131 bits (144), Expect = 1e-25 Identities = 151/201 (75%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || || ||||||||||| ||||| ||||| || || || || || Sbjct 3934294 AACATGCAGATCTTTGTGAAGACCCTCACGGGCAAAACCATCACCCTTGAGGTCGAGCCC 3934235 Query 23668 ACGGACACTGTTGAAATATTA-AAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| |||| | || | ||| | |||||| |||| || ||| | || || || Sbjct 3934234 AGTGACACCATTGAGA-ATGACAAAGACAAAATTCAACACAAGGAGGGTATCCCACCTGA 3934176 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || |||| | | ||||||||||||||||| |||||||| | |||||| | || || Sbjct 3934175 CCAGCAGCATCTGATATTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGACTA 3934116 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || ||||||||||| Sbjct 3934115 CAACATCCAGAAAGAGTCCAC 3934095 >seq2558 Length=10987700 Score = 127 bits (140), Expect = 1e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || ||||||||||| ||||| ||||| || || || || || Sbjct 486254 AACATGCAGATCTTTACAAAGACCCTCACGGGCAAAACCATCACCCTTGAGGTCGAGCCC 486313 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | |||||| |||| | | ||| |||||| ||||| || ||| | || || || Sbjct 486314 AGTGACACTATTGAGAACGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGAC 486373 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || |||||| | ||||||||||||||||| |||||||| | | |||| | || ||| Sbjct 486374 CAGCAGCGTCTGATATTTGCCGGCAAACAGCTGGAAGATGGCCACACTCTCTCAGACTAC 486433 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || ||||||||||| Sbjct 486434 AACATCCACAAAGAGTCCAC 486453 >seq12126 Length=7615049 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| |||||||| ||||| || || ||||| ||||| ||||| || Sbjct 7457745 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 7457804 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | |||| |||| || || || || ||||| | || || ||| Sbjct 7457805 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 7457864 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | || || ||||| ||||| ||||||||||| | ||| ||||| || ||| Sbjct 7457865 CAGCAAAGATTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 7457924 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || || ||||| ||||| || | ||| | || || || Sbjct 7457925 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAG 7457962 >seq6459 Length=16685579 Score = 123 bits (136), Expect = 2e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| |||||||| ||||| || || ||||| ||||| ||||| || Sbjct 968730 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 968789 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | |||| |||| || || || || ||||| | || || ||| Sbjct 968790 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 968849 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | || || ||||| ||||| ||||||||||| | ||| ||||| || ||| Sbjct 968850 CAGCAAAGATTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 968909 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || || ||||| ||||| || | ||| | || || || Sbjct 968910 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAG 968947 >seq4805 Length=5228064 Score = 118 bits (130), Expect = 7e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| |||||||| ||||| || || ||||| ||||| ||||| || Sbjct 4473410 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 4473469 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | |||| |||| || || || || ||||| | || || ||| Sbjct 4473470 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 4473529 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| ||||| ||||||||||| | ||| ||||| || ||| Sbjct 4473530 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 4473589 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || || ||||| ||||| || | ||| | || || || Sbjct 4473590 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAG 4473627 >seq5126 Length=8658521 Score = 116 bits (128), Expect = 3e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || ||||| ||||| || || ||| Sbjct 3006077 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCCAGC 3006136 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || |||| | || ||||| ||||| | || || || || Sbjct 3006137 GACACCATTGAGAATGTCAAGGCAAAGA-TTCAGGACAAGGAAGGCATCCCTCCTGACCA 3006195 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| || ||||| |||||||| | |||||| | |||||||| Sbjct 3006196 GCAGAGGTTGATCTTTGCTGGGAAACAGCTGGAAGATGGACGCACCCTGTCTGATTACAA 3006255 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || ||||||||||| Sbjct 3006256 CATCCAGAAAGAGTCCAC 3006273 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || || || || ||||| || || ||| Sbjct 3005849 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATTACCCTCGAGGTCGAGCCCAGC 3005908 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || |||| | | ||||| ||||| | || || || || Sbjct 3005909 GACACCATCGAGAATGTCAAGGCAAAGA-TCCAAGACAAGGAAGGCATCCCTCCTGACCA 3005967 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| || || || |||||||| | ||||| | || ||||| Sbjct 3005968 GCAGAGGTTGATCTTTGCTGGAAAGCAGCTGGAAGATGGGCGCACGCTGTCTGACTACAA 3006027 Query 23790 CATACAAAAAGAGTCCACATTACA 23813 ||| || ||||||||||| || || Sbjct 3006028 CATCCAGAAAGAGTCCACCTTGCA 3006051 >seq1 Length=19716903 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| |||||||| ||||| || || ||||| ||||| ||||| || Sbjct 12236907 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 12236848 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || |||| |||| || || || | ||||| | || || ||| Sbjct 12236847 TCGGATACGACAGAAAATGTAAAGGCCAAGATCCAGGATGAGGAAGGAATTCCTCCTGAT 12236788 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | || || ||||| ||||| ||||||||||| | | | ||||| || ||| Sbjct 12236787 CAGCAAAGATTGATCTTTGCTGGCAAGCAACTGGAAGATGGATGTACTTTGTCTGACTAC 12236728 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || || ||||| ||||| || | ||| | || || || Sbjct 12236727 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAG 12236690 >seq5149 Length=2416856 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| |||||||| ||||| || || ||||| ||| | ||||| || Sbjct 1496344 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCCAGGTTGAACCC 1496285 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| | |||| |||| || || || || ||||| | || || ||| Sbjct 1496284 TCGGATATGACAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 1496225 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| ||||| ||||||||||| | ||| ||||| || ||| Sbjct 1496224 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 1496165 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || || ||||| ||||| || | ||| | || || || Sbjct 1496164 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAG 1496127 >seq11570 Length=13276302 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||| | || || || ||||||||||| || || ||||| || || || || ||| Sbjct 889657 ATGCAGCTCTTTGTGAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 889598 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||| ||| | || ||| |||||| ||||| || ||| | || || || || Sbjct 889597 TACACCACTGAGAATTTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGACCAG 889538 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||| | | |||||||| ||||| || ||||| || | |||||| | || |||||| Sbjct 889537 CAGCATCTGATATTTGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTCTCAGACTACAAC 889478 Query 23791 ATACAAAAAGAGTCCAC 23807 || |||||| ||||||| Sbjct 889477 ATCCAAAAACAGTCCAC 889461 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||| | |||||||| ||||| | || ||||| || || | ||| || Sbjct 11749151 AAAATGCAGATTTTCATGAAAACCCTTACGGGGCAGACCATCACCCTTGAGGCTGAACCC 11749092 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | |||| |||| || || || || ||||| | || || ||| Sbjct 11749091 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGAGAAGGAAGGAATTCCTCCTGAT 11749032 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| ||||| ||||||||||| | ||| ||||| || ||| Sbjct 11749031 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 11748972 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || || ||||| ||||| || | ||| | || || || Sbjct 11748971 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAG 11748934 >seq7115 Length=1795964 Score = 95.1 bits (104), Expect = 8e-15 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 |||||||||||||| || |||||||| | ||| || || ||||| || || ||||| || Sbjct 163860 AAAATGCAGATTTTTGTGAAAACCCTAAGGGGGAAGACTATCACCCTTGAGGTTGAACCC 163919 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || || | |||| |||| || || || || ||||| | || || ||| Sbjct 163920 TCAGATACGGCAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 163979 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| ||| | ||||||||||| | ||| ||||| || | | Sbjct 163980 CAGCAAAGACTGATCTTTGCTGGCGAGCAACTGGAAGATGGACGTACTTTGTCTGACTGC 164039 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| ||||| ||||| || Sbjct 164040 AACATTCAAAAGGAGTCTAC 164059 >seq4138 Length=9750826 Score = 95.1 bits (104), Expect = 8e-15 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| |||||||| | ||| || || ||||| ||||| ||||| || Sbjct 3987800 AAAATGCAGATTTTCGTGAAAACCCTTATGGGGAAGACCATCACCCTCGAGGTTGAAACC 3987859 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | |||| |||| || || || || ||||| | || || | | Sbjct 3987860 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGCT 3987919 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | || |||| ||||| ||||||||||| | | | ||||| || ||| Sbjct 3987920 CAGCAAAGAGGGATCTTTGTTGGCAAGCAACTGGAAGATGGATGGACTTTGTCTGACTAC 3987979 Query 23788 AACATACAAAAAGAGTCCAC 23807 || || ||||| ||||| || Sbjct 3987980 AATATTCAAAAGGAGTCTAC 3987999 >seq2780 Length=8382912 Score = 89.7 bits (98), Expect = 3e-13 Identities = 151/218 (69%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| | |||||| || || || || ||||| ||||| | ||| || Sbjct 5628423 AAAATGCAGATTTTCGTGATAACCCTTACAGGGAAGACCATCACCCTCGAGGCTGAACCC 5628364 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 ||||||| | |||| || | || || | || ||||| | || || | | Sbjct 5628363 TCGGACACAATAGAAAATGTATAGGCCAAGATCCAGGTTAAGGAAGGAATTCCTCCTGGT 5628304 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || |||| ||||| || |||||||| | ||| ||||| || ||| Sbjct 5628303 CAGCAGAGACTGATCTTTGTTGGCAAGCAGCTGGAAGATGGACGTACTTTGTCTGACTAC 5628244 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || || ||||| |||| || | ||||| || || || Sbjct 5628243 AATATTCAAAA--AGTCTACTCTTCATTTTGTGTTGAG 5628208 >seq6583 Length=2948085 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| ||||| || || |||||||| || || | ||| Sbjct 72838 ATGCAGATCTTTGTGAAGACCCTTACGGGCAAGACCATCACTCTTGAGGTCAAGCCCAGT 72779 Query 23671 GACACTGTTGAA-ATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| ||| || | ||| | |||| || ||||| || ||| | || || || || Sbjct 72778 GACACCAATGAGGATGTCAAAGCCAAAA-TTCAAGACAAGGAGGGTATCCCACCTGACCA 72720 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | | ||| ||||||||||||| |||| || | || ||| | || ||| | Sbjct 72719 GCAGCATCTGATACTTGCCGGCAAACAGCTGGGGGATGGCCGAACTCTCTCAGACTACGA 72660 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||||||||| Sbjct 72659 CATCTGGAAAGAGTCCAC 72642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337955535786992