Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201
5-03-12] 13,124 sequences; 2,970,124,662 total letters
Query= NC_030394.2
Length=126965
Score E
Sequences producing significant alignments: (Bits) Value
seq6472 170 2e-37
seq7015 140 3e-28
seq8681 109 4e-19
seq3771 109 4e-19
seq4682 95.1 1e-14
seq5171 86.0 5e-12
seq3505 82.4 6e-11
>seq6472
Length=2227648
Score = 170 bits (188), Expect = 2e-37
Identities = 167/214 (78%), Gaps = 1/214 (0%)
Strand=Plus/Minus
Query 29610 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGT 29669
||||||||| |||||| || | || |||||||| |||| || || | ||| | ||||
Sbjct 2220019 TGGGAAAGG-TCTGGGTTCTCGCTGAAGCTGAATTTTCAGTGGCTCGATGTGATTCAGGT 2219961
Query 29670 AGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29729
| | || |||||||||| ||||| ||||| || || || | || || |||| ||| |
Sbjct 2219960 AAATATGTGCATCTCCCAAAGTGTGTACAAAGTCACCTGGCTTCAGGCCCGTGATGTGCG 2219901
Query 29730 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGT 29789
| |||||||||||||| || | ||||||||||||||| || ||||| || || |||||||
Sbjct 2219900 CAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGCACGCCTAGGCCCATGT 2219841
Query 29790 CCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTC 29823
| || || |||||||| |||||||| || |||||
Sbjct 2219840 CTCCCGATCTCTGGTACAGCTGGCAGGACAGCTC 2219807
>seq7015
Length=9623085
Score = 140 bits (154), Expect = 3e-28
Identities = 130/165 (79%), Gaps = 0/165 (0%)
Strand=Plus/Minus
Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773
|| || |||| ||| || |||||||||||||| || | ||||||||||||||| || |||
Sbjct 2250479 AGGCCCGTGATGTGCGCAATCATGTACGTGAGTAGGGCGTAGCTGGCGATGTTGAAAGGC 2250420
Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833
|| || || |||||||| || || |||||||| |||||||| || ||||| | || |
Sbjct 2250419 ACGCCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 2250360
Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878
|| || ||||| || | ||| ||||| ||||| || ||||| |||
Sbjct 2250359 ACATAGAACTGGCAGAGGGCGTGGCATGGAGGCAGTGCCATCAGA 2250315
Score = 102 bits (112), Expect = 7e-17
Identities = 110/146 (75%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076
||||||||||||||||| || || || || |||| ||| || ||||| ||| |||
Sbjct 2246307 AAATGCCTCCACTGGAAGCCATAAACTGGACCCAAGTCCCCTTCTTCTCTGGTGGAGAAC 2246248
Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136
||| ||||||||||||||| ||| || ||||| |||||||| || || |||||
Sbjct 2246247 CCCAGGCTGTCCAAAAAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAA 2246188
Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162
|| ||||| || | |||||||| ||
Sbjct 2246187 GACAGCTCCTTAGCATTTGTGGATCC 2246162
>seq8681
Length=27971852
Score = 109 bits (120), Expect = 4e-19
Identities = 183/260 (70%), Gaps = 10/260 (4%)
Strand=Plus/Minus
Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321
||||||||| || || || || || || |||||||| |||| || | || | |
Sbjct 24368782 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTT 24368723
Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381
| ||||| |||||| || || ||||||||||||||||| ||||||| |||| || ||
Sbjct 24368722 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAAGTCTTCTTACCCATAATCATCAGATT 24368663
Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 114440
||| |||||| | ||||| || | |||| | ||| | || | | | || || ||
Sbjct 24368662 CTGTTTACCTTCTACTGAAGAGGTTGTGGTC-ATTCTCTGGAAATATCTGAATTCATT-- 24368606
Query 114441 AAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 114499
|| | ||| |||| ||||| || ||||| || |||||||||||| ||||| ||
Sbjct 24368605 ----CCTGAGCGGTGGCCAGGGCAGGTCCCCGTTCTTGCCGATGCCCATGTTCTGG-GAC 24368551
Query 114500 GCTGCCACGATACCGTTCAG 114519
| || ||||| | ||| ||
Sbjct 24368550 ACAGCGACGATGCAGTTTAG 24368531
>seq3771
Length=10901971
Score = 109 bits (120), Expect = 4e-19
Identities = 183/260 (70%), Gaps = 10/260 (4%)
Strand=Plus/Minus
Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321
||||||||| || || || || || || |||||||| |||| || | || | |
Sbjct 4179299 ATGAGCTCCTTCTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTT 4179240
Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381
| ||||| |||||| || || ||||||||||||||||| ||||||| ||||||| ||
Sbjct 4179239 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAAGTCTTCTTACCCATAATCACCAGATT 4179180
Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 114440
||| |||||| | ||||| || | |||| | ||| | || | | | || || ||
Sbjct 4179179 CTGTTTACCTTCTACTGAAGAGGTTGTGGTC-ATTCTCTGGAAATATCTGAATTCATT-- 4179123
Query 114441 AAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 114499
|| | ||| |||| ||||| || || || || |||||||||||| ||||| ||
Sbjct 4179122 ----CCTGAGCGGCGGCCAGGGCAGGTCCCCATTCTTGCCGATGCCCATGTTCTGG-GAC 4179068
Query 114500 GCTGCCACGATACCGTTCAG 114519
| || ||||| | ||| ||
Sbjct 4179067 ACAGCGACGATGCAGTTTAG 4179048
>seq4682
Length=14522853
Score = 95.1 bits (104), Expect = 1e-14
Identities = 180/260 (69%), Gaps = 10/260 (4%)
Strand=Plus/Plus
Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321
||||||||| || || || || || | |||||||| |||| || | || | |
Sbjct 6466498 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTATCTGCTGAGAACTAAATTAATTCTACCCTT 6466557
Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381
| ||||| |||||| || | ||||||||||||||||| |||||| ||||||| ||
Sbjct 6466558 TAAAGGTCGATTCTTCTCAGAAATGGAGAACCAAGTCTTCTTACCCAAAATCACCAGATT 6466617
Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGGCTCGA-AAGTGTTTAAAATCTTTGC 114440
||| |||||| | ||||| || | |||| | ||| | || | | | || || ||
Sbjct 6466618 CTGTTTACCTTCTACTGAAGAGGTTGTGGTC-ATTCTCTAGAAATATCTGAATTCATT-- 6466674
Query 114441 AAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 114499
|| | ||| |||| ||||| || | ||| || |||||||||||| ||||| ||
Sbjct 6466675 ----CCTGAGCGGTGGCCAGGGCAGGTCCCTGTTCTTGCCGATGCCCATGTTCTGG-GAC 6466729
Query 114500 GCTGCCACGATACCGTTCAG 114519
| || ||||| | ||| ||
Sbjct 6466730 ACAGCGACGATGCAGTTTAG 6466749
>seq5171
Length=4515498
Score = 86.0 bits (94), Expect = 5e-12
Identities = 110/152 (72%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321
||||||||| || || || || || || |||||||| |||| || | || | |
Sbjct 3346892 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTT 3346833
Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381
| |||| |||||| || || ||||||||||||||||| ||| ||| ||||||| ||
Sbjct 3346832 TAAAGGTTGATTCTTCTCAGGAATGGAGAACCAAGTCTTCTTACTCATAATCACCAGATT 3346773
Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCA 114413
||| |||||| | ||||| || | |||||
Sbjct 3346772 CTGTTTACCTTCTACTGAAGAGGTTGTGGTCA 3346741
>seq3505
Length=8742144
Score = 82.4 bits (90), Expect = 6e-11
Identities = 83/108 (77%), Gaps = 0/108 (0%)
Strand=Plus/Plus
Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343
|| || || |||||||| |||| || | || | | | ||||| |||||| || ||
Sbjct 2948824 TTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTTTAAAGGTCGATTCTTCTCAGGA 2948883
Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391
||||||||||||||||| ||||||| ||||||| ||||| ||||||
Sbjct 2948884 ATGGAGAACCAAGTCTTCTTACCCATAATCACCAGATTCTGTTTACCT 2948931
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406098234703864
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |