Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq6472 170 2e-37 seq7015 140 3e-28 seq8681 109 4e-19 seq3771 109 4e-19 seq4682 95.1 1e-14 seq5171 86.0 5e-12 seq3505 82.4 6e-11 >seq6472 Length=2227648 Score = 170 bits (188), Expect = 2e-37 Identities = 167/214 (78%), Gaps = 1/214 (0%) Strand=Plus/Minus Query 29610 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCCACGTGGTCAAGGT 29669 ||||||||| |||||| || | || |||||||| |||| || || | ||| | |||| Sbjct 2220019 TGGGAAAGG-TCTGGGTTCTCGCTGAAGCTGAATTTTCAGTGGCTCGATGTGATTCAGGT 2219961 Query 29670 AGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAG 29729 | | || |||||||||| ||||| ||||| || || || | || || |||| ||| | Sbjct 2219960 AAATATGTGCATCTCCCAAAGTGTGTACAAAGTCACCTGGCTTCAGGCCCGTGATGTGCG 2219901 Query 29730 CCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACCCCGAGCCCCATGT 29789 | |||||||||||||| || | ||||||||||||||| || ||||| || || ||||||| Sbjct 2219900 CAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGCACGCCTAGGCCCATGT 2219841 Query 29790 CCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTC 29823 | || || |||||||| |||||||| || ||||| Sbjct 2219840 CTCCCGATCTCTGGTACAGCTGGCAGGACAGCTC 2219807 >seq7015 Length=9623085 Score = 140 bits (154), Expect = 3e-28 Identities = 130/165 (79%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||||||||| || | ||||||||||||||| || ||| Sbjct 2250479 AGGCCCGTGATGTGCGCAATCATGTACGTGAGTAGGGCGTAGCTGGCGATGTTGAAAGGC 2250420 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || |||||||| || || |||||||| |||||||| || ||||| | || | Sbjct 2250419 ACGCCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 2250360 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 || || ||||| || | ||| ||||| ||||| || ||||| ||| Sbjct 2250359 ACATAGAACTGGCAGAGGGCGTGGCATGGAGGCAGTGCCATCAGA 2250315 Score = 102 bits (112), Expect = 7e-17 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAG 30076 ||||||||||||||||| || || || || |||| ||| || ||||| ||| ||| Sbjct 2246307 AAATGCCTCCACTGGAAGCCATAAACTGGACCCAAGTCCCCTTCTTCTCTGGTGGAGAAC 2246248 Query 30077 CCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCG 30136 ||| ||||||||||||||| ||| || ||||| |||||||| || || ||||| Sbjct 2246247 CCCAGGCTGTCCAAAAAGTCTCGGGATCCATTGGCATCCCAGATTTTCACTCCCTTGGAA 2246188 Query 30137 GAGAGCTCTTTGGAGTTTGTGGACCC 30162 || ||||| || | |||||||| || Sbjct 2246187 GACAGCTCCTTAGCATTTGTGGATCC 2246162 >seq8681 Length=27971852 Score = 109 bits (120), Expect = 4e-19 Identities = 183/260 (70%), Gaps = 10/260 (4%) Strand=Plus/Minus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || || || || || || |||||||| |||| || | || | | Sbjct 24368782 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTT 24368723 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | ||||| |||||| || || ||||||||||||||||| ||||||| |||| || || Sbjct 24368722 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAAGTCTTCTTACCCATAATCATCAGATT 24368663 Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 114440 ||| |||||| | ||||| || | |||| | ||| | || | | | || || || Sbjct 24368662 CTGTTTACCTTCTACTGAAGAGGTTGTGGTC-ATTCTCTGGAAATATCTGAATTCATT-- 24368606 Query 114441 AAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 114499 || | ||| |||| ||||| || ||||| || |||||||||||| ||||| || Sbjct 24368605 ----CCTGAGCGGTGGCCAGGGCAGGTCCCCGTTCTTGCCGATGCCCATGTTCTGG-GAC 24368551 Query 114500 GCTGCCACGATACCGTTCAG 114519 | || ||||| | ||| || Sbjct 24368550 ACAGCGACGATGCAGTTTAG 24368531 >seq3771 Length=10901971 Score = 109 bits (120), Expect = 4e-19 Identities = 183/260 (70%), Gaps = 10/260 (4%) Strand=Plus/Minus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || || || || || || |||||||| |||| || | || | | Sbjct 4179299 ATGAGCTCCTTCTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTT 4179240 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | ||||| |||||| || || ||||||||||||||||| ||||||| ||||||| || Sbjct 4179239 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAAGTCTTCTTACCCATAATCACCAGATT 4179180 Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 114440 ||| |||||| | ||||| || | |||| | ||| | || | | | || || || Sbjct 4179179 CTGTTTACCTTCTACTGAAGAGGTTGTGGTC-ATTCTCTGGAAATATCTGAATTCATT-- 4179123 Query 114441 AAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 114499 || | ||| |||| ||||| || || || || |||||||||||| ||||| || Sbjct 4179122 ----CCTGAGCGGCGGCCAGGGCAGGTCCCCATTCTTGCCGATGCCCATGTTCTGG-GAC 4179068 Query 114500 GCTGCCACGATACCGTTCAG 114519 | || ||||| | ||| || Sbjct 4179067 ACAGCGACGATGCAGTTTAG 4179048 >seq4682 Length=14522853 Score = 95.1 bits (104), Expect = 1e-14 Identities = 180/260 (69%), Gaps = 10/260 (4%) Strand=Plus/Plus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || || || || || | |||||||| |||| || | || | | Sbjct 6466498 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTATCTGCTGAGAACTAAATTAATTCTACCCTT 6466557 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | ||||| |||||| || | ||||||||||||||||| |||||| ||||||| || Sbjct 6466558 TAAAGGTCGATTCTTCTCAGAAATGGAGAACCAAGTCTTCTTACCCAAAATCACCAGATT 6466617 Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGGCTCGA-AAGTGTTTAAAATCTTTGC 114440 ||| |||||| | ||||| || | |||| | ||| | || | | | || || || Sbjct 6466618 CTGTTTACCTTCTACTGAAGAGGTTGTGGTC-ATTCTCTAGAAATATCTGAATTCATT-- 6466674 Query 114441 AAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 114499 || | ||| |||| ||||| || | ||| || |||||||||||| ||||| || Sbjct 6466675 ----CCTGAGCGGTGGCCAGGGCAGGTCCCTGTTCTTGCCGATGCCCATGTTCTGG-GAC 6466729 Query 114500 GCTGCCACGATACCGTTCAG 114519 | || ||||| | ||| || Sbjct 6466730 ACAGCGACGATGCAGTTTAG 6466749 >seq5171 Length=4515498 Score = 86.0 bits (94), Expect = 5e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || || || || || || |||||||| |||| || | || | | Sbjct 3346892 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTT 3346833 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | |||| |||||| || || ||||||||||||||||| ||| ||| ||||||| || Sbjct 3346832 TAAAGGTTGATTCTTCTCAGGAATGGAGAACCAAGTCTTCTTACTCATAATCACCAGATT 3346773 Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCA 114413 ||| |||||| | ||||| || | ||||| Sbjct 3346772 CTGTTTACCTTCTACTGAAGAGGTTGTGGTCA 3346741 >seq3505 Length=8742144 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || || |||||||| |||| || | || | | | ||||| |||||| || || Sbjct 2948824 TTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTTTAAAGGTCGATTCTTCTCAGGA 2948883 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||||||||| ||||||| ||||||| ||||| |||||| Sbjct 2948884 ATGGAGAACCAAGTCTTCTTACCCATAATCACCAGATTCTGTTTACCT 2948931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406098234703864