Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq3971 282 4e-71 seq5093 167 2e-36 seq5016 123 2e-23 seq2336 93.3 4e-14 seq7904 91.5 1e-13 seq6038 91.5 1e-13 seq5460 87.8 2e-12 >seq3971 Length=4903791 Score = 282 bits (312), Expect = 4e-71 Identities = 525/760 (69%), Gaps = 17/760 (2%) Strand=Plus/Plus Query 4379 TCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCT 4438 || ||| || ||||| || || | || |||| || ||| || || ||||| | Sbjct 744475 TCTGTCTGCCACAAACTCAATGCATTGCTTCATTAGAGTGCAATTCATCCCAATAGGCTT 744534 Query 4439 CACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATC 4498 |||||| | || | || | || || |||||||| || || | | ||||| || Sbjct 744535 CACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTATTTC 744594 Query 4499 TTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATC 4558 | ||| | | || | |||||| | ||| | || | |||| | || |||||||| Sbjct 744595 TCTTACTCTCTCCTCCAGTGGTTTGTGTACCAGGTGTTTGAACATCAGGCAAGCAAAATC 744654 Query 4559 ACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAA 4618 ||| || ||||| || ||||||||||| ||||| || ||||| || | || ||||| | Sbjct 744655 ACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAG 744714 Query 4619 ACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTAC 4678 |||| || || ||||| ||||| | ||||| | |||||||||| |||||||| | Sbjct 744715 TCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGA---TGCCTTCTGC 744771 Query 4679 GGCGGCAAACGCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTA 4737 || ||||| |||| | || || | | |||| ||||||| |||||| | | Sbjct 744772 TGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTT-CTTTGTCCCCAATCCAGTGCA 744830 Query 4738 ATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAA--ATAATTT 4795 | ||||| | || || ||||| || || || || || | || || || | | || || Sbjct 744831 AGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAGGAGAAATT 744890 Query 4796 ACTTTTTTCAAATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAAT 4854 | ||| | |||| |||| || |||||||| || | | |||||||||||||||| Sbjct 744891 CCCTTTCTT---TGGGATCTTTTATGTAAGTGTCAATACGGAAACTATACATTTCAGAAT 744947 Query 4855 GTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTT 4914 |||| |||||||| ||||| || || || | || || | |||||||| | ||||||| Sbjct 744948 GTATGTTTTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCATCTGAACTT 745007 Query 4915 CGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACG 4974 | | | ||||| || || |||||||| |||||||| || ||||| |||||||| || Sbjct 745008 CTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAA 745067 Query 4975 CCAAAACATGAGATATAAAGTACTGT-TCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAA 5033 ||| || |||||||||||| | || | || || ||||| || || ||||| | |||| Sbjct 745068 CCAGAATATGAGATATAAAAT-CTCTCTCCTCGGGCTTCAGGGATTCCCAGT--GCCAAA 745124 Query 5034 --TCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACA 5091 || || | | || || || || | ||||| || || |||||||| || || |||| Sbjct 745125 CGTCCTTGGACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACA 745184 Query 5092 TAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAA 5131 | ||| |||||| | |||| || || | |||||||| Sbjct 745185 TCTGCCAGATATCATGGTACTCGATGGGGAAGATGACAAA 745224 >seq5093 Length=2087638 Score = 167 bits (184), Expect = 2e-36 Identities = 382/567 (67%), Gaps = 20/567 (4%) Strand=Plus/Plus Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAAT 4607 || ||||| | ||| || ||||| || || |||||||| ||||| || ||||| || | Sbjct 528962 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 529021 Query 4608 CCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAAT 4667 || ||||| | |||| || || ||||| |||| ||||| || ||||||||| | Sbjct 529022 CCAGGCATCAGTCCTCGTTTCTTGAGCCAGGATATCAGTGCAAAAGAACCAGAAAAGCAG 529081 Query 4668 ATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCT--GGCTTTGTCTT 4725 ||| |||| | |||||||||| | | || || | ||| | |||||| Sbjct 529082 GTGCTTTCTCTAG-GGCAAACGCTGCAACACGTTCTCC--ATGAGTAACGTCTTTGTTCC 529138 Query 4726 TAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGT 4785 |||||| | || |||| || || ||||| || || || ||||| | || || | Sbjct 529139 CAATCCAATACAAGACCCAAACTGCCTTCTTCTTGACACA-GGCATTGTTTCAATGGCAT 529197 Query 4786 TAAATA--ATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATA 4843 | || | | | | ||| | | |||| ||| | ||||| || || || |||| Sbjct 529198 TGAAGAGAAACTCCCTTTGTTA------TCTTTAATGT--GTGTCAATAAGGAGACTATT 529249 Query 4844 CATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGT 4903 || |||| |||||| |||||||||||||| || || || || ||||| | |||||| Sbjct 529250 TATGTCAGCATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGT 529309 Query 4904 TACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGC 4963 | |||| ||| | | |||| ||| || |||||||| | |||||| || |||| || Sbjct 529310 AATCTGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGC 529369 Query 4964 TGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCA 5023 |||||| || |||| || | |||||||| || ||| |||||||| || || ||| Sbjct 529370 TGCAAAGAAAGCCAGAATACAGGATATAAAATATCTTTCCTCAGGCTTCAGGGCTTCCCA 529429 Query 5024 GTGGGGCAAA--TCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCT 5081 || | |||| || || | | || ||||| | | |||| || || | || || Sbjct 529430 GT--GCCAAATGTCCTTGGACAGGTCCACTTCCTGGGCCATCCAGAAAGAAACCTCTACT 529487 Query 5082 TTTTTGTACATAGACCAAATATCAGGA 5108 || || ||| | |||||||||| || Sbjct 529488 TTCTTATACGTTTTCCAAATATCATGA 529514 >seq5016 Length=4328724 Score = 123 bits (136), Expect = 2e-23 Identities = 161/220 (73%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 ||| || || ||||| || ||||| || | | ||||| ||||| || ||| || |||| Sbjct 108679 AGCTCTTGTGAAAACGGACATTCAGATAGCGCTGCCTTCTGGGTGTTATGGAAGAGTAGC 108738 Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884 ||| | || || ||||| | ||||||||||| || || || || ||||| |||||| Sbjct 108739 TCCATGGTCAGGCTTGGCTGCAAAACACTTTATTGATGTAGGAGCTGGTGTCATAGATGA 108798 Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAG 31941 ||| ||||||||||| ||||| |||| ||||||| ||||| |||||| | | || Sbjct 108799 AGATTATAGAGGAAATGTTGGTGTTGTACTGTTTAACTTTGGCAAAGAAAAGT-TTGAAG 108857 Query 31942 TATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981 | |||||||| ||| | || || || ||||||||| Sbjct 108858 --TCAAAAAGGGTGATTGAACTGCACAGCTCATTTGCGAA 108895 >seq2336 Length=9258750 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/130 (76%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 |||||||| || || ||||| ||||| || || ||||||||||||||||| || || | Sbjct 5777266 AAAATCTT---ACCAAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 5777210 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 ||||| || ||||||| ||| || | ||||| || |||||||| || | ||| || | Sbjct 5777209 TGTGAGAGATGAAGTACTTTTCATCTGCTTTAAGCTTGTTCCAGTGAGGGAGATCCTTCG 5777150 Query 5041 TTAAATCAAC 5050 ||| || || Sbjct 5777149 ATAAGTCGAC 5777140 Score = 86.0 bits (94), Expect = 5e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || || || ||||| || || |||||||| ||||| |||||||| ||||| |||||| Sbjct 5801348 TGATACTCCGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCC 5801289 Query 4320 ATAAAATCAAACGGATT 4336 ||||||||||| ||||| Sbjct 5801288 ATAAAATCAAAAGGATT 5801272 >seq7904 Length=13651311 Score = 91.5 bits (100), Expect = 1e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868 || |||| || |||||||| || || || |||||||||||||||||||| ||||| || Sbjct 3489763 GGATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATG 3489822 Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 ||||| || || || || || || | |||||||| | |||||||| | | ||||| Sbjct 3489823 GCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATC 3489880 >seq6038 Length=2793659 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Minus Query 31775 AAAACCGATATTCAAATTTCTTTACCTTCA--GGGTGCTACGGACGAATAGCTCCTAGAT 31832 ||||| || ||||| | || | ||||| ||||| || ||| || ||| ||| | | Sbjct 2377130 AAAACAGACATTCAGGTAGCTCTTCCTTCTCTGGGTGTTATGGAAGAGTAGTTCCATGGT 2377071 Query 31833 CTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATA 31892 |||| ||||| | ||||||| ||| || || || || ||||| ||||| | |||| Sbjct 2377070 CTGGCTTGGCTGCAAAACACTATATTGATGTAGGAGCTGGTGTCATAGACGACAATTATA 2377011 Query 31893 GAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG 31926 ||||||| ||||| |||| ||||||||||||| Sbjct 2377010 GAGGAAATGTTGGTGTTGTACTGTTTAATTTTGG 2376977 >seq5460 Length=12150108 Score = 87.8 bits (96), Expect = 2e-12 Identities = 167/242 (69%), Gaps = 7/242 (3%) Strand=Plus/Minus Query 31771 AGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAG 31830 ||| |||| || ||||| || || | ||||| |||| || || || || |||| | Sbjct 8067822 AGTGAAAATGGACATTCAGATAGCTCTTCCTTCTGGGTTTTATAGAAGAGTACCTCCATG 8067763 Query 31831 ATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTA 31890 ||||| ||||| | |||||||| ||||| || || | ||||| ||||| ||| || Sbjct 8067762 GTCTGGCTTGGCTGCAAAACACTT-ATCGATGTAGGAACTGGTGTCATAGACAAAGATTA 8067704 Query 31891 TAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAGTATAAA 31947 ||||||| ||||| ||| ||||||||||||| |||||| | || ||| || Sbjct 8067703 CTGAGGAAATGTTGGTGGTGTACTGTTTAATTTTGGCAAAGAAAAGT-TTAAAGTCAGAA 8067645 Query 31948 AAAGGGCGATAGGGTAGCTCAACTAATTTGCGAAAAAATAGAAATGCCCCAAATAGAAGT 32007 ||| | ||| | | || || || ||||| ||| ||| | || ||||||||| Sbjct 8067644 AAA--GTGATCGCATTGCACAGCTCATTTGTGAATGAATTTTTAATCCAGAAATAGAAGA 8067587 Query 32008 AG 32009 || Sbjct 8067586 AG 8067585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426981293950292