Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3971 376 3e-99 seq5093 212 9e-50 seq10655 111 2e-19 seq7904 111 2e-19 seq5016 111 2e-19 seq6727 109 8e-19 seq2336 84.2 3e-11 >seq3971 Length=4903791 Score = 376 bits (416), Expect = 3e-99 Identities = 651/941 (69%), Gaps = 19/941 (2%) Strand=Plus/Plus Query 47790 GTTC-TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCC 47845 |||| |||| |||||| |||| || | |||| ||| ||| | || |||| ||||| Sbjct 744294 GTTCATTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACACCACTCC 744353 Query 47846 CATTTTTTGATATTCACCC--ACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGAT 47903 ||| | ||||| || ||| || | ||||| || || || || ||| || ||| Sbjct 744354 CATCCTCTGATACTCTCCCTTACTCTCTTCTCAAAGAAGTTCGT-----CTTTCAGTGAA 744408 Query 47904 ATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCT 47963 ||||| |||||||| |||||||| || || | | ||| || |||| || | ||| Sbjct 744409 ATATTCTCCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCC 744468 Query 47964 GAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCT 48023 || |||| ||||| || || || || || ||||| | |||||||| || Sbjct 744469 AGCAT--GTCTGTCTGCCACAAACTCAATGCATTGCTTCATTAGAGTGCAATTCATCCCA 744526 Query 48024 ATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACT 48083 ||| | || || || | ||||| || || || || ||||| || ||||||| | Sbjct 744527 ATAGGCTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATA 744586 Query 48084 ATTATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACAT 48143 ||||| | |||| | ||||| |||| | | || ||||| ||||| | || Sbjct 744587 ATTATTTCTCTTACTCTCTCCTCCAGTGGTTTGTGTACCAGGTGTTTGAACATCAGGCAA 744646 Query 48144 GCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCG 48203 ||||||||||| || | ||| |||||||| ||||| | ||| || ||||||||||| || Sbjct 744647 GCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCA 744706 Query 48204 GGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATG 48263 ||||| ||||| ||||| |||||||| ||||| | || ||| | |||||||||| || Sbjct 744707 GGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGA---TG 744763 Query 48264 CCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT---ATC 48320 |||||| | || ||||| | || | || || || | ||||| |||| ||| Sbjct 744764 CCTTCTGCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTGTCCCCAATC 744823 Query 48321 CACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAG 48380 || | |||||||| ||||||||||| ||||||||||| ||||| || ||||| | | Sbjct 744824 CAGTGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAGG 744883 Query 48381 AGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCG 48440 ||||| | |||| ||| |||||| | |||||| || || | |||||||||||| Sbjct 744884 AGAAATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATACGGAAACTATACATTTCA 744943 Query 48441 GAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGT 48500 || || || ||||| || || || || || || | ||||| | |||||||| ||||| Sbjct 744944 GAATGTATGTTTTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCATCTGA 745003 Query 48501 ACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAA 48560 || || | |||||| || |||| || ||||||||||| |||||||| || ||||| Sbjct 745004 ACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAG 745063 Query 48561 AATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTG 48620 || | | | ||| ||||||| | | || | || |||| | ||||| Sbjct 745064 AAAACCAGAATATGAGATATAAAATCTCTCTCCTCGGGCTTCAGGGATTCCCAGTGCCAA 745123 Query 48621 ATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATAC 48680 | || || || | || || || || || ||||| || || || || || || |||||| Sbjct 745124 ACGTCCTTGGACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATAC 745183 Query 48681 ATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAA 48721 || | ||| |||||| ||| | ||| ||||| || ||||| Sbjct 745184 ATCTGCCAGATATCATGGTACTCGATGGGGAAGATGACAAA 745224 >seq5093 Length=2087638 Score = 212 bits (234), Expect = 9e-50 Identities = 388/561 (69%), Gaps = 17/561 (3%) Strand=Plus/Plus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || ||||| | ||| || | ||| ||||| || ||||| | ||| || ||||||||||| Sbjct 528962 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 529021 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAAT 48260 || ||||| ||||| ||||| |||||||| |||| || ||||| ||||||||| | Sbjct 529022 CCAGGCATCAGTCCTCGTTTCTTGAGCCAGGATATCAGTGCAAAAGAACCAGAAAAGCAG 529081 Query 48261 ATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCC----GTAACTGGCTTCGTTGTG 48316 ||| |||| | ||||| || | || | ||||| ||||| | ||| ||| Sbjct 529082 GTGCTTTCTCTAGG-GCAAACGCTGCAACACGTTCTCCATGAGTAAC-GTCTTTGTTCCC 529139 Query 48317 TATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 48376 ||||| ||||| | ||||||||||| ||||| ||||||||||| || ||||| Sbjct 529140 AATCCAATACAAGACCCAAACTGCCTTCTTCTTGACACA-GGCATTGTTTCAATGGCATT 529198 Query 48377 AAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACAT 48436 |||||||| | | ||| ||||||||| || || || || | ||||||| || Sbjct 529199 GAAGAGAAA----CTCCCTTTGTTATCTTTAATGT--GTGTCAATAAGGAGACTATTTAT 529252 Query 48437 TTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGAT 48496 || | || || ||||| || || || || || || || || || | |||||| || Sbjct 529253 GTCAGCATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAAT 529312 Query 48497 CTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGC 48556 ||| | || | |||| |||| |||| || |||| |||||| ||||||| || || Sbjct 529313 CTGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCTGC 529372 Query 48557 AAAAAATGC--TAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAG 48614 ||| || || |||||| | | ||||||||| |||| | | |||| | |||| Sbjct 529373 AAAGAAAGCCAGAATACAGGAT--ATAAAATATCTTTCCTCAGGCTTCAGGGCTTCCCAG 529430 Query 48615 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTT 48674 | || || || || | || ||||| | || |||| || || ||||| |||| Sbjct 529431 TGCCAAATGTCCTTGGACAGGTCCACTTCCTGGGCCATCCAGAAAGAAACCTCTACTTTC 529490 Query 48675 TTATACATATTCCATATATCA 48695 |||||| | ||||| |||||| Sbjct 529491 TTATACGTTTTCCAAATATCA 529511 >seq10655 Length=1710 Score = 111 bits (122), Expect = 2e-19 Identities = 109/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || ||||| || | || ||||| ||||| |||||||| || |||||||| ||||| Sbjct 602 GTACCAGCATTGAAGAGAGTGGGAGAAGCATGAGTAAACCACTTCTCAGAAAGAAGATTA 543 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 ||||||||||| |||| || ||||| || || || || || | ||| | ||||||| Sbjct 542 TATGTTTCAATTGCTGCATCAATGTCTTCTTTGTGGATCCCAACAGATACTCTCATCAAC 483 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 ||||| || ||||||||| || Sbjct 482 ATATGTTGTGGTCTTTCAGCC 462 >seq7904 Length=13651311 Score = 111 bits (122), Expect = 2e-19 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 |||||||| || || | ||| || ||||||||||| || ||||| ||||| ||||| ||| Sbjct 3487598 TCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 3487657 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283 ||||| ||||| | || ||||| || |||||||| |||||||| || || ||||| || Sbjct 3487658 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGC 3487716 Score = 86.0 bits (94), Expect = 9e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 48391 tttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATAT 48450 |||| ||| |||||| | |||||| || || | ||||||||||||||| || || || | Sbjct 3489755 TTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGT 3489814 Query 48451 TTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505 |||| || || || || || || || ||||| | |||||||| ||||| || || Sbjct 3489815 TTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 3489869 >seq5016 Length=4328724 Score = 111 bits (122), Expect = 2e-19 Identities = 235/344 (68%), Gaps = 19/344 (6%) Strand=Plus/Minus Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933 |||||| || ||||| ||| ||| | | ||||| || |||| | || ||| | ||| Sbjct 108976 TCCAGTAGAACCAAAACCTCCTGAAC--CCCTTTCGGTGTCATCCAAAGCTTGAATTTCT 108919 Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993 | | || |||||| | || | || | || || || || ||| ||||||| | || Sbjct 108918 TCTATTTCTGGATAAAAAATCCATTCGCAAATGAGCTGTGCAGTTCAATCACCCTTTTTG 108859 Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053 | |||||| | ||||| ||| || | ||| | || |||| | |||||||||||| Sbjct 108858 ACTTCAAACTTTTCTTTGCCAAAGTTAAACAGTACAACACCAACATTTCCTCTATAATCT 108799 Query 46054 TCATCTATTACTCCCCCTCCCACATCGATA---CCTTTTAGAGACAGTCCAGATCTAGGA 46110 |||||||| || || |||| ||||| ||| |||| || || || || | ||| Sbjct 108798 TCATCTATGACACCAGCTCCTACATCAATAAAGTGTTTTGCAGCCAAGCCTGACCATGGA 108739 Query 46111 GCTATTCTTCCATAA----CAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAA 46166 |||| |||||||||| ||||| |||| | ||| |||| || ||||| | ||| Sbjct 108738 GCTACTCTTCCATAACACCCAGAA----GGCAGCGCTATCTGAATGTCCGTTTTCA-CAA 108684 Query 46167 TCTCCTTTCTCC--AGGAGGGATAGTATAGTCGTACGCACTGTA 46208 |||||||| ||| || || || || || || |||||||| Sbjct 108683 -GAGCTTTCTCCATAGGTGGTATTGTGTAATCATAGGCACTGTA 108641 >seq6727 Length=1359887 Score = 109 bits (120), Expect = 8e-19 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| ||||| ||||| || ||||| ||||| || ||||| | || Sbjct 309612 TGAAATTCTCCTGACAAAACTCTGCGAGTATAGATATTGCTGGTGTAAGGTTCAATGGAC 309671 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| || |||| || |||||||| ||||| || ||||| || || | | |||||| Sbjct 309672 TCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAACTG 309731 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 309732 TTTCTTATACCAT 309744 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062 ||||| ||||| ||||||||||| ||||| ||||||| || ||||||| || | || Sbjct 321322 ACTCGCTTCATGAAGAGATCAGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTGC 321381 Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122 ||||| |||||||| ||||| || | ||| || || || | || || ||||||| || Sbjct 321382 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGC 321441 Query 78123 TCTAGATATATTGC 78136 || || || || || Sbjct 321442 TCCAGGTAAATAGC 321455 >seq2336 Length=9258750 Score = 84.2 bits (92), Expect = 3e-11 Identities = 69/84 (82%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 48638 TACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACT 48697 ||| ||||| |||||||| || || |||| ||| | ||||||||| ||||| |||||| Sbjct 5780122 TACCTCTTCTGCTGTCCAGAAGGAAGCCTGTGCCTGTTTATACATTTTCCAAATATCAGG 5780063 Query 48698 GTATTGGATTGGGAAAATAACAAA 48721 |||||||||||| || || ||||| Sbjct 5780062 GTATTGGATTGGAAAGATGACAAA 5780039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694554839583360