Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201
5-03-12] 13,124 sequences; 2,970,124,662 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq3971 376 3e-99
seq5093 212 9e-50
seq10655 111 2e-19
seq7904 111 2e-19
seq5016 111 2e-19
seq6727 109 8e-19
seq2336 84.2 3e-11
>seq3971
Length=4903791
Score = 376 bits (416), Expect = 3e-99
Identities = 651/941 (69%), Gaps = 19/941 (2%)
Strand=Plus/Plus
Query 47790 GTTC-TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGA---GACATAACTCC 47845
|||| |||| |||||| |||| || | |||| ||| ||| | || |||| |||||
Sbjct 744294 GTTCATTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACACCACTCC 744353
Query 47846 CATTTTTTGATATTCACCC--ACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGAT 47903
||| | ||||| || ||| || | ||||| || || || || ||| || |||
Sbjct 744354 CATCCTCTGATACTCTCCCTTACTCTCTTCTCAAAGAAGTTCGT-----CTTTCAGTGAA 744408
Query 47904 ATATTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCT 47963
||||| |||||||| |||||||| || || | | ||| || |||| || | |||
Sbjct 744409 ATATTCTCCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCC 744468
Query 47964 GAAATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCT 48023
|| |||| ||||| || || || || || ||||| | |||||||| ||
Sbjct 744469 AGCAT--GTCTGTCTGCCACAAACTCAATGCATTGCTTCATTAGAGTGCAATTCATCCCA 744526
Query 48024 ATAAGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACT 48083
||| | || || || | ||||| || || || || ||||| || ||||||| |
Sbjct 744527 ATAGGCTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATA 744586
Query 48084 ATTATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACAT 48143
||||| | |||| | ||||| |||| | | || ||||| ||||| | ||
Sbjct 744587 ATTATTTCTCTTACTCTCTCCTCCAGTGGTTTGTGTACCAGGTGTTTGAACATCAGGCAA 744646
Query 48144 GCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCG 48203
||||||||||| || | ||| |||||||| ||||| | ||| || ||||||||||| ||
Sbjct 744647 GCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCA 744706
Query 48204 GGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATG 48263
||||| ||||| ||||| |||||||| ||||| | || ||| | |||||||||| ||
Sbjct 744707 GGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGA---TG 744763
Query 48264 CCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTGTGT---ATC 48320
|||||| | || ||||| | || | || || || | ||||| |||| |||
Sbjct 744764 CCTTCTGCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTGTCCCCAATC 744823
Query 48321 CACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAG 48380
|| | |||||||| ||||||||||| ||||||||||| ||||| || ||||| | |
Sbjct 744824 CAGTGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAGG 744883
Query 48381 AGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCG 48440
||||| | |||| ||| |||||| | |||||| || || | ||||||||||||
Sbjct 744884 AGAAATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATACGGAAACTATACATTTCA 744943
Query 48441 GAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGT 48500
|| || || ||||| || || || || || || | ||||| | |||||||| |||||
Sbjct 744944 GAATGTATGTTTTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCATCTGA 745003
Query 48501 ACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAA 48560
|| || | |||||| || |||| || ||||||||||| |||||||| || |||||
Sbjct 745004 ACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAG 745063
Query 48561 AATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTG 48620
|| | | | ||| ||||||| | | || | || |||| | |||||
Sbjct 745064 AAAACCAGAATATGAGATATAAAATCTCTCTCCTCGGGCTTCAGGGATTCCCAGTGCCAA 745123
Query 48621 ATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATAC 48680
| || || || | || || || || || ||||| || || || || || || ||||||
Sbjct 745124 ACGTCCTTGGACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATAC 745183
Query 48681 ATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAA 48721
|| | ||| |||||| ||| | ||| ||||| || |||||
Sbjct 745184 ATCTGCCAGATATCATGGTACTCGATGGGGAAGATGACAAA 745224
>seq5093
Length=2087638
Score = 212 bits (234), Expect = 9e-50
Identities = 388/561 (69%), Gaps = 17/561 (3%)
Strand=Plus/Plus
Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200
|| ||||| | ||| || | ||| ||||| || ||||| | ||| || |||||||||||
Sbjct 528962 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 529021
Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAAT 48260
|| ||||| ||||| ||||| |||||||| |||| || ||||| ||||||||| |
Sbjct 529022 CCAGGCATCAGTCCTCGTTTCTTGAGCCAGGATATCAGTGCAAAAGAACCAGAAAAGCAG 529081
Query 48261 ATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCC----GTAACTGGCTTCGTTGTG 48316
||| |||| | ||||| || | || | ||||| ||||| | ||| |||
Sbjct 529082 GTGCTTTCTCTAGG-GCAAACGCTGCAACACGTTCTCCATGAGTAAC-GTCTTTGTTCCC 529139
Query 48317 TATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 48376
||||| ||||| | ||||||||||| ||||| ||||||||||| || |||||
Sbjct 529140 AATCCAATACAAGACCCAAACTGCCTTCTTCTTGACACA-GGCATTGTTTCAATGGCATT 529198
Query 48377 AAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACAT 48436
|||||||| | | ||| ||||||||| || || || || | ||||||| ||
Sbjct 529199 GAAGAGAAA----CTCCCTTTGTTATCTTTAATGT--GTGTCAATAAGGAGACTATTTAT 529252
Query 48437 TTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGAT 48496
|| | || || ||||| || || || || || || || || || | |||||| ||
Sbjct 529253 GTCAGCATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAAT 529312
Query 48497 CTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGC 48556
||| | || | |||| |||| |||| || |||| |||||| ||||||| || ||
Sbjct 529313 CTGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCTGC 529372
Query 48557 AAAAAATGC--TAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAG 48614
||| || || |||||| | | ||||||||| |||| | | |||| | ||||
Sbjct 529373 AAAGAAAGCCAGAATACAGGAT--ATAAAATATCTTTCCTCAGGCTTCAGGGCTTCCCAG 529430
Query 48615 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTT 48674
| || || || || | || ||||| | || |||| || || ||||| ||||
Sbjct 529431 TGCCAAATGTCCTTGGACAGGTCCACTTCCTGGGCCATCCAGAAAGAAACCTCTACTTTC 529490
Query 48675 TTATACATATTCCATATATCA 48695
|||||| | ||||| ||||||
Sbjct 529491 TTATACGTTTTCCAAATATCA 529511
>seq10655
Length=1710
Score = 111 bits (122), Expect = 2e-19
Identities = 109/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458
|| || ||||| || | || ||||| ||||| |||||||| || |||||||| |||||
Sbjct 602 GTACCAGCATTGAAGAGAGTGGGAGAAGCATGAGTAAACCACTTCTCAGAAAGAAGATTA 543
Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518
||||||||||| |||| || ||||| || || || || || | ||| | |||||||
Sbjct 542 TATGTTTCAATTGCTGCATCAATGTCTTCTTTGTGGATCCCAACAGATACTCTCATCAAC 483
Query 78519 ATATGCTGAGGTCTTTCAACC 78539
||||| || ||||||||| ||
Sbjct 482 ATATGTTGTGGTCTTTCAGCC 462
>seq7904
Length=13651311
Score = 111 bits (122), Expect = 2e-19
Identities = 96/119 (81%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224
|||||||| || || | ||| || ||||||||||| || ||||| ||||| ||||| |||
Sbjct 3487598 TCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 3487657
Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGC 48283
||||| ||||| | || ||||| || |||||||| |||||||| || || ||||| ||
Sbjct 3487658 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGC 3487716
Score = 86.0 bits (94), Expect = 9e-12
Identities = 88/115 (77%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 48391 tttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATAT 48450
|||| ||| |||||| | |||||| || || | ||||||||||||||| || || || |
Sbjct 3489755 TTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGT 3489814
Query 48451 TTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTC 48505
|||| || || || || || || || ||||| | |||||||| ||||| || ||
Sbjct 3489815 TTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 3489869
>seq5016
Length=4328724
Score = 111 bits (122), Expect = 2e-19
Identities = 235/344 (68%), Gaps = 19/344 (6%)
Strand=Plus/Minus
Query 45876 TCCAGTGGATCCAAATCCT--TGAGCGTCTCTTTCAGTACCATCTAGAGATTGCACTTCC 45933
|||||| || ||||| ||| ||| | | ||||| || |||| | || ||| | |||
Sbjct 108976 TCCAGTAGAACCAAAACCTCCTGAAC--CCCTTTCGGTGTCATCCAAAGCTTGAATTTCT 108919
Query 45934 TTCAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCCGTATTT 45993
| | || |||||| | || | || | || || || || ||| ||||||| | ||
Sbjct 108918 TCTATTTCTGGATAAAAAATCCATTCGCAAATGAGCTGTGCAGTTCAATCACCCTTTTTG 108859
Query 45994 ATTTCAAATATATCTTTTCCATTATTGATCAGAATGACTCCAATTGTCCCTCTATAATCT 46053
| |||||| | ||||| ||| || | ||| | || |||| | ||||||||||||
Sbjct 108858 ACTTCAAACTTTTCTTTGCCAAAGTTAAACAGTACAACACCAACATTTCCTCTATAATCT 108799
Query 46054 TCATCTATTACTCCCCCTCCCACATCGATA---CCTTTTAGAGACAGTCCAGATCTAGGA 46110
|||||||| || || |||| ||||| ||| |||| || || || || | |||
Sbjct 108798 TCATCTATGACACCAGCTCCTACATCAATAAAGTGTTTTGCAGCCAAGCCTGACCATGGA 108739
Query 46111 GCTATTCTTCCATAA----CAGAATTTGGGCATAGACATCCGAATATCTGTTTTAATCAA 46166
|||| |||||||||| ||||| |||| | ||| |||| || ||||| | |||
Sbjct 108738 GCTACTCTTCCATAACACCCAGAA----GGCAGCGCTATCTGAATGTCCGTTTTCA-CAA 108684
Query 46167 TCTCCTTTCTCC--AGGAGGGATAGTATAGTCGTACGCACTGTA 46208
|||||||| ||| || || || || || || ||||||||
Sbjct 108683 -GAGCTTTCTCCATAGGTGGTATTGTGTAATCATAGGCACTGTA 108641
>seq6727
Length=1359887
Score = 109 bits (120), Expect = 8e-19
Identities = 104/133 (78%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186
||||||||||| ||||| ||||| ||||| || ||||| ||||| || ||||| | ||
Sbjct 309612 TGAAATTCTCCTGACAAAACTCTGCGAGTATAGATATTGCTGGTGTAAGGTTCAATGGAC 309671
Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246
||||| || |||| || |||||||| ||||| || ||||| || || | | ||||||
Sbjct 309672 TCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAACTG 309731
Query 77247 TTTCTGAGACCAT 77259
||||| | |||||
Sbjct 309732 TTTCTTATACCAT 309744
Score = 93.3 bits (102), Expect = 6e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 78003 ACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGT 78062
||||| ||||| ||||||||||| ||||| ||||||| || ||||||| || | ||
Sbjct 321322 ACTCGCTTCATGAAGAGATCAGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTGC 321381
Query 78063 TCTTCATTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 78122
||||| |||||||| ||||| || | ||| || || || | || || ||||||| ||
Sbjct 321382 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGC 321441
Query 78123 TCTAGATATATTGC 78136
|| || || || ||
Sbjct 321442 TCCAGGTAAATAGC 321455
>seq2336
Length=9258750
Score = 84.2 bits (92), Expect = 3e-11
Identities = 69/84 (82%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 48638 TACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCATATATCACT 48697
||| ||||| |||||||| || || |||| ||| | ||||||||| ||||| ||||||
Sbjct 5780122 TACCTCTTCTGCTGTCCAGAAGGAAGCCTGTGCCTGTTTATACATTTTCCAAATATCAGG 5780063
Query 48698 GTATTGGATTGGGAAAATAACAAA 48721
|||||||||||| || || |||||
Sbjct 5780062 GTATTGGATTGGAAAGATGACAAA 5780039
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694554839583360
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