Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq3971 334 1e-86 seq5093 221 2e-52 seq2336 111 2e-19 seq6727 109 8e-19 seq7904 107 3e-18 seq10655 98.7 1e-15 seq5016 96.9 5e-15 >seq3971 Length=4903791 Score = 334 bits (370), Expect = 1e-86 Identities = 643/940 (68%), Gaps = 26/940 (3%) Strand=Plus/Plus Query 46283 TTTAAAAGTCGACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTT 46339 |||| ||||| |||| || | |||| ||| ||| | | ||||| |||||||| Sbjct 744299 TTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACACCACTCCCATCC 744358 Query 46340 TTTGGTATTCACC--TACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 46397 | || || || || ||| | ||||| || || || || ||| || ||| ||||| Sbjct 744359 TCTGATACTCTCCCTTACTCTCTTCTCAAAGAAGTTCGT-----CTTTCAGTGAAATATT 744413 Query 46398 TTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAAT 46457 |||||||| ||||| || || || | ||| || |||| || | ||| || Sbjct 744414 CTCCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCAGCAT 744473 Query 46458 CAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCA---CAATTCATTCCTAT 46514 |||| ||||| || || || || | || | ||||| | |||||||| || || Sbjct 744474 --GTCTGTCTGCCACAAACTCAATGCA---TTGCTTCATTAGAGTGCAATTCATCCCAAT 744528 Query 46515 GAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATA- 46573 | || || || | ||||| || || || || ||||| || ||||||| |||| Sbjct 744529 AGGCTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATT-GATAA 744587 Query 46574 TTATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATG 46633 |||| | ||||| | ||||| |||| || | || ||||| ||||| | || | Sbjct 744588 TTATTTCTCTTACTCTCTCCTCCAGTGGTTTGTGTACCAGGTGTTTGAACATCAGGCAAG 744647 Query 46634 CAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAG 46693 |||||||||| || | || |||||||| ||||| | ||| || ||||||||||| |||| Sbjct 744648 CAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAG 744707 Query 46694 GCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGC 46753 |||| ||||| || || |||||||| ||||| | || ||| | |||||||||| ||| Sbjct 744708 GCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGA---TGC 744764 Query 46754 CTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTATG---AATCC 46810 ||||| | || || || | |||| | || || || | || || || | ||||| Sbjct 744765 CTTCTGCTGCAGCAAAGACTACAACACGTTCACCATAGGTAGCTTCTTTGTCCCCAATCC 744824 Query 46811 ACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGA 46870 | |||||||| ||||| ||||| ||||||||||| ||||| || ||||| | || Sbjct 744825 AGTGCAAGGCCCAATCTGCCTTCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAGGA 744884 Query 46871 GAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTG 46930 |||| | |||| | |||||| | || || || || | |||||||||||| | Sbjct 744885 GAAATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATACGGAAACTATACATTTCAG 744944 Query 46931 AATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTA 46990 |||| |||||||| || || || || || || | ||||| | ||||| || ||||| | Sbjct 744945 AATGTATGTTTTCTATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCATCTGAA 745004 Query 46991 CCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAA 47050 | ||| | |||||| || ||| || ||||| ||||| |||||||| || ||||| | Sbjct 745005 CTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGA 745064 Query 47051 ATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGA 47110 | ||| | ||| ||||||| | | || |||| |||| | ||||| | Sbjct 745065 AAACCAGAATATGAGATATAAAATCTCTCTCCTCGGGCTTCAGGGATTCCCAGTGCCAAA 745124 Query 47111 TATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACA 47170 || || || | || || || || || |||||||| || || || || || ||||||| Sbjct 745125 CGTCCTTGGACAGGTCCACCTCCTCGGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACA 745184 Query 47171 TATTCCATATATCACGATATTGGATCGGAAAAATAACAAA 47210 | | ||| |||||| | || | ||| || || || ||||| Sbjct 745185 TCTGCCAGATATCATGGTACTCGATGGGGAAGATGACAAA 745224 >seq5093 Length=2087638 Score = 221 bits (244), Expect = 2e-52 Identities = 393/564 (70%), Gaps = 17/564 (3%) Strand=Plus/Plus Query 46630 CATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGC 46689 || ||||| | ||| || | || ||||| || ||||| | ||| || ||||||||||| Sbjct 528962 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 529021 Query 46690 CCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAAT 46749 |||||||| ||||| || || |||||||| |||| || ||||| ||||||||| | Sbjct 529022 CCAGGCATCAGTCCTCGTTTCTTGAGCCAGGATATCAGTGCAAAAGAACCAGAAAAGCAG 529081 Query 46750 ATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTAT---GA 46806 ||| |||| || || || || ||| | ||||| | | | | || || | | Sbjct 529082 GTGCTTTCTCTAG-GGCAAACGCTGCAACACGTTCTCCATGAGTAACGTCTTTGTTCCCA 529140 Query 46807 ATCCACCTTTGAG-CCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATT 46865 ||||| | || ||||| | ||||| ||||| |||| |||||||||||| || ||||| Sbjct 529141 ATCCA-ATACAAGACCCAAACTGCCTTCTTCTTGACAC-AGGCATTGTTTCAATGGCATT 529198 Query 46866 AAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACAT 46925 |||||||| | ||| |||||||| || ||| || || | ||||||| || Sbjct 529199 GAAGAGAAACTCCCTTT----GTTATCTTTA--ATGTGTGTCAATAAGGAGACTATTTAT 529252 Query 46926 TTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAAT 46985 || | ||| |||||||| ||||| || || || || || || || | ||| ||||| Sbjct 529253 GTCAGCATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAAT 529312 Query 46986 CTGTACCTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGC 47045 ||| | ||| | |||| |||| ||| || |||| ||||| ||||||| || || Sbjct 529313 CTGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCTGC 529372 Query 47046 AAAAAATGCC--AATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAG 47103 ||| || ||| |||||| | | ||||||||| |||| || | |||| | |||| Sbjct 529373 AAAGAAAGCCAGAATACAGGAT--ATAAAATATCTTTCCTCAGGCTTCAGGGCTTCCCAG 529430 Query 47104 TCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTT 47163 | || || || || | || ||||| | || ||||||| || ||||| |||| Sbjct 529431 TGCCAAATGTCCTTGGACAGGTCCACTTCCTGGGCCATCCAGAAAGAAACCTCTACTTTC 529490 Query 47164 TTATACATATTCCATATATCACGA 47187 |||||| | ||||| |||||| || Sbjct 529491 TTATACGTTTTCCAAATATCATGA 529514 >seq2336 Length=9258750 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 46652 CTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTT 46711 |||||||||| || || | ||| || ||||| ||||| || ||||| || || | ||| | Sbjct 5792329 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 5792270 Query 46712 TGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATG 46771 | ||||| |||||||| || |||||||| || ||||| || ||||||||||| || || | Sbjct 5792269 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 5792210 Query 46772 CGACAAGTCTCTCTCC 46787 | || | ||| || || Sbjct 5792209 CCACCACTCTTTCCCC 5792194 Score = 89.7 bits (98), Expect = 7e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186 ||| ||||| ||||||||||| || |||| ||| | ||||||||| ||||| |||||| | Sbjct 5780122 TACCTCTTCTGCTGTCCAGAAGGAAGCCTGTGCCTGTTTATACATTTTCCAAATATCAGG 5780063 Query 47187 ATATTGGATCGGAAAAATAACAAA 47210 |||||||| ||||| || ||||| Sbjct 5780062 GTATTGGATTGGAAAGATGACAAA 5780039 >seq6727 Length=1359887 Score = 109 bits (120), Expect = 8e-19 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| ||||| ||||| ||||| || ||||| ||||| || ||||| | || Sbjct 309612 TGAAATTCTCCTGACAAAACTCTGCGAGTATAGATATTGCTGGTGTAAGGTTCAATGGAC 309671 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| || |||| || |||||||| ||||| || ||||| || || | | |||||| Sbjct 309672 TCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAACTG 309731 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 309732 TTTCTTATACCAT 309744 Score = 96.9 bits (106), Expect = 5e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || || | ||| |||||||| ||||| | || || || || || || || || || || Sbjct 338139 CTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTGGCTGCCAGGATA 338198 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 ||||||||||| || | ||||| |||| || ||| |||| || || |||||||||| | Sbjct 338199 GCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTAGT 338258 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 || | || || || || | || | ||||| || |||||||||| Sbjct 338259 TCCACTGTGGTGACCCCACTGTACAAGCCTTGGATTACTTTCATGG 338304 Score = 89.7 bits (98), Expect = 7e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 76598 ACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGT 76657 || || ||||| ||||||||||| ||||| ||||||| || ||||||| || | | Sbjct 321322 ACTCGCTTCATGAAGAGATCAGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTGC 321381 Query 76658 TCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGT 76717 ||||| |||||||| ||||| || | ||| ||||| || | || || ||||||| || Sbjct 321382 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGC 321441 Query 76718 TCTAGATATATCGC 76731 || || || || || Sbjct 321442 TCCAGGTAAATAGC 321455 Score = 86.0 bits (94), Expect = 9e-12 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 76520 TCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGAC 76579 |||||||| ||||||||||| ||||||| ||||||||| ||||| ||||||||||| ||| Sbjct 320895 TCAAATTCTTCTCCCCAAACCTCATCCAGACCAGGACACTCATTTGGACACATCAAAGAC 320954 Query 76580 CACTC 76584 || || Sbjct 320955 CAGTC 320959 >seq7904 Length=13651311 Score = 107 bits (118), Expect = 3e-18 Identities = 97/122 (80%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 |||||||| || || | ||| || ||||||||||| |||||||| ||||| || || ||| Sbjct 3487598 TCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 3487657 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 ||||| ||||| | || ||||| || |||||||| |||||||| || || || || || Sbjct 3487658 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 3487717 Query 46774 AC 46775 || Sbjct 3487718 AC 3487719 Score = 86.0 bits (94), Expect = 9e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 46890 ATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGC 46949 |||||| | || || || || | ||||||||||||||| ||||| |||||||| || || Sbjct 3489765 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 3489824 Query 46950 CATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTC 47009 || || || || || ||||| | ||||| |||||||| || ||| | |||||| || Sbjct 3489825 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 3489884 >seq10655 Length=1710 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || ||||| || | || ||||| |||||||| ||||| || |||||||| ||||| Sbjct 602 GTACCAGCATTGAAGAGAGTGGGAGAAGCATGAGTAAACCACTTCTCAGAAAGAAGATTA 543 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 ||||||||||| |||| || || || || || || || |||| || | ||||||| Sbjct 542 TATGTTTCAATTGCTGCATCAATGTCTTCTTTGTGGATCCCAACAGATACTCTCATCAAC 483 Query 77114 ATATGCTGAGGTCGTTC 77130 ||||| || |||| ||| Sbjct 482 ATATGTTGTGGTCTTTC 466 >seq5016 Length=4328724 Score = 96.9 bits (106), Expect = 5e-15 Identities = 232/344 (67%), Gaps = 19/344 (6%) Strand=Plus/Minus Query 44363 TCCCGTTGATCCAAATCCT--TGAGCGTCTCTATTGGTACTATCTAGAGATTGTACTTCC 44420 ||| || || ||||| ||| ||| | | || | ||| ||| | || ||| | ||| Sbjct 108976 TCCAGTAGAACCAAAACCTCCTGAAC--CCCTTTCGGTGTCATCCAAAGCTTGAATTTCT 108919 Query 44421 TCTAGATCAGGATAATATATACGTTGATAGATTAGTTGAGCTATTCTATCACCTGTATTT 44480 |||| || |||||| | || | || | || || || || ||| |||||| | || Sbjct 108918 TCTATTTCTGGATAAAAAATCCATTCGCAAATGAGCTGTGCAGTTCAATCACCCTTTTTG 108859 Query 44481 ATTTTAAAGGTATCTTTTCCATTATTGATCAAAATTACTCCAATGTTCCCCCTATAATCT 44540 | || ||| | ||||| ||| || | || | || |||| || || ||||||||| Sbjct 108858 ACTTCAAACTTTTCTTTGCCAAAGTTAAACAGTACAACACCAACATTTCCTCTATAATCT 108799 Query 44541 TCATCTATTACTCCACCTCCCACATCAATA---CCTTTTAGAGAAAGACCCGATCTAGGC 44597 |||||||| || ||| |||| ||||||||| |||| || | || || | || Sbjct 108798 TCATCTATGACACCAGCTCCTACATCAATAAAGTGTTTTGCAGCCAAGCCTGACCATGGA 108739 Query 44598 GCTATTCTTCCATAA----CAGAATTTTGGCATAGACATACGAATATCTGTTTTAATCAA 44653 |||| |||||||||| ||||| |||| | || |||| || ||||| | ||| Sbjct 108738 GCTACTCTTCCATAACACCCAGAA----GGCAGCGCTATCTGAATGTCCGTTTTCA-CAA 108684 Query 44654 CCGTCTTTCTCC--AGGAGGGATAGTATAATCGTAAGCACTGTA 44695 | |||||||| ||| || || || ||||| || |||||||| Sbjct 108683 GAG-CTTTCTCCATAGGTGGTATTGTGTAATCATAGGCACTGTA 108641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712817443111680