Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq3483 183 4e-41 seq9904 116 5e-21 >seq3483 Length=10873343 Score = 183 bits (202), Expect = 4e-41 Identities = 178/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 |||||||||| ||||| |||| |||||| ||||| || ||||| || |||||||| || Sbjct 3200870 GTCTGGAACAACTGCTCATCACCCCATTCCGGATGCTCCTGTTTAAGCACATCGCATACT 3200929 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 ||||||||||||| |||||||| ||||| |||||||| || ||||| ||||| ||||| Sbjct 3200930 CTGTTGTGTTCCCGCAGCCAGATTGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 3200989 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 |||| || || ||||| | |||| | || || |||| ||||| |||||||| | Sbjct 3200990 ACCTCCTGCCCCACAGCAAACCGCAGATGCTCAGGGACTTGAGGAGGGTAGATCATCTCT 3201049 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484 |||| |||||||| | ||| |||||||| || || ||||| |||| Sbjct 3201050 GCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAATTATCT 3201098 Score = 174 bits (192), Expect = 2e-38 Identities = 230/319 (72%), Gaps = 0/319 (0%) Strand=Plus/Plus Query 8269 GAGCTCCTCATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGAC 8328 |||||| ||| ||||| | ||| | | || ||||| ||||| ||||| | |||| Sbjct 3198828 GAGCTCTGGATCTGGAACACTGAATGAAGTAAAGGGACAGCCCTTCACGTTATTGCAGAT 3198887 Query 8329 TAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCT 8388 ||||||||||| | || | |||| ||| || ||||| ||||| || || ||||| Sbjct 3198888 GAGAGACTGAATTGAGGCAGTGTTGATGATTTGAAAACCCACTTCTCCACCAAAAGTGCT 3198947 Query 8389 GGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGG 8448 ||||||||||| | || || || || || || |||| || ||||| | ||||||||| Sbjct 3198948 TGGCTTCCAGTAGGCAGGAGAACATATAACATTACCCATAAGTCCTTTCAAGGAGAACGG 3199007 Query 8449 AGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAA 8508 || || | || | ||| ||||||| |||||||| | ||||| |||||||| |||| Sbjct 3199008 TGCTCCAACTTCTACCATGGTCTCACCAAAGATGGCATCTGGACGAGGCTTTTCTACCAG 3199067 Query 8509 GAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGC 8568 | | | |||||||||||||| |||| ||| || || || || | || |||| Sbjct 3199068 AAGGGCAGGATACAGCTCCACAGCATCGATGTCACCATAGAGTGCTTCCAACTCTGCAGA 3199127 Query 8569 GATCTCCTTTTCTCCTGTT 8587 || ||||||||||||||| Sbjct 3199128 CATTTCCTTTTCTCCTGTT 3199146 Score = 127 bits (140), Expect = 3e-24 Identities = 123/158 (78%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||||||||| ||||| ||||| ||||| || || |||||| ||| ||| | || Sbjct 3202024 TCTTACCCCATGGCCCAGCCCTTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 3202083 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 |||||| |||||||| || ||| |||| || || ||||| | ||| |||||||||||||| Sbjct 3202084 AAACTGATGCGTGAAGTGCTGGGCAAAGAATGCGAACATCATGTTTGTGCCCTGGGGATC 3202143 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 9806 || |||| | || | |||||| ||||||||||| Sbjct 3202144 AGGGATGAACTTTCTTCTTAGAAGAAATTTTTCCACAA 3202181 Score = 102 bits (112), Expect = 1e-16 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 9906 AGTCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTG 9965 |||||||||| || || | ||||| || || || | ||| || |||||||| || | Sbjct 3202633 AGTCACCTTTCACACCCAAGGGAGTCGGGCAGTCATCAGGCACAGGAGGTAGGGCTCTGG 3202692 Query 9966 CGTAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATA 10025 ||||||||||| || ||||| |||||||||||| ||| | ||||| | ||||| Sbjct 3202693 TATAATAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAGTCAACATTGTAAG 3202752 Query 10026 TGGGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059 | || || ||||||||||||| ||||| |||| Sbjct 3202753 TTGGTGGACTGTCAATCAAATGTGATCTGGCTGA 3202786 Score = 96.9 bits (106), Expect = 5e-15 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003 ||||| | ||| || ||||| || ||||| ||||| || | ||||||||| || || | Sbjct 3200277 CTTACCCTGCCAGCAATTTGCTTGGTGAATGATTCAACAAACTGGGTAATTCCATGTTCC 3200336 Query 9004 ATGAGTATGGAATTGTTGTAGACGAA--GTTAACGTAGTCATACTTTGTTTTATCAATCT 9061 | | ||| || |||||||||| || ||| | |||| || || | || ||| | Sbjct 3200337 AGTAATATAGAGTTGTTGTAGATAAACTGTTGA--TAGTTGTATTTCTGGTCATGAATTT 3200394 Query 9062 CAAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATAC 9121 ||| | || |||| || | |||||||||||| | | |||||||| | | |||| Sbjct 3200395 GAAAGGTGTCAGGCAGAAGGGGATGCCAGTGATAGAGGGTATTAAACTCAGCAGCAATAC 3200454 Query 9122 GATTTTGGTACTGGAA 9137 |||||||||||||||| Sbjct 3200455 GATTTTGGTACTGGAA 3200470 >seq9904 Length=12320365 Score = 116 bits (128), Expect = 5e-21 Identities = 168/237 (71%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 |||||||||| || |||| || ||||| || ||||| |||||||||||| | || | Sbjct 9345963 TCTTGACGATGTTAAAGCCCATCTCACCGCCAAATGTGCTCGGCTTCCAGTACTCTGGAG 9346022 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 | |||||| ||| | | ||| || |||||||| || ||||| || | ||| | || | Sbjct 9346023 AACAGATGGGATTCCCTAGGAGACCCTTGAGGGAAAAGGGAGCACCAATCTCTATCATAC 9346082 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 |||| || ||||| | ||| ||| || |||||| | | | || | ||| | ||||| Sbjct 9346083 TCTCCCCAAAGATAGAGTTTGGATGGCACTTTTCAAGAAGCAGCCCAGGGTAGAACTCCA 9346142 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || || | |||||| || || || | || || || |||||||| ||||||| Sbjct 9346143 ACGCGTCAATGTCTCCATACAGCTCCTCCAACTCCGCTGCCATCTCCTTCTCTCCTG 9346199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716759196360960