Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq2558 132 4e-26 seq6460 122 8e-23 seq7038 118 1e-21 seq11570 95.1 1e-14 >seq2558 Length=10987700 Score = 132 bits (146), Expect = 4e-26 Identities = 170/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || | |||||||| ||| | ||| ||| || || ||||| ||||| || Sbjct 486484 GCCACCTCGCAGGGGCAACACCAGGTGCGGGGTGGACTCTTTGTGGATGTTGTAGTCTGA 486425 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| ||| | | || || ||||| |||||||| |||||||| ||||| ||||| | || Sbjct 486424 GAGAGTGTGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGG 486365 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACAC-AGTGTCGCTCGACTCCA 41813 | | ||||||||| ||| |||| |||| ||| || |||||| || | ||| | Sbjct 486364 GATACCCTCCTTGTCT-TGAATTTTGGCTTTGACGTTCTCAATAGTGTCACTGGGCTCGA 486306 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||| | || || ||||| ||||| || |||||| || ||||||||||| Sbjct 486305 CCTCAAGGGTGATGGTTTTGCCCGTGAGGGTCTTTGTAAAGATCTGCATGTT 486254 >seq6460 Length=10151297 Score = 122 bits (134), Expect = 8e-23 Identities = 158/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 |||||||| ||||| ||| ||| ||||| ||||| ||||| ||||| ||||| | || Sbjct 3934080 AACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCT 3934139 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 || ||||| |||||||| |||||||| |||| ||||| | || | | |||||||| Sbjct 3934140 TCCAGCTGTTTGCCGGCAAATATCAGATGCTGCTGGTCAGGTGGGATACCCTCCTTGTGT 3934199 Query 41771 ATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCACCTCCACCGTTATCGT 41829 ||| |||| ||| | || | |||| || | ||| ||||| | || || || Sbjct 3934200 -TGAATTTTGTCTTTGTCATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGT 3934258 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| ||||| || ||||| || || ||||||||||| Sbjct 3934259 TTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTT 3934294 >seq7038 Length=1003649 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 41660 TGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGC 41719 ||||| || ||||||||| ||||| ||||| || || ||||| | || || |||||| Sbjct 394442 TGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGC 394501 Query 41720 TTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTT 41779 ||||| || || || || | ||| ||||| | ||||| || ||||| ||| |||||| Sbjct 394502 TTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGATTTTG 394561 Query 41780 TGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTC 41839 ||||| | ||||| || | ||||||||||| || || || || || ||| Sbjct 394562 GCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTC 394621 Query 41840 AGCGTCTTTACGAAAATCTGCAT 41862 || ||||| ||||| |||||||| Sbjct 394622 AGGGTCTTCACGAAGATCTGCAT 394644 >seq11570 Length=13276302 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| |||| ||| || || || ||||| ||||| ||||| ||||| | || || Sbjct 889449 ACCAGGTGCATGGTGGACTGTTTTTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCCTCC 889508 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || |||||||| |||| ||||| | || | | |||||||| | || Sbjct 889509 AGCTGCTTGCCAGCAAATATCAGATGCTGCTGGTCAGGTGGGATACCCTCCTTGT-CTTG 889567 Query 41774 ATTTTTTGCTTCAACGACGACACA---GTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 | |||| |||| | | | || |||| || | ||| ||||| | || || || Sbjct 889568 AATTTTGGCTTTGA--AATTCTCAGTGGTGTAACTGGGCTCGACCTCAAGGGTGATGGTC 889625 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| || ||||| || || | |||||| Sbjct 889626 TTGCCCGTGAGGGTCTTCACAAAGAGCTGCAT 889657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462228159028800