Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1557410 163 3e-35 seq1615235 96.9 3e-15 >seq1557410 Length=8730 Score = 163 bits (180), Expect = 3e-35 Identities = 395/596 (66%), Gaps = 13/596 (2%) Strand=Plus/Plus Query 16946 AGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGT 17005 || ||||| |||||||| || || || || ||| |||| ||||| |||||||| ||||| Sbjct 6814 AGGTGTTTGAACATCAGGCAGGCAAAGTCACAACGTAAACCCTCATCTCTGCTAGTAAGT 6873 Query 17006 TCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCG 17065 || | |||||||| | || |||||| ||||| |||||||| ||| ||||||| || Sbjct 6874 TCATAGGAAAATGTGAGGCCAGGCATCAGTCCTCATTTCTTTAGCCAGAATATCGATGCA 6933 Query 17066 AACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTAC 17125 || | ||||||||||| || || || || | ||||| || | | |||| |||| Sbjct 6934 AAAAAACCAGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCTACAACATGTTCTCCGTAG 6993 Query 17126 GTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCC 17185 || || ||||||| | |||||| | ||| || || || || | ||| | Sbjct 6994 GTAGCCTCTTTGTCCCCAATCCAACACAAGGTCCAATCCGCCTTCATCTAGACACAAGGC 7053 Query 17186 ATCGTTTCTATGGCCTT--AAATAATTTCTCTTTTTCCTGTAG-GTCGATTATATACGTA 17242 |||||||| ||||| || | | || ||| |||| || ||| || | || || || Sbjct 7054 ATCGTTTCAATGGCATTGAAGAGAAATTCCCTTT---CTTTAGAATCTTTAATGTAAGTG 7110 Query 17243 TCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAA 17302 || || | || || ||||| | || || ||||| | |||| || || || || || Sbjct 7111 TCAATAAAAAGACTATACATCTTAGAATGCATGTTTTTTGTGGCAATTTGGAAGCCATAG 7170 Query 17303 AAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTC 17362 || || |||||| |||||||| | || | || | | || || || Sbjct 7171 AAACAGTAGGCTTC-------TGAACTTCTTGGCCAAAATGCGCCACCAAGTTGTCATTT 7223 Query 17363 ACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCC 17422 || ||| ||| || || || || || |||| | | | ||||||| | | | || Sbjct 7224 ACTGTGCTGTCACTTGCTGCAAAGAAAGCCAGAACACGAGATATGAAATGTCTCTTCTCA 7283 Query 17423 GGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAA 17482 || | | | ||||| || | || ||||| | |||||| || || | |||||| Sbjct 7284 GGCTTCTGGGCTTCCCAGTGCTAAATGTCCTTGGAAAGATCCACCTCCTCCGCCGTCCAA 7343 Query 17483 AAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAA 17538 || || | | || || |||||||| ||||||||||| ||||| || ||||| Sbjct 7344 AAGGAAGGCTCAGCTTTCTTATACATTCACCAAATATCATGGTATTCAATAGGGAA 7399 >seq1615235 Length=3244 Score = 96.9 bits (106), Expect = 3e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| |||||||| |||||||| || |||||||| | || |||||| ||||||||||| Sbjct 3113 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 3054 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||| | || || || ||||||||||| || || || || | ||||| | Sbjct 3053 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 2994 Query 17106 C 17106 | Sbjct 2993 C 2993 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496641253937400