Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012
-01-05] 3,231,305 sequences; 2,855,365,987 total letters
Query= NC_001266.1
Length=159857
Score E
Sequences producing significant alignments: (Bits) Value
seq1557410 214 2e-50
seq1700391 107 2e-18
seq1615235 93.3 4e-14
seq1919022 86.0 6e-12
>seq1557410
Length=8730
Score = 214 bits (236), Expect = 2e-50
Identities = 568/858 (66%), Gaps = 20/858 (2%)
Strand=Plus/Plus
Query 15932 TTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATTA 15991
|| || |||||||| || ||||| || | || ||||| |||||||| ||||| |||||
Sbjct 6561 TTCTCAAAGAAGTTGGTCTTTCCTTCCAGTGAAATATTCTCCATAAAGTCAAATGGATTT 6620
Query 15992 GTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAA-TCTATCTGCTACAAATTC 16050
|| || | ||| | | ||||||||| |||| ||| ||||| ||||| ||
Sbjct 6621 TCTACTCGGAAAACCTTGCTGAAACCCAGTTCCAGC-CTAAGTCTGTCTGCCACAAACTC 6679
Query 16051 TATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGT--ACCGGAAGAGCTTTT 16108
| || || |||||| |||||| || | |||| | ||| | | || |
Sbjct 6680 AACGTACTGCTCCATTAACATGCAATTTCATCGCA-AAGTGCTTCACCAGCAAGGCCTCA 6738
Query 16109 GTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCA 16168
|| | ||| | ||||||||| ||| || | |||| || || | ||| ||
Sbjct 6739 GTGAGAAACTCCTGTTCTATCCTAACAGCATTGCTAATTATTTCTTTTACTCTCTGCTCT 6798
Query 16169 GACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCG 16228
| ||| | || |||||||| ||||| || || || ||||| ||| ||| || ||
Sbjct 6799 AATGGTTTGTGTACCAGGTGTTTGAACATCAGGCAGGCAAAGTCACAACGTAAACCCTCA 6858
Query 16229 TCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAAC 16288
|||||||| ||||||| | |||||| || | || ||||| ||||| |||||||| |
Sbjct 6859 TCTCTGCTAGTAAGTTCATAGGAAAATGTGAGGCCAGGCATCAGTCCTCATTTCTTTAGC 6918
Query 16289 CAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATT 16348
|||||||||| ||||| | || |||||||| || || || || | ||||| || |
Sbjct 6919 CAGAATATCGATGCAAAAAAACCAGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCTACA 6978
Query 16349 AATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTT 16408
| |||| |||| ||||| ||||| | | |||||| | ||| || || ||
Sbjct 6979 ACATGTTCTCCGTAGGTAGCCTCTTTGTCCCCAATCCAACACAAGGTCCAATCCGCCTTC 7038
Query 16409 TGTTTTATACAATCCATCGTTTCTATGGCCTT--AAACAATTTCTCTTTTTCCTGAATAT 16466
| | |||| ||||||||| ||||| || | | || ||| | |||| | | ||
Sbjct 7039 ATCTAGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATTCCC--TTTCTTTAGAAT 7096
Query 16467 CGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTA 16526
| | || || || ||||| | | ||| ||||| | || || ||||| | | |||| |
Sbjct 7097 CTTTAATGTAAGTGTCAATAAAAAGACTATACATCTTAGAATGCATGTTTTTTGTGGCAA 7156
Query 16527 TCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCG 16586
| || || |||||||| || || || | || ||||| | ||| | ||
Sbjct 7157 TTTGGAAGCCATAGAAACA-GTAGGCT------TCTGAACTTCTTGGCCAAAATGCGCCA 7209
Query 16587 CCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCC--AATATGTGCTTAAT 16644
||| ||| ||||| || | | ||||||||| ||||| || ||| || | | | | ||
Sbjct 7210 CCAAGTTGTCATTTACTGTGCTGTCACTTGCTGCAAAGAAAGCCAGAACACGAGAT--AT 7267
Query 16645 GAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCAC 16704
||||| | | | |||| | | | ||| | | | || ||||| | ||||||
Sbjct 7268 GAAATGTCTCTTCTCAGGCTTCTGGGCTTCCCAGTGCTAAATGTCCTTGGAAAGATCCAC 7327
Query 16705 TTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTA 16764
|| || | |||||||||| || | | || || ||||||||| ||||||||||| |||
Sbjct 7328 CTCCTCCGCCGTCCAAAAGGAAGGCTCAGCTTTCTTATACATTCACCAAATATCATGGTA 7387
Query 16765 TTGTATGGGAAATACGAC 16782
|| || || || | |||
Sbjct 7388 TTCAATAGGGAAGATGAC 7405
>seq1700391
Length=5054
Score = 107 bits (118), Expect = 2e-18
Identities = 104/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283
|||| || |||||||| ||||| ||||||||||| | || ||||| |||| ||||
Sbjct 3237 CTTCATCCCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCT 3296
Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343
||| ||||||||| |||||||| || ||||| ||||| || || || |||| ||||| |
Sbjct 3297 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 3356
Query 16344 CGATTAATCGTTCC 16357
||| | || ||||
Sbjct 3357 CGACCACTCTTTCC 3370
>seq1615235
Length=3244
Score = 93.3 bits (102), Expect = 4e-14
Identities = 92/119 (77%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285
|| |||||||| |||||||| |||||||| || | || ||||| ||||||||||||
Sbjct 3111 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 3052
Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344
| ||||||||| | ||||| || || |||||||| || || || || | ||||| ||
Sbjct 3051 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGC 2993
>seq1919022
Length=3229
Score = 86.0 bits (94), Expect = 6e-12
Identities = 65/77 (84%), Gaps = 0/77 (0%)
Strand=Plus/Minus
Query 15914 TGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCC 15973
||||| || ||| ||||| || ||||| ||||||||||| | |||||| || ||||||
Sbjct 3142 TGGTACTCTGAAACTCGTTTCTCAAAGAAATTAGTTTTTCCTTGTAAAGAAATGTTTTCC 3083
Query 15974 ATAAAATCAAAGGGATT 15990
|||||||||||||||||
Sbjct 3082 ATAAAATCAAAGGGATT 3066
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 490757701152600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |