Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1557410 214 2e-50 seq1700391 107 2e-18 seq1615235 93.3 4e-14 seq1919022 86.0 6e-12 >seq1557410 Length=8730 Score = 214 bits (236), Expect = 2e-50 Identities = 568/858 (66%), Gaps = 20/858 (2%) Strand=Plus/Plus Query 15932 TTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATTA 15991 || || |||||||| || ||||| || | || ||||| |||||||| ||||| ||||| Sbjct 6561 TTCTCAAAGAAGTTGGTCTTTCCTTCCAGTGAAATATTCTCCATAAAGTCAAATGGATTT 6620 Query 15992 GTAGCTGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAA-TCTATCTGCTACAAATTC 16050 || || | ||| | | ||||||||| |||| ||| ||||| ||||| || Sbjct 6621 TCTACTCGGAAAACCTTGCTGAAACCCAGTTCCAGC-CTAAGTCTGTCTGCCACAAACTC 6679 Query 16051 TATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGT--ACCGGAAGAGCTTTT 16108 | || || |||||| |||||| || | |||| | ||| | | || | Sbjct 6680 AACGTACTGCTCCATTAACATGCAATTTCATCGCA-AAGTGCTTCACCAGCAAGGCCTCA 6738 Query 16109 GTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCA 16168 || | ||| | ||||||||| ||| || | |||| || || | ||| || Sbjct 6739 GTGAGAAACTCCTGTTCTATCCTAACAGCATTGCTAATTATTTCTTTTACTCTCTGCTCT 6798 Query 16169 GACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCG 16228 | ||| | || |||||||| ||||| || || || ||||| ||| ||| || || Sbjct 6799 AATGGTTTGTGTACCAGGTGTTTGAACATCAGGCAGGCAAAGTCACAACGTAAACCCTCA 6858 Query 16229 TCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAAC 16288 |||||||| ||||||| | |||||| || | || ||||| ||||| |||||||| | Sbjct 6859 TCTCTGCTAGTAAGTTCATAGGAAAATGTGAGGCCAGGCATCAGTCCTCATTTCTTTAGC 6918 Query 16289 CAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATT 16348 |||||||||| ||||| | || |||||||| || || || || | ||||| || | Sbjct 6919 CAGAATATCGATGCAAAAAAACCAGAAAAGAAGATGCCTTCCACTGCGGCAAAGGCTACA 6978 Query 16349 AATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTT 16408 | |||| |||| ||||| ||||| | | |||||| | ||| || || || Sbjct 6979 ACATGTTCTCCGTAGGTAGCCTCTTTGTCCCCAATCCAACACAAGGTCCAATCCGCCTTC 7038 Query 16409 TGTTTTATACAATCCATCGTTTCTATGGCCTT--AAACAATTTCTCTTTTTCCTGAATAT 16466 | | |||| ||||||||| ||||| || | | || ||| | |||| | | || Sbjct 7039 ATCTAGACACAAGGCATCGTTTCAATGGCATTGAAGAGAAATTCCC--TTTCTTTAGAAT 7096 Query 16467 CGATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTA 16526 | | || || || ||||| | | ||| ||||| | || || ||||| | | |||| | Sbjct 7097 CTTTAATGTAAGTGTCAATAAAAAGACTATACATCTTAGAATGCATGTTTTTTGTGGCAA 7156 Query 16527 TCTGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCG 16586 | || || |||||||| || || || | || ||||| | ||| | || Sbjct 7157 TTTGGAAGCCATAGAAACA-GTAGGCT------TCTGAACTTCTTGGCCAAAATGCGCCA 7209 Query 16587 CCAGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCC--AATATGTGCTTAAT 16644 ||| ||| ||||| || | | ||||||||| ||||| || ||| || | | | | || Sbjct 7210 CCAAGTTGTCATTTACTGTGCTGTCACTTGCTGCAAAGAAAGCCAGAACACGAGAT--AT 7267 Query 16645 GAAATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCAC 16704 ||||| | | | |||| | | | ||| | | | || ||||| | |||||| Sbjct 7268 GAAATGTCTCTTCTCAGGCTTCTGGGCTTCCCAGTGCTAAATGTCCTTGGAAAGATCCAC 7327 Query 16705 TTCTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTA 16764 || || | |||||||||| || | | || || ||||||||| ||||||||||| ||| Sbjct 7328 CTCCTCCGCCGTCCAAAAGGAAGGCTCAGCTTTCTTATACATTCACCAAATATCATGGTA 7387 Query 16765 TTGTATGGGAAATACGAC 16782 || || || || | ||| Sbjct 7388 TTCAATAGGGAAGATGAC 7405 >seq1700391 Length=5054 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| || |||||||| ||||| ||||||||||| | || ||||| |||| |||| Sbjct 3237 CTTCATCCCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCT 3296 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 ||| ||||||||| |||||||| || ||||| ||||| || || || |||| ||||| | Sbjct 3297 TTAGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 3356 Query 16344 CGATTAATCGTTCC 16357 ||| | || |||| Sbjct 3357 CGACCACTCTTTCC 3370 >seq1615235 Length=3244 Score = 93.3 bits (102), Expect = 4e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || |||||||| |||||||| |||||||| || | || ||||| |||||||||||| Sbjct 3111 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 3052 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||||||||| | ||||| || || |||||||| || || || || | ||||| || Sbjct 3051 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGGC 2993 >seq1919022 Length=3229 Score = 86.0 bits (94), Expect = 6e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 15914 TGGTAATCACTAACGCGTTTTTCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCC 15973 ||||| || ||| ||||| || ||||| ||||||||||| | |||||| || |||||| Sbjct 3142 TGGTACTCTGAAACTCGTTTCTCAAAGAAATTAGTTTTTCCTTGTAAAGAAATGTTTTCC 3083 Query 15974 ATAAAATCAAAGGGATT 15990 ||||||||||||||||| Sbjct 3082 ATAAAATCAAAGGGATT 3066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 490757701152600