Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq394582 271 6e-68 seq1611918 170 1e-37 seq1921304 134 1e-26 seq2580127 82.4 6e-11 >seq394582 Length=1925 Score = 271 bits (300), Expect = 6e-68 Identities = 507/737 (69%), Gaps = 6/737 (1%) Strand=Plus/Minus Query 18613 AATTTCCTCTTTTAACTACAAAGCGTGTTTTTTGGAGGGCCGTCGTGGAAGAGTTGTTAT 18672 |||| ||| | || || || ||| | || |||||| ||| || |||| || | ||| Sbjct 1284 AATTCCCTTTGTTCACAACTAAGAGAGTCTTTTGGCGGGGTGTTCTGGAGGAACTTCTAT 1225 Query 18673 GGTTTATCCGCGGGTCAACCGATTCCAAAGAACTCGCCGCTAAAGATATACACATATGGG 18732 ||||| | || |||||||| | |||||||| || | | || | || |||| |||| Sbjct 1224 GGTTTGTTCGGGGGTCAACAAACTCCAAAGAGCTTTCATCAAAGGGGGTAAACATCTGGG 1165 Query 18733 ATATATACGGATCGAGCAAATTTCTAAATAGGAATGGCTTCCATAAAAGACACACGGGGG 18792 | | || || || | ||| || | | | || ||| | | ||| | ||| | Sbjct 1164 ACGCCAATGGCTCTAGAGACTTTTTAGACAAACACGGTTTCACTCATAGAACCGAGGGTG 1105 Query 18793 ACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGACTGTC 18852 |||| || || || || ||||| |||||||| || |||||||| || || | |||| Sbjct 1104 ACCTGGGACCTATCTATGGCTTTCAGTGGAGGCACTTTGGAGCAGACTACAGAGACATGA 1045 Query 18853 AATCAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATTA-AA 18911 | ||| | |||| ||||| || || || || |||| ||| || || || || | || Sbjct 1044 ACTCAGATTATTCTGGACAAGGGATTGACCAACTACAAAATGTGATTGACACGATCAGAA 985 Query 18912 ACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTA 18971 | || ||||| | || |||| || | | | |||||||| ||||| | || | Sbjct 984 AGAATCCCAGTGACAGGA-GAATCATATTGTGTGCCTGGAATCCCAAGGACCTTTCCCTG 926 Query 18972 ATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCC 19031 |||| || ||||| |||||||| || || ||||| || || || || || || || Sbjct 925 ATGGCCCTGCCTCCCTGTCACACCCTAGCCCAATTTTATGTGGCTAATGGAGAGTTGTCA 866 Query 19032 TGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGA 19091 || || | || |||||||||||||| |||||||| ||||| || || || | ||| | Sbjct 865 TGTCAGCTTTATCAGAGATCGGGGGACATGGGCCTGGGGGTTCCATTTAATGTGGCTAGT 806 Query 19092 TATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACC-GGAGATTTAAT 19150 ||| |||| || || ||||| | || || | ||| ||||||||||| || ||||| | Sbjct 805 TATTCACTGCTGACTTACATGATTGCACACCTAACA-GACTTAAAACCGGGTGATTTTGT 747 Query 19151 TCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGTGCAGCT 19210 |||||| | || |||||||| ||||| | || || ||||| || ||||| | ||| | Sbjct 746 GCATACACTTGGAGATGCACACATTTATCTCAACCACATAGAGCCTATAAAAATTCAGTT 687 Query 19211 AGCTCGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAATGTAACAGATATAAA 19270 | | |||||| ||| || || || | ||| | | || || | ||| | Sbjct 686 ACAGAGGACCCCAAGACCCTTCCCCACACTAACCATTCTGAGGAAAGTTAGCTGTATTGA 627 Query 19271 CGACTTTAAATGGGACGATTTTCAGCTT-GATGGATATAATCCACAccccccccTAAAAA 19329 ||||||||| |||| || |||||| || || || ||||||||||| ||| || |||||| Sbjct 626 TGACTTTAAAAGGGAGGA-TTTCAGTTTAGAGGGTTATAATCCACATCCCACCATAAAAA 568 Query 19330 TGGAAATGGCTCTTTAA 19346 |||| ||||| |||||| Sbjct 567 TGGAGATGGCACTTTAA 551 >seq1611918 Length=7152 Score = 170 bits (188), Expect = 1e-37 Identities = 482/738 (65%), Gaps = 22/738 (3%) Strand=Plus/Plus Query 18610 ATGAATTTCCTCTTTTAACTACAAAGCGTGTTTTTTGGAGGGCCGTCGTGGAAGAGTTGT 18669 ||||||||||||| | || || || |||| || |||| || || |||| |||||| Sbjct 3107 ATGAATTTCCTCTGCTGACAACCAAATGTGTGTTCTGGAAGGGTGTTTTGGAGGAGTTGC 3166 Query 18670 TATGGTTTATCCGCGGGTCAACCGATTCCAAAGAACTCGCCGCTAAAGATATACACATAT 18729 | |||| | || || || || || | |||||||| | | || | | | || | Sbjct 3167 TGTGGTCTGTCAAGGGATCCACAAATGCTAAAGAACTGTCTTCCAAGGGAGTGAAAATCT 3226 Query 18730 GGGATATATACGGATCGAGCAAATTTCTAAATAGGAATGGCTTCCATAAAAGACACACGG 18789 ||||| |||| || | | ||||| || | || ||| | ||| | Sbjct 3227 GGGATGCCAACGGGTCCCGAGACTTTCTGGATGGCCTGGGATTCTCCACCAGAGGAGAAG 3286 Query 18790 GGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGACT 18849 ||||| | ||||| ||| | |||||||||||| |||||||| || ||||| ||||| Sbjct 3287 GGGACTTGGGCCCAGTTTTTGACTTCCAGTGGAGGCATTTTGGGGCAGAATACAAAGATA 3346 Query 18850 GTCAATCAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATTA 18909 | ||| | |||| | |||||| | || || || |||| || || ||| | || | Sbjct 3347 TGGATTCAGATTATTCAGGTCAAGGAGTTGACCAACTACAAAAAGTGATTGATGCCATCA 3406 Query 18910 AAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCT 18969 |||| ||| | || | || |||| || || | |||||||||||| ||| | || Sbjct 3407 AAACCAACTCTGACGACAGAAGAATCATCATGTGTGCTTGGAATCCAACAGATCTTCCTC 3466 Query 18970 TAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTAT 19029 | |||| ||| ||| |||| || | | || ||||| || || | |||||||| | | Sbjct 3467 TGATGGCACTGCCTTCATGCCATGCCCTCTGCCAGTTCTATGTGGTGAACGGTGAGCTGT 3526 Query 19030 CCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTG 19089 ||||||| | |||||| | || || || |||||||| || | ||||||||||| | Sbjct 3527 CCTGCCAGCTGTACCAGCG-TCAGGAGACATGGGCCTGGGCATGCCGTTCAACATCACCA 3585 Query 19090 GATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTTAA 19149 | || || || || || | || || || || | || || || Sbjct 3586 GCTACGCCCT----------------GCTCACATCACTGGTCTAAAGCCAGGTGACTTTG 3629 Query 19150 TTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGTGCAGC 19209 | ||||| |||| |||||||||||||||| |||||| || || | | || || |||| Sbjct 3630 TACATACTTTGGGAGATGCACATATTTACTAGAATCACATTGAGCCACTGAAGGTTCAGC 3689 Query 19210 -TAGCTCGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAATGTAACAGA-TAT 19267 ||| ||| |||| ||| || || || ||||| ||| || || ||| || Sbjct 3690 TTAG--CGAGAACCAAGACCATTCCCGAAGCTCAAAATCCTTCAAAGAGT-TGAGACAAT 3746 Query 19268 AAACGACTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACAccccccccTAAA 19327 | || || ||| || || ||| | |||| | | |||| |||| || | | || Sbjct 3747 TGATGATTTCAAAGCTGAAGACTTTAAAATTGAAGCTTGTAATGCACATCCAACTATTAA 3806 Query 19328 AATGGAAATGGCTCTTTA 19345 ||||||||||||| |||| Sbjct 3807 AATGGAAATGGCTGTTTA 3824 >seq1921304 Length=364 Score = 134 bits (148), Expect = 1e-26 Identities = 175/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 18870 CAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATTAAAACAAACCCAGAAAGCCGA 18929 |||||| | || || ||||||| || || ||||| || ||||| ||||| || | || Sbjct 93 CAAGGAGTTGACCAACTGCAAAAAGTGATTGATACCATCAAAACCAACCCTGACGACAGA 152 Query 18930 CGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGGTACTACCTCCATGT 18989 |||| || || | ||||||||||||| ||| | || || |||| || ||||| ||| Sbjct 153 AGAATCATCATGTGTGCTTGGAATCCAAAAGATCTTCCTTTGATGGCGCTGCCTCCGTGT 212 Query 18990 CACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAGA 19049 || || || ||||| ||||| | || ||||| | |||||||| | |||||| Sbjct 213 CATGCGCCCTGCCAGTTCTACGTGGTGAATGGTGAGCTGTCCTGCCAGCTGTACCAGCTG 272 Query 19050 TCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTAC 19109 ||||| || |||||||| | || ||||||||||| || | || || || || || ||| Sbjct 273 TCGGGAGACATGGGCCTGAGCGTGCCGTTCAACATCGCCAGCTAGGCCCTGCTCACGTAC 332 Query 19110 AT 19111 || Sbjct 333 AT 334 >seq2580127 Length=234 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 18819 TGGAGACATTTTGGAGCGGAATATAAAGACTGTCAATCAAACTATTTACAGCAAGGAATC 18878 ||||| |||||||| || ||||| ||||| | ||| | |||||| |||||| | Sbjct 234 TGGAGGCATTTTGGGGCAGAATACAAAGATATGGATTCAGATTATTTAGGTCAAGGAGTT 175 Query 18879 GATCAGCTGCAAACTGTTATAGATACAATTAAAACAAACCCAGAAAGCCGACGAATGATT 18938 | |||||||||| || || ||||| || ||||| ||||| || | || |||| || Sbjct 174 GGCCAGCTGCAAAAAGTGATTGATACCATCAAAACCAACCCTGACGACAGAAGAATCATC 115 Query 18939 ATATCGTCTTGGAATCCAAA 18958 || | ||||||||||||| Sbjct 114 ATGTGTGCTTGGAATCCAAA 95 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 383770921363725