Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012
-01-05] 3,231,305 sequences; 2,855,365,987 total letters
Query= NC_001611.1
Length=185578
Score E
Sequences producing significant alignments: (Bits) Value
seq1557410 264 1e-65
seq1615235 120 3e-22
seq1725941 113 5e-20
seq1599774 113 5e-20
seq1700391 111 2e-19
seq2307158 84.2 2e-11
>seq1557410
Length=8730
Score = 264 bits (292), Expect = 1e-65
Identities = 627/940 (67%), Gaps = 17/940 (2%)
Strand=Plus/Plus
Query 23785 TTCTTTAA-AAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCC 23840
||| |||| |||||| |||| || | |||| ||| ||| | || ||||| ||||||
Sbjct 6477 TTCATTAAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCC 6536
Query 23841 ATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATA 23900
|| | || ||| || || | || || || || || || || ||||| | ||| |||
Sbjct 6537 ATCCTCTGACATTTGCCTACTCTCTTCTCAAAGAAGTTGGTCTTTCCTTCCAGTGAAATA 6596
Query 23901 TTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTT-TAAATCCCAATTCAGA 23959
|| ||||| || || ||||||| || | | | ||| | || |||| |||
Sbjct 6597 TTCTCCATAAAGTCAAATGGATTTTCTAC-TCGGAAAACCTTGCTGAAACCCAGTTCCAG 6655
Query 23960 AATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATT-CATTCCTA 24018
| | ||| ||||| |||||||| | || | ||| | ||||| ||| | |
Sbjct 6656 CCTAAGTCTGTCTGCCACAAACTCAACGTACTGCTCCATTAACATGCAATTTCATCGCAA 6715
Query 24019 TAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTA 24078
| || || | | ||| |||| ||||| || ||||| || || || | | |
Sbjct 6716 AGTGCTTCACCAGCAAGGCCTCAGTGAGAAACTCCTGTTCTATCCTAACAGCATTGCTAA 6775
Query 24079 TAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATG 24138
| || | ||||| | | || ||| | | | ||||| ||||||| || |
Sbjct 6776 TTATTTCTTTTACTCTCTGCTCTAATGGTTTGTGTACCAGGTGTTTGAACATCAGGCAGG 6835
Query 24139 CGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGG 24198
| || || || ||| |||||| ||||| ||| | | ||| | |||||| ||||| || |
Sbjct 6836 CAAAGTCACAACGTAAACCCTCATCTCTGCTAGTAAGTTCATAGGAAAATGTGAGGCCAG 6895
Query 24199 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTC 24258
|||| || || | || || ||||| ||||| || ||||| | ||||||||||| || |
Sbjct 6896 GCATCAGTCCTCATTTCTTTAGCCAGAATATCGATGCAAAAAAACCAGAAAAGAAGATGC 6955
Query 24259 CTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCGCTGTCATGTATCC 24315
|||| ||||| |||||||| | || |||||| || | | | |||| ||||
Sbjct 6956 CTTCCACTGCGGCAAAGGCTACAACATGTTCTCCGTAGGTAGCCTCTTTGTCCCCAATCC 7015
Query 24316 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGA 24375
| | |||||| |||||| | | ||||||||||| || || || ||||| ||||
Sbjct 7016 AACACAAGGTCCAATCCGCCTTCATCTAGACACAAGGCATCGTTTCAATGGCATTGAAGA 7075
Query 24376 GATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCG 24435
|| | | |||| ||| |||||||| || || ||||| |||||||||||||| | |
Sbjct 7076 GAAATTCCCTTTCTTTAGAATCTTTAATGTAAGTGTCAATAAAAAGACTATACATCTTAG 7135
Query 24436 AATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTA 24495
|||| ||||||| |||| ||||| || || |||||||| ||| || |||| |
Sbjct 7136 AATGCATGTTTTTTGTGGCAATTTGGAAGCCATAGAAACA-GTAGGCT------TCTGAA 7188
Query 24496 CTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 24555
||||| | ||| | | | || || ||||| ||| | | |||||| |||||||| |
Sbjct 7189 CTTCTTGGCCAAAATGCGCCACCAAGTTGTCATTTACTGTGCTGTCACTTGCTGCAAAGA 7248
Query 24556 ACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGA 24615
| |||| ||| | ||| |||| | | | || || | | | ||| | | |
Sbjct 7249 AAGCCAGAACACGAGATATGAAATGTCTCTTCTCAGGCTTCTGGGCTTCCCAGTGCTAAA 7308
Query 24616 TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 24675
| || || || | |||||| || ||| | |||||||| || | ||| || || |||||||
Sbjct 7309 TGTCCTTGGAAAGATCCACCTCCTCCGCCGTCCAAAAGGAAGGCTCAGCTTTCTTATACA 7368
Query 24676 TATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715
| ||| || ||||| |||| ||| || || || |||||
Sbjct 7369 TTCACCAAATATCATGGTATTCAATAGGGAAGATGACAAA 7408
>seq1615235
Length=3244
Score = 120 bits (132), Expect = 3e-22
Identities = 108/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216
|||| ||||| ||||| | ||| |||||||| ||||| || ||||| || || || || |
Sbjct 3113 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 3054
Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276
| ||||| ||||| || ||||| || ||||||||||| || ||||| ||||| |||||||
Sbjct 3053 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 2994
Query 24277 CAATAAGTCTTTCTCC 24292
| | || | ||||||
Sbjct 2993 CTACAACACGTTCTCC 2978
Score = 105 bits (116), Expect = 8e-18
Identities = 87/106 (82%), Gaps = 0/106 (0%)
Strand=Plus/Minus
Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454
|||||||| || || ||||| | |||||||||||||| ||||| |||||||| |||||
Sbjct 1373 ATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 1314
Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500
||||| || || |||||||| | ||| || |||||||| ||||||
Sbjct 1313 AATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTCT 1268
>seq1725941
Length=6718
Score = 113 bits (124), Expect = 5e-20
Identities = 106/135 (79%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084
|| |||||||||||| |||||||| |||||||||||||| | || ||||| |||| |
Sbjct 3043 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGATCCCTGGCACG 3102
Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144
||||| || |||||||| ||||| || | ||| |||||| | | || || ||||||||
Sbjct 3103 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTGAATGCCA 3162
Query 54145 CGGTTCCAAGTATAT 54159
|| |||| ||| ||
Sbjct 3163 AGGCTCCAGGTAGAT 3177
>seq1599774
Length=14829
Score = 113 bits (124), Expect = 5e-20
Identities = 107/137 (78%), Gaps = 0/137 (0%)
Strand=Plus/Minus
Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209
|| ||||||||||| |||| ||||| ||||| || || || ||||| || ||||| |
Sbjct 6603 ACCTGAAATTCTCCTGACAGGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 6544
Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269
||||||||||| |||| || ||||||||||| ||||| ||||| || || | | ||||
Sbjct 6543 GACTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 6484
Query 53270 CTATTTCTAAGACCGTA 53286
|| ||||| | ||| ||
Sbjct 6483 CTGTTTCTTATACCATA 6467
Score = 111 bits (122), Expect = 2e-19
Identities = 127/171 (74%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934
|||| ||||| || |||||||| || |||||| ||| | || || || |||||||| |
Sbjct 8989 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 8930
Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994
||| ||| || |||||||| ||||| || || || || || ||||| || | | || |
Sbjct 8929 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTTT 8870
Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 53045
| || | |||||||| | ||||||||||| | |||| | || || ||||
Sbjct 8869 TCTGAGAGATTTCCCATACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 8819
>seq1700391
Length=5054
Score = 111 bits (122), Expect = 2e-19
Identities = 105/134 (78%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218
|| || || || || | ||| |||||||| |||||||| ||||| || || | ||| ||
Sbjct 3239 TCATCCCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCTTT 3298
Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 24278
||||| ||||| | ||||| ||||| || ||||||||||||||||| || ||||||||
Sbjct 3299 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCG 3358
Query 24279 ATAAGTCTTTCTCC 24292
| | |||||| ||
Sbjct 3359 ACCACTCTTTCCCC 3372
>seq2307158
Length=1450
Score = 84.2 bits (92), Expect = 2e-11
Identities = 114/159 (72%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 54404 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 54463
||||| | ||| | || | || || ||||| || | ||||||||||| || ||||||
Sbjct 332 CTAGAAAGTTGTGGGCGGTTGGTACCAGCATTGAAGAGAGTAGGAGAAGCATGAGTAAAC 273
Query 54464 CATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATT 54523
|| | |||||||| || || || || || || || | || || || || |||||
Sbjct 272 CACCTCTCAGAAAGAAGGTTATATGTTTCAATTGCAGCATCAATGTCTTCTTTGTGAATC 213
Query 54524 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 54562
||||| | || | ||| ||||| ||||| |||||||||
Sbjct 212 CCTACAGATACTCTCATCAACATATGCTGTGGTCTTTCA 174
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 569740405316400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |