Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq1557410 264 1e-65 seq1615235 120 3e-22 seq1725941 113 5e-20 seq1599774 113 5e-20 seq1700391 111 2e-19 seq2307158 84.2 2e-11 >seq1557410 Length=8730 Score = 264 bits (292), Expect = 1e-65 Identities = 627/940 (67%), Gaps = 17/940 (2%) Strand=Plus/Plus Query 23785 TTCTTTAA-AAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCC 23840 ||| |||| |||||| |||| || | |||| ||| ||| | || ||||| |||||| Sbjct 6477 TTCATTAAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCC 6536 Query 23841 ATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATA 23900 || | || ||| || || | || || || || || || || ||||| | ||| ||| Sbjct 6537 ATCCTCTGACATTTGCCTACTCTCTTCTCAAAGAAGTTGGTCTTTCCTTCCAGTGAAATA 6596 Query 23901 TTTTCCATGAAATCGGATGGATTGGTAACATTATAGATTCTTT-TAAATCCCAATTCAGA 23959 || ||||| || || ||||||| || | | | ||| | || |||| ||| Sbjct 6597 TTCTCCATAAAGTCAAATGGATTTTCTAC-TCGGAAAACCTTGCTGAAACCCAGTTCCAG 6655 Query 23960 AATCAATCTATCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATT-CATTCCTA 24018 | | ||| ||||| |||||||| | || | ||| | ||||| ||| | | Sbjct 6656 CCTAAGTCTGTCTGCCACAAACTCAACGTACTGCTCCATTAACATGCAATTTCATCGCAA 6715 Query 24019 TAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTA 24078 | || || | | ||| |||| ||||| || ||||| || || || | | | Sbjct 6716 AGTGCTTCACCAGCAAGGCCTCAGTGAGAAACTCCTGTTCTATCCTAACAGCATTGCTAA 6775 Query 24079 TAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATG 24138 | || | ||||| | | || ||| | | | ||||| ||||||| || | Sbjct 6776 TTATTTCTTTTACTCTCTGCTCTAATGGTTTGTGTACCAGGTGTTTGAACATCAGGCAGG 6835 Query 24139 CGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGG 24198 | || || || ||| |||||| ||||| ||| | | ||| | |||||| ||||| || | Sbjct 6836 CAAAGTCACAACGTAAACCCTCATCTCTGCTAGTAAGTTCATAGGAAAATGTGAGGCCAG 6895 Query 24199 GCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTC 24258 |||| || || | || || ||||| ||||| || ||||| | ||||||||||| || | Sbjct 6896 GCATCAGTCCTCATTTCTTTAGCCAGAATATCGATGCAAAAAAACCAGAAAAGAAGATGC 6955 Query 24259 CTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCGCTGTCATGTATCC 24315 |||| ||||| |||||||| | || |||||| || | | | |||| |||| Sbjct 6956 CTTCCACTGCGGCAAAGGCTACAACATGTTCTCCGTAGGTAGCCTCTTTGTCCCCAATCC 7015 Query 24316 ACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGA 24375 | | |||||| |||||| | | ||||||||||| || || || ||||| |||| Sbjct 7016 AACACAAGGTCCAATCCGCCTTCATCTAGACACAAGGCATCGTTTCAATGGCATTGAAGA 7075 Query 24376 GATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCG 24435 || | | |||| ||| |||||||| || || ||||| |||||||||||||| | | Sbjct 7076 GAAATTCCCTTTCTTTAGAATCTTTAATGTAAGTGTCAATAAAAAGACTATACATCTTAG 7135 Query 24436 AATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTA 24495 |||| ||||||| |||| ||||| || || |||||||| ||| || |||| | Sbjct 7136 AATGCATGTTTTTTGTGGCAATTTGGAAGCCATAGAAACA-GTAGGCT------TCTGAA 7188 Query 24496 CTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 24555 ||||| | ||| | | | || || ||||| ||| | | |||||| |||||||| | Sbjct 7189 CTTCTTGGCCAAAATGCGCCACCAAGTTGTCATTTACTGTGCTGTCACTTGCTGCAAAGA 7248 Query 24556 ACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGA 24615 | |||| ||| | ||| |||| | | | || || | | | ||| | | | Sbjct 7249 AAGCCAGAACACGAGATATGAAATGTCTCTTCTCAGGCTTCTGGGCTTCCCAGTGCTAAA 7308 Query 24616 TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 24675 | || || || | |||||| || ||| | |||||||| || | ||| || || ||||||| Sbjct 7309 TGTCCTTGGAAAGATCCACCTCCTCCGCCGTCCAAAAGGAAGGCTCAGCTTTCTTATACA 7368 Query 24676 TATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 | ||| || ||||| |||| ||| || || || ||||| Sbjct 7369 TTCACCAAATATCATGGTATTCAATAGGGAAGATGACAAA 7408 >seq1615235 Length=3244 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| ||||| | ||| |||||||| ||||| || ||||| || || || || | Sbjct 3113 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 3054 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| ||||| || ||||| || ||||||||||| || ||||| ||||| ||||||| Sbjct 3053 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 2994 Query 24277 CAATAAGTCTTTCTCC 24292 | | || | |||||| Sbjct 2993 CTACAACACGTTCTCC 2978 Score = 105 bits (116), Expect = 8e-18 Identities = 87/106 (82%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 24395 ATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 24454 |||||||| || || ||||| | |||||||||||||| ||||| |||||||| ||||| Sbjct 1373 ATCTTTAATGTAAGTGTCAATAAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 1314 Query 24455 CATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500 ||||| || || |||||||| | ||| || |||||||| |||||| Sbjct 1313 AATTTGGAAGCCATAGAAACAGCGAGCTTCTGTAATCTGAACTTCT 1268 >seq1725941 Length=6718 Score = 113 bits (124), Expect = 5e-20 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || |||||||||||| |||||||| |||||||||||||| | || ||||| |||| | Sbjct 3043 CTCCACTCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGATCCCTGGCACG 3102 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 ||||| || |||||||| ||||| || | ||| |||||| | | || || |||||||| Sbjct 3103 CTGTTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTGAATGCCA 3162 Query 54145 CGGTTCCAAGTATAT 54159 || |||| ||| || Sbjct 3163 AGGCTCCAGGTAGAT 3177 >seq1599774 Length=14829 Score = 113 bits (124), Expect = 5e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||||||||| |||| ||||| ||||| || || || ||||| || ||||| | Sbjct 6603 ACCTGAAATTCTCCTGACAGGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 6544 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 ||||||||||| |||| || ||||||||||| ||||| ||||| || || | | |||| Sbjct 6543 GACTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 6484 Query 53270 CTATTTCTAAGACCGTA 53286 || ||||| | ||| || Sbjct 6483 CTGTTTCTTATACCATA 6467 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| ||||| || |||||||| || |||||| ||| | || || || |||||||| | Sbjct 8989 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATATGGATGT 8930 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 ||| ||| || |||||||| ||||| || || || || || ||||| || | | || | Sbjct 8929 TCAAAGACTGGCTTTGATCAATGAAAGCACCTCTCTCGGCTGCCATCTTGAGAACAGTTT 8870 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 53045 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 8869 TCTGAGAGATTTCCCATACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 8819 >seq1700391 Length=5054 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || || || || || | ||| |||||||| |||||||| ||||| || || | ||| || Sbjct 3239 TCATCCCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTCTTCTTT 3298 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 24278 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 3299 AGCCAGAATATAGCAGCAAAAGATCCCGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCG 3358 Query 24279 ATAAGTCTTTCTCC 24292 | | |||||| || Sbjct 3359 ACCACTCTTTCCCC 3372 >seq2307158 Length=1450 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 54404 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 54463 ||||| | ||| | || | || || ||||| || | ||||||||||| || |||||| Sbjct 332 CTAGAAAGTTGTGGGCGGTTGGTACCAGCATTGAAGAGAGTAGGAGAAGCATGAGTAAAC 273 Query 54464 CATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGAATT 54523 || | |||||||| || || || || || || || | || || || || ||||| Sbjct 272 CACCTCTCAGAAAGAAGGTTATATGTTTCAATTGCAGCATCAATGTCTTCTTTGTGAATC 213 Query 54524 CCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 54562 ||||| | || | ||| ||||| ||||| ||||||||| Sbjct 212 CCTACAGATACTCTCATCAACATATGCTGTGGTCTTTCA 174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569740405316400