Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012
-01-05] 3,231,305 sequences; 2,855,365,987 total letters
Query= NC_001731.1
Length=190289
Score E
Sequences producing significant alignments: (Bits) Value
seq2306935 260 2e-64
seq3018268 154 2e-32
seq790091 131 2e-25
seq1962750 87.8 2e-12
>seq2306935
Length=1684
Score = 260 bits (288), Expect = 2e-64
Identities = 258/334 (77%), Gaps = 0/334 (0%)
Strand=Plus/Minus
Query 83060 AGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGCACG 83119
||||| || ||||| ||||| | | | | |||| | | || ||||||||||||||||
Sbjct 510 AGGGCTTCAATGTCTGGCTCAATGTCGATGGTCGGAAATCGCCGGCTGTACCTGCGCACA 451
Query 83120 GGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCAC 83179
|| ||||| | ||||||| ||||||||| |||||||| || | ||||||||| |||
Sbjct 450 GGTACACCGTCGGGCCCCACCAGGAACTTCTCAAAGTTCCACGCAATGTCGTTGCGACAC 391
Query 83180 ACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGC 83239
|| |||||||||| |||| || |||||| ||| ||||| | ||||||||| ||
Sbjct 390 ACCGGAGACCAGGTGATGAACTTGGGGTCAGTCATGAGCGCAGTGGCGTCGTCGCTGGGA 331
Query 83240 GCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCG 83299
|| |||||||| || || |||||||| |||||||| |||||| | ||||| || ||||||
Sbjct 330 GCTGGCAGGGCTTCCCGAAGGAAGGCAAAGAGCGGGTGTGCCTTCGCACCATTCACCTCG 271
Query 83300 CACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGG 83359
|||||||||||||| | ||||| |||||||| ||| || || ||||||| ||| |||
Sbjct 270 CACTTCTCGAAGAGAGTGAAGTTGGGCTCGAACCCGCCGCCGGGTCGGACGTACTTGAGG 211
Query 83360 GAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393
||| || ||||| | ||| |||||| ||||
Sbjct 210 GAATTCAGAATCTCTTCGTTCCTGGCGTTCTCCT 177
>seq3018268
Length=273
Score = 154 bits (170), Expect = 2e-32
Identities = 210/293 (72%), Gaps = 25/293 (9%)
Strand=Plus/Plus
Query 83148 TCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGT 83207
|||| |||||||| || | |||||| |||||||| || ||||||| |||| || |||||
Sbjct 1 TCTCAAAGTTCCACGCAATGTCGTTTCGGCACACCGGGGACCAGGTGATGAACTTGGGGT 60
Query 83208 CGCTCACGAGCGTGCT--CATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGC 83265
| || ||| | | ||||||| || ||||| |||||||| || || ||||||||
Sbjct 61 CAGTCGTGAGTGCAGTGGCATGTCG---CTGGGCGCTGGCAGGGCTTCCCGGAGGAAGGC 117
Query 83266 GAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGG 83325
|||||||| || || | || || || |||| ||||||||||||||| | |||||
Sbjct 118 AAAGAGCGGGTG-GCTTTCGCGCCCTTCACCTGGCACTTCTCGAAGAGAGTGAAGTT--- 173
Query 83326 CTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGC 83385
|| ||||||| ||| |||||| || ||||| | |||| |||
Sbjct 174 ---------------GGGTCGGACGTACTTGAGGGAATTCAGAATCTCTTCGTTCTTGGC 218
Query 83386 GTTTTCCTGGTGACCGAACTGGTTAC-ACGGGAACCCAAGCACTACCAGCCCC 83437
||| ||||| || || ||||||| | ||||||| |||||| | ||||| |||
Sbjct 219 GTTCTCCTGATGCCCAAACTGGTGGCAACGGGAAGCCAAGCGCGACCAGGCCC 271
>seq790091
Length=277
Score = 131 bits (144), Expect = 2e-25
Identities = 197/278 (71%), Gaps = 23/278 (8%)
Strand=Plus/Minus
Query 83247 GGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCACTTCT 83306
|||| | || ||| |||| |||||||| || ||| | || ||||| |||| ||||||||
Sbjct 277 GGGCTCCCCGAAGGCAGGCAAAGAGCGGGTG-GCCTTCGCGCCGTTCACCTGGCACTTCT 219
Query 83307 CGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCA 83366
||||||| | ||||| || ||||||| ||| |||||| ||
Sbjct 218 CGAAGAGAGTGAAGTTGGGT------------------CGGACGTACTTGAGGGAATTCA 177
Query 83367 AGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCA 83426
||||| | |||| |||||| ||||| || || ||||||| || |||| ||||||
Sbjct 176 GAATCTCTTCGTTCTTGGCGTTCTCCTGATGCCCAAACTGGTGGCAACGGAAGCCAAGCG 117
Query 83427 CTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGA 83486
| ||||| ||| | || || |||| |||||||||||||||| | | | | | ||| |||
Sbjct 116 CGACCAGGCCCGG-GC-CCGAGGCACCGCTGCAGCTCGTTCCTGCGGGCGCAGTCCGGGA 59
Query 83487 CCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGC 83524
|||| | || ||||||| ||| || ||||| ||||
Sbjct 58 -CGTG-TGCCCCAGAGGGCCGCCGCGCTCTCGGGGAGC 23
>seq1962750
Length=396
Score = 87.8 bits (96), Expect = 2e-12
Identities = 75/93 (81%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116
|||||||| || ||||| ||||| | | | | |||| | |||| ||||||||||||||
Sbjct 304 AGCAGGGCTTCAATGTCTGGCTCGATGTCTATGGTCGGAAAGCGACGGCTGTACCTGCGC 363
Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTC 83149
|||||| ||||||| |||||||| |||||||
Sbjct 364 ACGGGCACACCGTCAGGACCCACCAGGAACTTC 396
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 584206698202200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |