Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq2306935 260 2e-64 seq3018268 154 2e-32 seq790091 131 2e-25 seq1962750 87.8 2e-12 >seq2306935 Length=1684 Score = 260 bits (288), Expect = 2e-64 Identities = 258/334 (77%), Gaps = 0/334 (0%) Strand=Plus/Minus Query 83060 AGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGCACG 83119 ||||| || ||||| ||||| | | | | |||| | | || |||||||||||||||| Sbjct 510 AGGGCTTCAATGTCTGGCTCAATGTCGATGGTCGGAAATCGCCGGCTGTACCTGCGCACA 451 Query 83120 GGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCAC 83179 || ||||| | ||||||| ||||||||| |||||||| || | ||||||||| ||| Sbjct 450 GGTACACCGTCGGGCCCCACCAGGAACTTCTCAAAGTTCCACGCAATGTCGTTGCGACAC 391 Query 83180 ACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGC 83239 || |||||||||| |||| || |||||| ||| ||||| | ||||||||| || Sbjct 390 ACCGGAGACCAGGTGATGAACTTGGGGTCAGTCATGAGCGCAGTGGCGTCGTCGCTGGGA 331 Query 83240 GCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCG 83299 || |||||||| || || |||||||| |||||||| |||||| | ||||| || |||||| Sbjct 330 GCTGGCAGGGCTTCCCGAAGGAAGGCAAAGAGCGGGTGTGCCTTCGCACCATTCACCTCG 271 Query 83300 CACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGG 83359 |||||||||||||| | ||||| |||||||| ||| || || ||||||| ||| ||| Sbjct 270 CACTTCTCGAAGAGAGTGAAGTTGGGCTCGAACCCGCCGCCGGGTCGGACGTACTTGAGG 211 Query 83360 GAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393 ||| || ||||| | ||| |||||| |||| Sbjct 210 GAATTCAGAATCTCTTCGTTCCTGGCGTTCTCCT 177 >seq3018268 Length=273 Score = 154 bits (170), Expect = 2e-32 Identities = 210/293 (72%), Gaps = 25/293 (9%) Strand=Plus/Plus Query 83148 TCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGT 83207 |||| |||||||| || | |||||| |||||||| || ||||||| |||| || ||||| Sbjct 1 TCTCAAAGTTCCACGCAATGTCGTTTCGGCACACCGGGGACCAGGTGATGAACTTGGGGT 60 Query 83208 CGCTCACGAGCGTGCT--CATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGC 83265 | || ||| | | ||||||| || ||||| |||||||| || || |||||||| Sbjct 61 CAGTCGTGAGTGCAGTGGCATGTCG---CTGGGCGCTGGCAGGGCTTCCCGGAGGAAGGC 117 Query 83266 GAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGG 83325 |||||||| || || | || || || |||| ||||||||||||||| | ||||| Sbjct 118 AAAGAGCGGGTG-GCTTTCGCGCCCTTCACCTGGCACTTCTCGAAGAGAGTGAAGTT--- 173 Query 83326 CTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGC 83385 || ||||||| ||| |||||| || ||||| | |||| ||| Sbjct 174 ---------------GGGTCGGACGTACTTGAGGGAATTCAGAATCTCTTCGTTCTTGGC 218 Query 83386 GTTTTCCTGGTGACCGAACTGGTTAC-ACGGGAACCCAAGCACTACCAGCCCC 83437 ||| ||||| || || ||||||| | ||||||| |||||| | ||||| ||| Sbjct 219 GTTCTCCTGATGCCCAAACTGGTGGCAACGGGAAGCCAAGCGCGACCAGGCCC 271 >seq790091 Length=277 Score = 131 bits (144), Expect = 2e-25 Identities = 197/278 (71%), Gaps = 23/278 (8%) Strand=Plus/Minus Query 83247 GGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACCTCGCACTTCT 83306 |||| | || ||| |||| |||||||| || ||| | || ||||| |||| |||||||| Sbjct 277 GGGCTCCCCGAAGGCAGGCAAAGAGCGGGTG-GCCTTCGCGCCGTTCACCTGGCACTTCT 219 Query 83307 CGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCA 83366 ||||||| | ||||| || ||||||| ||| |||||| || Sbjct 218 CGAAGAGAGTGAAGTTGGGT------------------CGGACGTACTTGAGGGAATTCA 177 Query 83367 AGATCTCGGCATTCTGGGCGTTTTCCTGGTGACCGAACTGGTTACACGGGAACCCAAGCA 83426 ||||| | |||| |||||| ||||| || || ||||||| || |||| |||||| Sbjct 176 GAATCTCTTCGTTCTTGGCGTTCTCCTGATGCCCAAACTGGTGGCAACGGAAGCCAAGCG 117 Query 83427 CTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGA 83486 | ||||| ||| | || || |||| |||||||||||||||| | | | | | ||| ||| Sbjct 116 CGACCAGGCCCGG-GC-CCGAGGCACCGCTGCAGCTCGTTCCTGCGGGCGCAGTCCGGGA 59 Query 83487 CCGTGCTACCTCAGAGGGACGCTACGTTCTCGATGAGC 83524 |||| | || ||||||| ||| || ||||| |||| Sbjct 58 -CGTG-TGCCCCAGAGGGCCGCCGCGCTCTCGGGGAGC 23 >seq1962750 Length=396 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| || ||||| ||||| | | | | |||| | |||| |||||||||||||| Sbjct 304 AGCAGGGCTTCAATGTCTGGCTCGATGTCTATGGTCGGAAAGCGACGGCTGTACCTGCGC 363 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTC 83149 |||||| ||||||| |||||||| ||||||| Sbjct 364 ACGGGCACACCGTCAGGACCCACCAGGAACTTC 396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584206698202200