Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq1627958 98.7 8e-16 seq2677557 95.1 1e-14 seq1549142 91.5 1e-13 seq1537392 91.5 1e-13 seq2031399 84.2 2e-11 >seq1627958 Length=3316 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 20967 ACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCC 21026 |||| |||| |||||||| || | ||||| ||||| | || ||| | | || ||| Sbjct 302 ACCAAGTGCAGGGTGGACTCTTTCTAGATGTTGTAGTCAGACACGGTGCGTCCATCTTCC 243 Query 21027 AGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCG 21086 |||||||| || ||| | || | |||||||| || ||| | |||||||||||| | Sbjct 242 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGATCAGGGGGGATGCCTTCCTTGTCTTGG 183 Query 21087 ATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTG 21146 |||||| || || | | | || |||| |||||| ||| | ||| |||| |||| Sbjct 182 ATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACTTCAAGGGTGATGGCCTTG 123 Query 21147 CCGGTTAACGTTTTGACAAATATTTGCAT 21175 || || | || || ||||| || ||||| Sbjct 122 CCAGTCAGGGTCTTCACAAAGATCTGCAT 94 >seq2677557 Length=202 Score = 95.1 bits (104), Expect = 1e-14 Identities = 132/184 (72%), Gaps = 1/184 (1%) Strand=Plus/Plus Query 20992 GAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTC 21051 ||||||| ||||| | || || ||| | ||||||||| ||||||| ||| | || || | Sbjct 6 GAATGTTGTAGTCGGAAAGAGTGTGGCCATCCTCCAGCCGTTTGCCTGCAAATATCAGAC 65 Query 21052 TCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAG 21111 ||||||||| ||| | ||| |||||||| ||| || ||| || | ||| | Sbjct 66 ACTGCTGGTCGGGGGG-ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACGTTCTCGATGG 124 Query 21112 TATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTT 21171 | |||| ||||||| || | ||| ||||||||||| || | || || || || || | Sbjct 125 TGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCT 184 Query 21172 GCAT 21175 |||| Sbjct 185 GCAT 188 >seq1549142 Length=19220 Score = 91.5 bits (100), Expect = 1e-13 Identities = 156/225 (69%), Gaps = 1/225 (0%) Strand=Plus/Plus Query 20951 CCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAG 21010 |||| |||| | ||||||| |||| ||||||| || || ||| ||||| || Sbjct 14338 CCCT-GCAGGCAAAGCACCAGGTGCAGGCTGGACTCTTTCTGGGTGTCGTAGTCTAAAAG 14396 Query 21011 GGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCAC 21070 || ||| | || |||||||||||||||||| | || || | |||| |||| || | Sbjct 14397 AGTGTGGCCATCTTCCAGCTGTTTGCCCGCAAATATCAGACACTGCAGGTCAGGTGGGAT 14456 Query 21071 GCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTC 21130 ||| ||||||| ||| || | ||| || | | | |||||| | |||| || Sbjct 14457 GCCCTCCTTGTTTTGGATTTTGTCTTTGACATTCTCAATGATATCACTGAGCTCGACCTC 14516 Query 21131 CACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 | ||| ||||||||||| |||| || || ||||| || ||||| Sbjct 14517 AAGGGTGATGGTCTTGCCTGTTAGGGTCTTCACAAAGATCTGCAT 14561 >seq1537392 Length=19804 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 20973 TGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGT 21032 |||| |||||||| || || ||||| ||||| | |||||| || | || | || |||| Sbjct 12062 TGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGTGTCCATCTTTCACCTGT 12003 Query 21033 TTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTT 21092 || || ||| | || | |||||||| || | | |||||||||||| ||||||| Sbjct 12002 TTCCCAGCAAAGATCAAACTCTGCTGATCAGGAAGGATGCCTTCCTTGTCTTGGATCTTT 11943 Query 21093 TGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTT 21152 | | || | | | || ||| |||||| || | ||| |||||||||||||| Sbjct 11942 TCCATGACATTCTCAATGGTGTCATTGGGCTCTACCTCGAGGGTGATGGTCTTGCCGGTC 11883 Query 21153 AACGTTTTGACAAATATTTGCAT 21175 | || || ||||| || ||||| Sbjct 11882 AGGGTCTTCACAAAGATCTGCAT 11860 >seq2031399 Length=344 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || || | ||| | ||| | ||||||||||||||||||||| ||||| | | Sbjct 248 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 189 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 | || | | || ||||| || ||||| ||| |||| ||||| ||||| || || Sbjct 188 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGA 129 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | |||||||| || |||||| || || | | | ||||| ||| || Sbjct 128 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACC 69 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || | || || ||||| || || | ||||| || || || ||||| ||| Sbjct 68 TCGAGAGTGATAGTCTTCCCTGTAAGGGTTTTTACGAAAATCTGCATCTTG 18 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405629986779380