Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012
-01-05] 3,231,305 sequences; 2,855,365,987 total letters
Query= NC_001875.2
Length=131995
Score E
Sequences producing significant alignments: (Bits) Value
seq1627958 98.7 8e-16
seq2677557 95.1 1e-14
seq1549142 91.5 1e-13
seq1537392 91.5 1e-13
seq2031399 84.2 2e-11
>seq1627958
Length=3316
Score = 98.7 bits (108), Expect = 8e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 20967 ACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCC 21026
|||| |||| |||||||| || | ||||| ||||| | || ||| | | || |||
Sbjct 302 ACCAAGTGCAGGGTGGACTCTTTCTAGATGTTGTAGTCAGACACGGTGCGTCCATCTTCC 243
Query 21027 AGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCG 21086
|||||||| || ||| | || | |||||||| || ||| | |||||||||||| |
Sbjct 242 AGCTGTTTCCCGGCAAAGATCAACCTCTGCTGATCAGGGGGGATGCCTTCCTTGTCTTGG 183
Query 21087 ATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTG 21146
|||||| || || | | | || |||| |||||| ||| | ||| |||| ||||
Sbjct 182 ATCTTTGCCTTGACATTCTCAATGGTGTCACTGGGCTCGACTTCAAGGGTGATGGCCTTG 123
Query 21147 CCGGTTAACGTTTTGACAAATATTTGCAT 21175
|| || | || || ||||| || |||||
Sbjct 122 CCAGTCAGGGTCTTCACAAAGATCTGCAT 94
>seq2677557
Length=202
Score = 95.1 bits (104), Expect = 1e-14
Identities = 132/184 (72%), Gaps = 1/184 (1%)
Strand=Plus/Plus
Query 20992 GAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTC 21051
||||||| ||||| | || || ||| | ||||||||| ||||||| ||| | || || |
Sbjct 6 GAATGTTGTAGTCGGAAAGAGTGTGGCCATCCTCCAGCCGTTTGCCTGCAAATATCAGAC 65
Query 21052 TCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAG 21111
||||||||| ||| | ||| |||||||| ||| || ||| || | ||| |
Sbjct 66 ACTGCTGGTCGGGGGG-ATGCCCTCCTTGTCTTGGATTTTGGCTTTGACGTTCTCGATGG 124
Query 21112 TATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTT 21171
| |||| ||||||| || | ||| ||||||||||| || | || || || || || |
Sbjct 125 TGTCACTGGGCTCCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCT 184
Query 21172 GCAT 21175
||||
Sbjct 185 GCAT 188
>seq1549142
Length=19220
Score = 91.5 bits (100), Expect = 1e-13
Identities = 156/225 (69%), Gaps = 1/225 (0%)
Strand=Plus/Plus
Query 20951 CCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAG 21010
|||| |||| | ||||||| |||| ||||||| || || ||| ||||| ||
Sbjct 14338 CCCT-GCAGGCAAAGCACCAGGTGCAGGCTGGACTCTTTCTGGGTGTCGTAGTCTAAAAG 14396
Query 21011 GGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCAC 21070
|| ||| | || |||||||||||||||||| | || || | |||| |||| || |
Sbjct 14397 AGTGTGGCCATCTTCCAGCTGTTTGCCCGCAAATATCAGACACTGCAGGTCAGGTGGGAT 14456
Query 21071 GCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTC 21130
||| ||||||| ||| || | ||| || | | | |||||| | |||| ||
Sbjct 14457 GCCCTCCTTGTTTTGGATTTTGTCTTTGACATTCTCAATGATATCACTGAGCTCGACCTC 14516
Query 21131 CACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175
| ||| ||||||||||| |||| || || ||||| || |||||
Sbjct 14517 AAGGGTGATGGTCTTGCCTGTTAGGGTCTTCACAAAGATCTGCAT 14561
>seq1537392
Length=19804
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 20973 TGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGT 21032
|||| |||||||| || || ||||| ||||| | |||||| || | || | || ||||
Sbjct 12062 TGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGTGTCCATCTTTCACCTGT 12003
Query 21033 TTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTT 21092
|| || ||| | || | |||||||| || | | |||||||||||| |||||||
Sbjct 12002 TTCCCAGCAAAGATCAAACTCTGCTGATCAGGAAGGATGCCTTCCTTGTCTTGGATCTTT 11943
Query 21093 TGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTT 21152
| | || | | | || ||| |||||| || | ||| ||||||||||||||
Sbjct 11942 TCCATGACATTCTCAATGGTGTCATTGGGCTCTACCTCGAGGGTGATGGTCTTGCCGGTC 11883
Query 21153 AACGTTTTGACAAATATTTGCAT 21175
| || || ||||| || |||||
Sbjct 11882 AGGGTCTTCACAAAGATCTGCAT 11860
>seq2031399
Length=344
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008
|| || || || || | ||| | ||| | ||||||||||||||||||||| ||||| | |
Sbjct 248 CCACCACGAAGTCTCAACACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGAC 189
Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068
| || | | || ||||| || ||||| ||| |||| ||||| ||||| || ||
Sbjct 188 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAAATCAGTCTTTGCTGATCAGGAGGA 129
Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128
| |||||||| || |||||| || || | | | ||||| ||| ||
Sbjct 128 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATTGTATCCGAGGGTTCGACC 69
Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179
|| | || || ||||| || || | ||||| || || || ||||| |||
Sbjct 68 TCGAGAGTGATAGTCTTCCCTGTAAGGGTTTTTACGAAAATCTGCATCTTG 18
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 405629986779380
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