Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012
-01-05] 3,231,305 sequences; 2,855,365,987 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq1557410 176 4e-39
seq1627958 122 9e-23
seq2677557 105 7e-18
seq1292660 102 8e-17
seq1549142 100 3e-16
seq1537392 100 3e-16
seq2031399 96.9 3e-15
seq1581579 96.9 3e-15
seq2955825 95.1 1e-14
seq2929101 95.1 1e-14
seq1715087 95.1 1e-14
>seq1557410
Length=8730
Score = 176 bits (194), Expect = 4e-39
Identities = 427/641 (67%), Gaps = 13/641 (2%)
Strand=Plus/Minus
Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635
|| || |||||| | || ||||||| | || || || ||||| || |||||| ||
Sbjct 7438 GAACCACTGCTGAGAGAAAACCCCCAGCACTTTGTCATCTTCCCTATTGAATACCATGAT 7379
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| ||| | ||||| || || || ||| | || || ||||| | ||||||||||| ||
Sbjct 7378 ATTTGGTGAATGTATAAGAAAGCTGAGCCTTCCTTTTGGACGGCGGAGGAGGTGGATCTT 7319
Query 116696 TCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754
|||||||||| ||| ||||||| | ||| | || | |||||||| | |
Sbjct 7318 TCCAAGGACATTTAGC-ACTGGGAAGCCCAGAAGCCTGAGAAGAGACATTTCAT--ATCT 7262
Query 116755 CGTG--CTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812
|||| ||||| || || || || || ||| ||| || || || || |||| | || |
Sbjct 7261 CGTGTTCTGGCTTTCTTTGCAGCAAGTGACAGCACAGTAAATGACAACTTGGTGGCGCAT 7202
Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872
|| | || || || ||| | || | || ||||| ||||| || || ||||
Sbjct 7201 TTTGGCCAAGAAGTTCAGAAG-CCTAC------TGTTTCTATGGCTTCCAAATTGCCACA 7149
Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAG 116932
| ||| |||| || | |||||| | || ||||| ||| | ||| |
Sbjct 7148 AAAAACATGCATTCTAAGATGTATAGTCTTTTTATTGACACTTACATTAAAGATTCTAAA 7089
Query 116933 GAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAG 116992
|| | | | | || || ||||| || |||||||| || ||| | |||||| ||
Sbjct 7088 GAAAGGGAATTTCTCTTCAATGCCATTGAAACGATGCCTTGTGTCTAGATGAAGGCGGAT 7029
Query 116993 TGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTC 117052
||| | || | ||||| | | || |||||| ||| ||| || | | || |||||
Sbjct 7028 TGGACCTTGTGTTGGATTGGGGACAAAGAGGCTACCTACGGAGAACATGTTGTAGCCTTT 6969
Query 117053 GCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAA 117112
|| || || || ||| |||||||||| || ||| || | ||||| ||||| ||||||
Sbjct 6968 GCCGCAGTGGAAGGCATCTTCTTTTCTGGTTTTTTTGCATCGATATTCTGGCTAAAGAAA 6909
Query 117113 CGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTG 117172
| || || ||||| ||||| || || | | || || | ||| || |||||| |
Sbjct 6908 TGAGGACTGATGCCTGGCCTCACATTTTCCTATGAACTTACTAGCAGAGATGAGGGTTTA 6849
Query 117173 CATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCA 117213
| ||| ||||||||||| || ||||||| || |||| ||
Sbjct 6848 CGTTGTGACTTTGCCTGCCTGATGTTCAAACACCTGGTACA 6808
>seq1627958
Length=3316
Score = 122 bits (134), Expect = 9e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || || || ||||| |||||||| | || ||||| |||
Sbjct 94 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGGCCATCACCCTTGAAGTCGAGCCCAGT 153
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | |||||| ||| || | ||||| || ||||||||| | || |||
Sbjct 154 GACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCCCCTGATCAG 213
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| | | |||| || || ||||||||||| || | |||||| | |||||||||
Sbjct 214 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGACGCACCGTGTCTGACTACAAC 273
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
||| |||| ||| |||| ||||| | || ||| |||| ||||| ||
Sbjct 274 ATCTAGAAAGAGTCCACCCTGCACTTGGTCTTGTGCTTCAGGGGAGG 320
>seq2677557
Length=202
Score = 105 bits (116), Expect = 7e-18
Identities = 139/189 (74%), Gaps = 3/189 (2%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || ||||| || || || || ||||| ||||||||| |||| || || |||
Sbjct 188 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTGGAGCCCAGT 129
Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808
|||| | | | |||| |||| | ||||| | ||||| |||||||||||| | |||||
Sbjct 128 GACACCATCGAGAACG-TCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCC-CCGACCA 71
Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868
||| | || || | || ||||||| |||||| || | | ||| || |||||||||
Sbjct 70 GCAGTGTCTGATATTTGCAGGCAAACGGCTGGAGGATGGCCACACTCTTTCCGACTACAA 11
Query 40869 CATCCAGAA 40877
||| | |||
Sbjct 10 CATTCGGAA 2
>seq1292660
Length=282
Score = 102 bits (112), Expect = 8e-17
Identities = 137/188 (73%), Gaps = 2/188 (1%)
Strand=Plus/Minus
Query 40717 GGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCG-TGCAAACGCTCAAGGAAAA 40775
||||| ||||||||| |||| ||| | ||| |||| | || || | |||||| ||
Sbjct 281 GGCAAGACCATCACCCTCGAGGTCAAGCCCAGTGACACCACTGAGAATG-TCAAGGCCAA 223
Query 40776 AATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACA 40835
||||| | ||| ||||||||||| ||||| || | || || | || ||||||||
Sbjct 222 AATTCAAGCCAAGGAGGGCATCCCACTTGACCAACAGTGTCTGATATTTGCAGGCAAACA 163
Query 40836 GCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCT 40895
|||||| || | ||||| ||| |||| |||||||||||| ||| ||| ||||| ||
Sbjct 162 GCTGGAGGATGGCCGCACTCTCTCAGACTGCAACATCCAGAAAGAGTCCATCCTGCACCT 103
Query 40896 AGTGTTGC 40903
| | |||
Sbjct 102 GGGGCTGC 95
>seq1549142
Length=19220
Score = 100 bits (110), Expect = 3e-16
Identities = 159/228 (70%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || || || ||||| ||||||||| | || ||||| ||
Sbjct 14561 ATGCAGATCTTTGTGAAGACCCTAACAGGCAAGACCATCACCCTTGAGGTCGAGCTCAGT 14502
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|| | | | | | |||| || ||||| | |||| ||||||||||| | |||| |
Sbjct 14501 GATATCATTGAGAATGTCAAAGACAAAATCCAAAACAAGGAGGGCATCCCACCTGACCTG 14442
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| | || || | ||||||||||||||||| || | | ||| || |||||| ||
Sbjct 14441 CAGTGTCTGATATTTGCGGGCAAACAGCTGGAAGATGGCCACACTCTTTTAGACTACGAC 14382
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917
| |||||| ||| ||| ||||| || ||| | || || |||| ||
Sbjct 14381 ACCCAGAAAGAGTCCAGCCTGCACCTGGTGCTTTGCCTGCAGGGCAGC 14334
>seq1537392
Length=19804
Score = 100 bits (110), Expect = 3e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749
||||| || || || || || || || ||||| ||||||||| |||| || || |||
Sbjct 11860 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTAGAGCCCAAT 11919
Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
|||| | | | | ||| |||||| || | ||||| || ||||||| | || |||
Sbjct 11920 GACACCATTGAGAATGTCATGGAAAAGATCCAAGACAAGGAAGGCATCCTTCCTGATCAG 11979
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| | | |||| || || |||||| || | || | | |||||| |||||||||
Sbjct 11980 CAGAGTTTGATCTTTGCTGGGAAACAGGTGAAAGATGGACACACCCTGTCTGACTACAAC 12039
Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892
|||||||| ||| |||| |||||
Sbjct 12040 ATCCAGAAAGAGTCCACCCTGCA 12062
>seq2031399
Length=344
Score = 96.9 bits (106), Expect = 3e-15
Identities = 151/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746
|| ||||| || ||||||||||| || || || || || ||||| |||| |||||| ||
Sbjct 19 AAGATGCAGATTTTCGTAAAAACCCTTACAGGGAAGACTATCACTCTCGAGGTCGAACCC 78
Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
| || | | ||| | |||| || || | || || || || || || | ||
Sbjct 79 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 138
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
|||||| |||| || | || ||||| || ||||| || | || || | ||||||
Sbjct 139 CAGCAAAGACTGATTTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 198
Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902
||||| || |||||| |||| || ||||| ||||||
Sbjct 199 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTG 234
>seq1581579
Length=3724
Score = 96.9 bits (106), Expect = 3e-15
Identities = 156/222 (70%), Gaps = 2/222 (1%)
Strand=Plus/Plus
Query 40696 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGC 40755
|| ||| | || || | || ||||| | ||||||| || | || || ||| |||| |
Sbjct 2806 ATCTTCCTGAAGACCTTGACTGGCAAGATCATCACCCTCAAGGTTGAGTCCAGTGACACC 2865
Query 40756 G-TGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACG 40814
|| ||| | |||||| ||| || | ||||| || | |||||| | || ||||| |
Sbjct 2866 ACTGGAAATG-TCAAGGCAAAGATCCAAGACAAGGAAGACATCCCTTCCGATCAGCAGGG 2924
Query 40815 ACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCA 40874
| |||| || | || ||||||| | | ||||||||| ||||||||||||||
Sbjct 2925 GTTGATCTTTGCCAGGAAGTAGCTGGAACATGGGCGCACCCTGTCTGACTACAACATCCA 2984
Query 40875 GAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916
||| ||| ||| ||||| || || || |||||||||| ||
Sbjct 2985 GAAAGAGTTCACCCTGCACCTGGTCCTGAGCTTGAGGGGAGG 3026
>seq2955825
Length=1785
Score = 95.1 bits (104), Expect = 1e-14
Identities = 138/191 (72%), Gaps = 3/191 (2%)
Strand=Plus/Plus
Query 40729 ACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAA 40787
||| | || ||| | ||| |||||| || | |||| |||| | ||||| | | |||
Sbjct 1 ACCCTTGAGGTCAAGCCCAGTGACAGCATGGAGAACG-TCAAAGCCAAAATCCAAGGCAA 59
Query 40788 AGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGA 40847
||||||||||| | ||||||| || || || | || |||||||||||||| || |
Sbjct 60 GGAGGGCATCCCACCTCACCAGCAGCGTCTAATATTTGCAGGCAAACAGCTGGAGGATGG 119
Query 40848 GCGCAC-CCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCT 40906
|||| | || ||||||||||||||||| ||| |||| |||| || ||| | | |
Sbjct 120 CTGCACTCGTCTCAGACTACAACATCCAGAAAGAGTCCACCCTGCTGCTGGTGCTTCACC 179
Query 40907 TGAGGGGCGGC 40917
|| | ||||||
Sbjct 180 TGCGAGGCGGC 190
>seq2929101
Length=1797
Score = 95.1 bits (104), Expect = 1e-14
Identities = 144/205 (70%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 40695 AATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAG 40754
|||||| || || || || |||||||| ||||| ||| | || ||| | ||| ||||
Sbjct 1148 AATATTGGTGAAGACCCTGACGGGCAAGACCATAACCCTTGAGGTCAAGTCCAGTGACAC 1089
Query 40755 CGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACG 40814
| | | | |||| | |||| | ||||| ||||| ||||| | |||||||| |
Sbjct 1088 CATCGAGAATGTCAAAGTCAAAACCCAAGACAAGGAGGGAATCCCACCTGACCAGCAGCA 1029
Query 40815 ACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCA 40874
|| || | ||| ||||||||||| || | ||||| || || |||||||||||
Sbjct 1028 TCTGATATTTTCGGATAAACAGCTGGAGGATGGCCGCACTCTTTCAGATTACAACATCCA 969
Query 40875 GAAGGAGGCCACGCTGCATCTAGTG 40899
| | ||| |||| ||||| || |||
Sbjct 968 GGAAGAGTCCACTCTGCACCTGGTG 944
>seq1715087
Length=7196
Score = 95.1 bits (104), Expect = 1e-14
Identities = 102/135 (76%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842
|| ||||| || |||||| | |||||||| | ||||||| || ||||| ||||||||
Sbjct 7146 GATAAAGAAGGGATCCCCCCCGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAA 7087
Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902
|| | ||||| || ||||||||||||||||| ||| | || ||||| || || |
Sbjct 7086 GATGGTCGCACTCTTTCTGACTACAACATCCAGAAAGAGTCAACCCTGCACCTGGTTCTC 7027
Query 40903 CGCTTGAGGGGCGGC 40917
|| ||||||| |||
Sbjct 7026 CGTCTGAGGGGTGGC 7012
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494408820286800
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