Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq1557410 176 4e-39 seq1627958 122 9e-23 seq2677557 105 7e-18 seq1292660 102 8e-17 seq1549142 100 3e-16 seq1537392 100 3e-16 seq2031399 96.9 3e-15 seq1581579 96.9 3e-15 seq2955825 95.1 1e-14 seq2929101 95.1 1e-14 seq1715087 95.1 1e-14 >seq1557410 Length=8730 Score = 176 bits (194), Expect = 4e-39 Identities = 427/641 (67%), Gaps = 13/641 (2%) Strand=Plus/Minus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 || || |||||| | || ||||||| | || || || ||||| || |||||| || Sbjct 7438 GAACCACTGCTGAGAGAAAACCCCCAGCACTTTGTCATCTTCCCTATTGAATACCATGAT 7379 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || ||| | ||||| || || || ||| | || || ||||| | ||||||||||| || Sbjct 7378 ATTTGGTGAATGTATAAGAAAGCTGAGCCTTCCTTTTGGACGGCGGAGGAGGTGGATCTT 7319 Query 116696 TCCAAGGACACG-AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCA 116754 |||||||||| ||| ||||||| | ||| | || | |||||||| | | Sbjct 7318 TCCAAGGACATTTAGC-ACTGGGAAGCCCAGAAGCCTGAGAAGAGACATTTCAT--ATCT 7262 Query 116755 CGTG--CTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 |||| ||||| || || || || || ||| ||| || || || || |||| | || | Sbjct 7261 CGTGTTCTGGCTTTCTTTGCAGCAAGTGACAGCACAGTAAATGACAACTTGGTGGCGCAT 7202 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 || | || || || ||| | || | || ||||| ||||| || || |||| Sbjct 7201 TTTGGCCAAGAAGTTCAGAAG-CCTAC------TGTTTCTATGGCTTCCAAATTGCCACA 7149 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAG 116932 | ||| |||| || | |||||| | || ||||| ||| | ||| | Sbjct 7148 AAAAACATGCATTCTAAGATGTATAGTCTTTTTATTGACACTTACATTAAAGATTCTAAA 7089 Query 116933 GAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAG 116992 || | | | | || || ||||| || |||||||| || ||| | |||||| || Sbjct 7088 GAAAGGGAATTTCTCTTCAATGCCATTGAAACGATGCCTTGTGTCTAGATGAAGGCGGAT 7029 Query 116993 TGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTC 117052 ||| | || | ||||| | | || |||||| ||| ||| || | | || ||||| Sbjct 7028 TGGACCTTGTGTTGGATTGGGGACAAAGAGGCTACCTACGGAGAACATGTTGTAGCCTTT 6969 Query 117053 GCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAA 117112 || || || || ||| |||||||||| || ||| || | ||||| ||||| |||||| Sbjct 6968 GCCGCAGTGGAAGGCATCTTCTTTTCTGGTTTTTTTGCATCGATATTCTGGCTAAAGAAA 6909 Query 117113 CGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTG 117172 | || || ||||| ||||| || || | | || || | ||| || |||||| | Sbjct 6908 TGAGGACTGATGCCTGGCCTCACATTTTCCTATGAACTTACTAGCAGAGATGAGGGTTTA 6849 Query 117173 CATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCA 117213 | ||| ||||||||||| || ||||||| || |||| || Sbjct 6848 CGTTGTGACTTTGCCTGCCTGATGTTCAAACACCTGGTACA 6808 >seq1627958 Length=3316 Score = 122 bits (134), Expect = 9e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| |||||||| | || ||||| ||| Sbjct 94 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGGCCATCACCCTTGAAGTCGAGCCCAGT 153 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||||| ||| || | ||||| || ||||||||| | || ||| Sbjct 154 GACACCATTGAGAATGTCAAGGCAAAGATCCAAGACAAGGAAGGCATCCCCCCTGATCAG 213 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | |||| || || ||||||||||| || | |||||| | ||||||||| Sbjct 214 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGATGGACGCACCGTGTCTGACTACAAC 273 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| |||| ||| |||| ||||| | || ||| |||| ||||| || Sbjct 274 ATCTAGAAAGAGTCCACCCTGCACTTGGTCTTGTGCTTCAGGGGAGG 320 >seq2677557 Length=202 Score = 105 bits (116), Expect = 7e-18 Identities = 139/189 (74%), Gaps = 3/189 (2%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| |||| || || ||| Sbjct 188 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTGGAGCCCAGT 129 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||| | ||||| | ||||| |||||||||||| | ||||| Sbjct 128 GACACCATCGAGAACG-TCAAAGCCAAAATCCAAGACAAGGAGGGCATCCCC-CCGACCA 71 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || || | || ||||||| |||||| || | | ||| || ||||||||| Sbjct 70 GCAGTGTCTGATATTTGCAGGCAAACGGCTGGAGGATGGCCACACTCTTTCCGACTACAA 11 Query 40869 CATCCAGAA 40877 ||| | ||| Sbjct 10 CATTCGGAA 2 >seq1292660 Length=282 Score = 102 bits (112), Expect = 8e-17 Identities = 137/188 (73%), Gaps = 2/188 (1%) Strand=Plus/Minus Query 40717 GGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCG-TGCAAACGCTCAAGGAAAA 40775 ||||| ||||||||| |||| ||| | ||| |||| | || || | |||||| || Sbjct 281 GGCAAGACCATCACCCTCGAGGTCAAGCCCAGTGACACCACTGAGAATG-TCAAGGCCAA 223 Query 40776 AATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACA 40835 ||||| | ||| ||||||||||| ||||| || | || || | || |||||||| Sbjct 222 AATTCAAGCCAAGGAGGGCATCCCACTTGACCAACAGTGTCTGATATTTGCAGGCAAACA 163 Query 40836 GCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCT 40895 |||||| || | ||||| ||| |||| |||||||||||| ||| ||| ||||| || Sbjct 162 GCTGGAGGATGGCCGCACTCTCTCAGACTGCAACATCCAGAAAGAGTCCATCCTGCACCT 103 Query 40896 AGTGTTGC 40903 | | ||| Sbjct 102 GGGGCTGC 95 >seq1549142 Length=19220 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| | || ||||| || Sbjct 14561 ATGCAGATCTTTGTGAAGACCCTAACAGGCAAGACCATCACCCTTGAGGTCGAGCTCAGT 14502 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||| || ||||| | |||| ||||||||||| | |||| | Sbjct 14501 GATATCATTGAGAATGTCAAAGACAAAATCCAAAACAAGGAGGGCATCCCACCTGACCTG 14442 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | || || | ||||||||||||||||| || | | ||| || |||||| || Sbjct 14441 CAGTGTCTGATATTTGCGGGCAAACAGCTGGAAGATGGCCACACTCTTTTAGACTACGAC 14382 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 | |||||| ||| ||| ||||| || ||| | || || |||| || Sbjct 14381 ACCCAGAAAGAGTCCAGCCTGCACCTGGTGCTTTGCCTGCAGGGCAGC 14334 >seq1537392 Length=19804 Score = 100 bits (110), Expect = 3e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || || || ||||| ||||||||| |||| || || ||| Sbjct 11860 ATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTCGAGGTAGAGCCCAAT 11919 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | ||| |||||| || | ||||| || ||||||| | || ||| Sbjct 11920 GACACCATTGAGAATGTCATGGAAAAGATCCAAGACAAGGAAGGCATCCTTCCTGATCAG 11979 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || | | |||| || || |||||| || | || | | |||||| ||||||||| Sbjct 11980 CAGAGTTTGATCTTTGCTGGGAAACAGGTGAAAGATGGACACACCCTGTCTGACTACAAC 12039 Query 40870 ATCCAGAAGGAGGCCACGCTGCA 40892 |||||||| ||| |||| ||||| Sbjct 12040 ATCCAGAAAGAGTCCACCCTGCA 12062 >seq2031399 Length=344 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||||||||| || || || || || ||||| |||| |||||| || Sbjct 19 AAGATGCAGATTTTCGTAAAAACCCTTACAGGGAAGACTATCACTCTCGAGGTCGAACCC 78 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | ||| | |||| || || | || || || || || || | || Sbjct 79 TCGGATACAATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 138 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 |||||| |||| || | || ||||| || ||||| || | || || | |||||| Sbjct 139 CAGCAAAGACTGATTTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 198 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 ||||| || |||||| |||| || ||||| |||||| Sbjct 199 AACATTCAAAAGGAGTCCACTCTTCATCTTGTGTTG 234 >seq1581579 Length=3724 Score = 96.9 bits (106), Expect = 3e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 40696 ATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGC 40755 || ||| | || || | || ||||| | ||||||| || | || || ||| |||| | Sbjct 2806 ATCTTCCTGAAGACCTTGACTGGCAAGATCATCACCCTCAAGGTTGAGTCCAGTGACACC 2865 Query 40756 G-TGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACG 40814 || ||| | |||||| ||| || | ||||| || | |||||| | || ||||| | Sbjct 2866 ACTGGAAATG-TCAAGGCAAAGATCCAAGACAAGGAAGACATCCCTTCCGATCAGCAGGG 2924 Query 40815 ACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCA 40874 | |||| || | || ||||||| | | ||||||||| |||||||||||||| Sbjct 2925 GTTGATCTTTGCCAGGAAGTAGCTGGAACATGGGCGCACCCTGTCTGACTACAACATCCA 2984 Query 40875 GAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| ||| ||| ||||| || || || |||||||||| || Sbjct 2985 GAAAGAGTTCACCCTGCACCTGGTCCTGAGCTTGAGGGGAGG 3026 >seq2955825 Length=1785 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/191 (72%), Gaps = 3/191 (2%) Strand=Plus/Plus Query 40729 ACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAA 40787 ||| | || ||| | ||| |||||| || | |||| |||| | ||||| | | ||| Sbjct 1 ACCCTTGAGGTCAAGCCCAGTGACAGCATGGAGAACG-TCAAAGCCAAAATCCAAGGCAA 59 Query 40788 AGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGA 40847 ||||||||||| | ||||||| || || || | || |||||||||||||| || | Sbjct 60 GGAGGGCATCCCACCTCACCAGCAGCGTCTAATATTTGCAGGCAAACAGCTGGAGGATGG 119 Query 40848 GCGCAC-CCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCT 40906 |||| | || ||||||||||||||||| ||| |||| |||| || ||| | | | Sbjct 120 CTGCACTCGTCTCAGACTACAACATCCAGAAAGAGTCCACCCTGCTGCTGGTGCTTCACC 179 Query 40907 TGAGGGGCGGC 40917 || | |||||| Sbjct 180 TGCGAGGCGGC 190 >seq2929101 Length=1797 Score = 95.1 bits (104), Expect = 1e-14 Identities = 144/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 40695 AATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAG 40754 |||||| || || || || |||||||| ||||| ||| | || ||| | ||| |||| Sbjct 1148 AATATTGGTGAAGACCCTGACGGGCAAGACCATAACCCTTGAGGTCAAGTCCAGTGACAC 1089 Query 40755 CGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACG 40814 | | | | |||| | |||| | ||||| ||||| ||||| | |||||||| | Sbjct 1088 CATCGAGAATGTCAAAGTCAAAACCCAAGACAAGGAGGGAATCCCACCTGACCAGCAGCA 1029 Query 40815 ACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCA 40874 || || | ||| ||||||||||| || | ||||| || || ||||||||||| Sbjct 1028 TCTGATATTTTCGGATAAACAGCTGGAGGATGGCCGCACTCTTTCAGATTACAACATCCA 969 Query 40875 GAAGGAGGCCACGCTGCATCTAGTG 40899 | | ||| |||| ||||| || ||| Sbjct 968 GGAAGAGTCCACTCTGCACCTGGTG 944 >seq1715087 Length=7196 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 || ||||| || |||||| | |||||||| | ||||||| || ||||| |||||||| Sbjct 7146 GATAAAGAAGGGATCCCCCCCGACCAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAA 7087 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 || | ||||| || ||||||||||||||||| ||| | || ||||| || || | Sbjct 7086 GATGGTCGCACTCTTTCTGACTACAACATCCAGAAAGAGTCAACCCTGCACCTGGTTCTC 7027 Query 40903 CGCTTGAGGGGCGGC 40917 || ||||||| ||| Sbjct 7026 CGTCTGAGGGGTGGC 7012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494408820286800